Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00895 and MMJJ_RS00900 are separated by 152 nucleotides MMJJ_RS00900 and MMJJ_RS00905 are separated by 283 nucleotides
MMJJ_RS00895: MMJJ_RS00895 - coenzyme F420 hydrogenase subunit beta, at 171,320 to 172,168
_RS00895
MMJJ_RS00900: MMJJ_RS00900 - PC4/YdbC family ssDNA-binding protein, at 172,321 to 172,542
_RS00900
MMJJ_RS00905: MMJJ_RS00905 - right-handed parallel beta-helix repeat-containing protein, at 172,826 to 174,760
_RS00905
Position (kb) 172
173 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 171.338 kb on - strand at 171.340 kb on - strand at 171.340 kb on - strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.354 kb on + strand at 171.371 kb on + strand at 171.378 kb on - strand at 171.419 kb on - strand, within MMJJ_RS00895 at 171.419 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.426 kb on + strand, within MMJJ_RS00895 at 171.447 kb on - strand, within MMJJ_RS00895 at 171.485 kb on + strand, within MMJJ_RS00895 at 171.541 kb on - strand, within MMJJ_RS00895 at 171.542 kb on + strand, within MMJJ_RS00895 at 171.545 kb on - strand, within MMJJ_RS00895 at 171.547 kb on - strand, within MMJJ_RS00895 at 171.548 kb on + strand, within MMJJ_RS00895 at 171.564 kb on - strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.574 kb on + strand, within MMJJ_RS00895 at 171.586 kb on + strand, within MMJJ_RS00895 at 171.646 kb on - strand, within MMJJ_RS00895 at 171.647 kb on + strand, within MMJJ_RS00895 at 171.654 kb on - strand, within MMJJ_RS00895 at 171.677 kb on + strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.683 kb on + strand, within MMJJ_RS00895 at 171.714 kb on - strand, within MMJJ_RS00895 at 171.760 kb on + strand, within MMJJ_RS00895 at 171.849 kb on - strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.934 kb on - strand, within MMJJ_RS00895 at 171.935 kb on + strand, within MMJJ_RS00895 at 171.985 kb on - strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.062 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.163 kb on - strand at 172.178 kb on - strand at 172.199 kb on - strand at 172.199 kb on - strand at 172.205 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.212 kb on - strand at 172.264 kb on - strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.293 kb on - strand at 172.294 kb on + strand at 172.298 kb on + strand at 172.298 kb on + strand at 172.343 kb on - strand at 172.343 kb on - strand at 172.362 kb on + strand, within MMJJ_RS00900 at 172.366 kb on - strand, within MMJJ_RS00900 at 172.398 kb on + strand, within MMJJ_RS00900 at 172.432 kb on - strand, within MMJJ_RS00900 at 172.437 kb on - strand, within MMJJ_RS00900 at 172.438 kb on + strand, within MMJJ_RS00900 at 172.439 kb on - strand, within MMJJ_RS00900 at 172.439 kb on - strand, within MMJJ_RS00900 at 172.487 kb on - strand, within MMJJ_RS00900 at 172.540 kb on - strand at 172.541 kb on + strand at 172.562 kb on + strand at 172.570 kb on - strand at 172.605 kb on - strand at 172.611 kb on - strand at 172.615 kb on + strand at 172.615 kb on + strand at 172.648 kb on - strand at 172.649 kb on + strand at 172.654 kb on + strand at 172.716 kb on - strand at 172.717 kb on + strand at 172.740 kb on - strand at 172.753 kb on - strand at 172.754 kb on + strand at 172.759 kb on - strand at 172.760 kb on + strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.761 kb on - strand at 172.777 kb on - strand at 172.801 kb on - strand at 172.801 kb on - strand at 172.803 kb on - strand at 172.804 kb on + strand at 172.804 kb on + strand at 172.804 kb on - strand at 172.836 kb on - strand at 172.837 kb on + strand at 172.837 kb on + strand at 172.839 kb on - strand at 172.839 kb on - strand at 172.840 kb on + strand at 172.840 kb on + strand at 172.840 kb on + strand at 172.849 kb on - strand at 172.849 kb on - strand at 172.849 kb on - strand at 172.885 kb on + strand at 172.890 kb on + strand at 172.909 kb on - strand at 172.913 kb on - strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.914 kb on + strand at 172.932 kb on - strand at 172.933 kb on + strand at 172.950 kb on + strand at 172.953 kb on + strand at 172.956 kb on - strand at 172.989 kb on - strand at 173.008 kb on + strand at 173.013 kb on - strand at 173.098 kb on - strand, within MMJJ_RS00905 at 173.129 kb on - strand, within MMJJ_RS00905 at 173.134 kb on - strand, within MMJJ_RS00905 at 173.173 kb on + strand, within MMJJ_RS00905 at 173.173 kb on + strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.183 kb on - strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.184 kb on + strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.187 kb on - strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.188 kb on + strand, within MMJJ_RS00905 at 173.226 kb on - strand, within MMJJ_RS00905 at 173.226 kb on - strand, within MMJJ_RS00905 at 173.227 kb on + strand, within MMJJ_RS00905 at 173.227 kb on + strand, within MMJJ_RS00905 at 173.230 kb on - strand, within MMJJ_RS00905 at 173.277 kb on - strand, within MMJJ_RS00905 at 173.277 kb on - strand, within MMJJ_RS00905 at 173.278 kb on + strand, within MMJJ_RS00905 at 173.281 kb on - strand, within MMJJ_RS00905 