Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00920 and MMJJ_RS00925 are separated by 79 nucleotides MMJJ_RS00925 and MMJJ_RS00930 are separated by 86 nucleotides MMJJ_RS00930 and MMJJ_RS00935 are separated by 46 nucleotides
MMJJ_RS00920: MMJJ_RS00920 - hypothetical protein, at 177,621 to 179,768
_RS00920
MMJJ_RS00925: MMJJ_RS00925 - hypothetical protein, at 179,848 to 180,360
_RS00925
MMJJ_RS00930: MMJJ_RS00930 - queuosine precursor transporter, at 180,447 to 181,055
_RS00930
MMJJ_RS00935: MMJJ_RS00935 - nickel pincer cofactor biosynthesis protein LarB, at 181,102 to 181,887
_RS00935
Position (kb) 179
180
181 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 179.074 kb on - strand, within MMJJ_RS00920 at 179.174 kb on - strand, within MMJJ_RS00920 at 179.175 kb on + strand, within MMJJ_RS00920 at 179.175 kb on + strand, within MMJJ_RS00920 at 179.175 kb on + strand, within MMJJ_RS00920 at 179.215 kb on + strand, within MMJJ_RS00920 at 179.222 kb on + strand, within MMJJ_RS00920 at 179.255 kb on - strand, within MMJJ_RS00920 at 179.256 kb on + strand, within MMJJ_RS00920 at 179.269 kb on - strand, within MMJJ_RS00920 at 179.270 kb on + strand, within MMJJ_RS00920 at 179.272 kb on + strand, within MMJJ_RS00920 at 179.294 kb on - strand, within MMJJ_RS00920 at 179.294 kb on - strand, within MMJJ_RS00920 at 179.294 kb on - strand, within MMJJ_RS00920 at 179.295 kb on + strand, within MMJJ_RS00920 at 179.295 kb on + strand, within MMJJ_RS00920 at 179.297 kb on - strand, within MMJJ_RS00920 at 179.298 kb on + strand, within MMJJ_RS00920 at 179.347 kb on - strand at 179.347 kb on - strand, within MMJJ_RS00920 at 179.348 kb on + strand, within MMJJ_RS00920 at 179.361 kb on + strand, within MMJJ_RS00920 at 179.388 kb on + strand, within MMJJ_RS00920 at 179.392 kb on - strand, within MMJJ_RS00920 at 179.393 kb on + strand, within MMJJ_RS00920 at 179.393 kb on + strand, within MMJJ_RS00920 at 179.402 kb on - strand, within MMJJ_RS00920 at 179.419 kb on + strand, within MMJJ_RS00920 at 179.477 kb on - strand, within MMJJ_RS00920 at 179.478 kb on + strand, within MMJJ_RS00920 at 179.483 kb on + strand, within MMJJ_RS00920 at 179.483 kb on + strand, within MMJJ_RS00920 at 179.489 kb on + strand, within MMJJ_RS00920 at 179.523 kb on - strand, within MMJJ_RS00920 at 179.542 kb on - strand, within MMJJ_RS00920 at 179.542 kb on - strand, within MMJJ_RS00920 at 179.542 kb on - strand, within MMJJ_RS00920 at 179.542 kb on - strand, within MMJJ_RS00920 at 179.559 kb on + strand at 179.573 kb on - strand at 179.605 kb on - strand at 179.619 kb on + strand at 179.625 kb on + strand at 179.625 kb on + strand at 179.638 kb on - strand at 179.638 kb on - strand at 179.639 kb on + strand at 179.643 kb on - strand at 179.643 kb on - strand at 179.644 kb on + strand at 179.644 kb on + strand at 179.644 kb on + strand at 179.644 kb on + strand at 179.693 kb on - strand at 179.702 kb on + strand at 179.767 kb on + strand at 179.767 kb on + strand at 179.805 kb on + strand at 179.807 kb on + strand at 179.807 kb on + strand at 179.807 kb on + strand at 179.810 kb on - strand at 179.810 kb on - strand at 179.811 kb on + strand at 179.811 kb on + strand at 179.817 kb on + strand at 179.817 kb on + strand at 179.817 kb on + strand at 179.825 kb on - strand at 179.825 kb on - strand at 179.827 kb on - strand at 179.827 kb on - strand at 179.828 kb on + strand at 179.828 kb on + strand at 179.828 kb on + strand at 179.828 kb on + strand at 179.844 kb on - strand at 179.844 kb on - strand at 179.844 kb on - strand at 179.844 kb on - strand at 179.845 kb on + strand at 179.845 kb on + strand at 179.846 kb on - strand at 179.846 kb on - strand at 179.847 kb on + strand at 179.847 kb on + strand at 179.847 kb on + strand at 179.991 kb on - strand, within MMJJ_RS00925 at 180.059 kb on - strand, within MMJJ_RS00925 at 180.060 kb on + strand, within MMJJ_RS00925 at 180.063 kb on - strand, within MMJJ_RS00925 at 180.063 kb on - strand, within MMJJ_RS00925 at 180.110 kb on + strand, within MMJJ_RS00925 at 180.151 kb on + strand, within MMJJ_RS00925 at 180.177 kb on - strand, within MMJJ_RS00925 at 180.178 kb on + strand, within MMJJ_RS00925 at 180.247 kb on + strand, within MMJJ_RS00925 at 180.273 kb on - strand, within MMJJ_RS00925 at 180.358 kb on - strand at 180.385 kb on - strand at 180.388 kb on - strand at 180.389 kb on + strand at 180.411 kb on - strand at 180.412 kb on + strand at 180.423 kb on - strand at 180.424 kb on + strand at 180.432 kb on - strand at 180.432 kb on - strand at 180.432 kb on - strand at 180.433 kb on + strand at 180.433 kb on + strand at 180.436 kb on - strand at 180.436 kb on - strand at 180.436 kb on - strand at 180.437 kb on + strand at 180.437 kb on + strand at 180.437 kb on + strand at 180.489 kb on - strand at 180.517 kb on - strand, within MMJJ_RS00930 at 180.518 kb on + strand, within MMJJ_RS00930 at 180.585 kb on - strand, within MMJJ_RS00930 at 180.599 kb on - strand, within MMJJ_RS00930 at 180.601 kb on - strand, within MMJJ_RS00930 at 180.604 kb on - strand, within MMJJ_RS00930 at 180.604 kb on - strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.605 kb on + strand, within MMJJ_RS00930 at 180.840 kb on - strand, within MMJJ_RS00930 at 180.859 kb on - strand, within MMJJ_RS00930 at 180.867 kb on + strand, within MMJJ_RS00930 at 180.882 kb on + strand, within MMJJ_RS00930 at 180.890 kb on + strand, within MMJJ_RS00930 at 180.914 kb on + strand, within MMJJ_RS00930 at 180.995 kb on - strand at 181.001 kb on + strand at 181.022 kb on - strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.024 kb on - strand at 181.025 kb on + strand at 181.026 kb on - strand at 181.027 kb on + strand at 181.091 kb on + strand at 181.091 kb on + strand at 181.091 kb on + strand at 181.116 kb on - strand at 181.116 kb on - strand at 181.117 kb on + strand at 181.193 kb on + strand, within MMJJ_RS00935 at 181.202 kb on + strand, within MMJJ_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 179,074 - MMJJ_RS00920 0.68 -1.5 179,174 - MMJJ_RS00920 0.72 -0.3 179,175 + MMJJ_RS00920 0.72 -2.8 179,175 + MMJJ_RS00920 0.72 +1.3 179,175 + MMJJ_RS00920 0.72 -2.7 179,215 + MMJJ_RS00920 0.74 -1.3 179,222 + MMJJ_RS00920 0.75 -0.8 179,255 - MMJJ_RS00920 0.76 -2.3 179,256 + MMJJ_RS00920 0.76 +1.0 179,269 - MMJJ_RS00920 0.77 +2.0 179,270 + MMJJ_RS00920 0.77 +0.3 179,272 + MMJJ_RS00920 0.77 -2.6 179,294 - MMJJ_RS00920 0.78 -4.0 179,294 - MMJJ_RS00920 0.78 -0.6 179,294 - MMJJ_RS00920 0.78 -2.0 179,295 + MMJJ_RS00920 0.78 +0.3 179,295 + MMJJ_RS00920 0.78 -2.4 179,297 - MMJJ_RS00920 0.78 -2.1 179,298 + MMJJ_RS00920 0.78 +4.6 179,347 - +0.0 179,347 - MMJJ_RS00920 0.80 +0.5 179,348 + MMJJ_RS00920 0.80 +1.3 179,361 + MMJJ_RS00920 0.81 -1.7 179,388 + MMJJ_RS00920 0.82 -0.8 179,392 - MMJJ_RS00920 0.82 -1.8 179,393 + MMJJ_RS00920 0.82 -2.3 179,393 + MMJJ_RS00920 0.82 +1.6 179,402 - MMJJ_RS00920 0.83 +1.0 179,419 + MMJJ_RS00920 0.84 +1.4 179,477 - MMJJ_RS00920 0.86 +0.8 179,478 + MMJJ_RS00920 0.86 +2.5 179,483 + MMJJ_RS00920 0.87 -0.6 179,483 + MMJJ_RS00920 0.87 -0.2 179,489 + MMJJ_RS00920 0.87 -2.0 179,523 - MMJJ_RS00920 0.89 +2.2 179,542 - MMJJ_RS00920 0.89 +1.9 179,542 - MMJJ_RS00920 0.89 -0.4 179,542 - MMJJ_RS00920 0.89 -1.4 179,542 - MMJJ_RS00920 0.89 +1.9 179,559 + -0.4 179,573 - -0.8 179,605 - +1.0 179,619 + -3.0 179,625 + +2.5 179,625 + +0.8 179,638 - +0.5 179,638 - -0.7 179,639 + -1.6 179,643 - -2.1 179,643 - +0.4 179,644 + +0.1 179,644 + -2.7 179,644 + -3.6 179,644 + +1.0 179,693 - -1.6 179,702 + -0.2 179,767 + +2.9 179,767 + -1.6 179,805 + -1.8 179,807 + +2.1 179,807 + -1.1 179,807 + -2.1 179,810 - -0.6 179,810 - +2.3 179,811 + +1.4 179,811 + -0.2 179,817 + +1.6 179,817 + +0.7 179,817 + +2.8 179,825 - +2.9 179,825 - +0.2 179,827 - -2.1 179,827 - -3.5 179,828 + +2.6 179,828 + +1.6 179,828 + -0.3 179,828 + -1.3 179,844 - -1.6 179,844 - -0.5 179,844 - +2.5 179,844 - +3.6 179,845 + -1.2 179,845 + -1.0 179,846 - +1.9 179,846 - -0.5 179,847 + -0.1 179,847 + +0.4 179,847 + -0.7 179,991 - MMJJ_RS00925 0.28 -2.8 180,059 - MMJJ_RS00925 0.41 -1.4 180,060 + MMJJ_RS00925 0.41 -0.5 180,063 - MMJJ_RS00925 0.42 +0.0 180,063 - MMJJ_RS00925 0.42 -2.3 180,110 + MMJJ_RS00925 0.51 +1.3 180,151 + MMJJ_RS00925 0.59 -0.7 180,177 - MMJJ_RS00925 0.64 +0.3 180,178 + MMJJ_RS00925 0.64 -1.3 180,247 + MMJJ_RS00925 0.78 -1.6 180,273 - MMJJ_RS00925 0.83 -2.9 180,358 - +1.4 180,385 - -0.1 180,388 - +1.1 180,389 + -1.3 180,411 - -1.8 180,412 + +2.0 180,423 - -0.8 180,424 + -1.4 180,432 - -1.1 180,432 - +0.8 180,432 - -4.1 180,433 + +2.2 180,433 + -1.8 180,436 - -0.6 180,436 - +3.0 180,436 - +0.9 180,437 + +1.2 180,437 + +0.9 180,437 + +3.5 180,489 - +1.8 180,517 - MMJJ_RS00930 0.11 +5.9 180,518 + MMJJ_RS00930 0.12 +2.4 180,585 - MMJJ_RS00930 0.23 +1.1 180,599 - MMJJ_RS00930 0.25 +0.1 180,601 - MMJJ_RS00930 0.25 +1.9 180,604 - MMJJ_RS00930 0.26 +1.5 180,604 - MMJJ_RS00930 0.26 -2.6 180,605 + MMJJ_RS00930 0.26 +0.3 180,605 + MMJJ_RS00930 0.26 -2.4 180,605 + MMJJ_RS00930 0.26 +1.9 180,840 - MMJJ_RS00930 0.65 -0.7 180,859 - MMJJ_RS00930 0.68 +4.5 180,867 + MMJJ_RS00930 0.69 +0.3 180,882 + MMJJ_RS00930 0.71 -1.7 180,890 + MMJJ_RS00930 0.73 -1.3 180,914 + MMJJ_RS00930 0.77 -0.9 180,995 - -1.8 181,001 + -0.4 181,022 - -0.9 181,023 + -1.6 181,024 - -4.0 181,024 - -0.1 181,025 + -0.6 181,026 - -0.3 181,027 + +0.5 181,091 + -1.2 181,091 + +1.6 181,091 + +1.9 181,116 - +2.8 181,116 - -2.6 181,117 + +0.9 181,193 + MMJJ_RS00935 0.12 -0.6 181,202 + MMJJ_RS00935 0.13 -3.8
Or see this region's nucleotide sequence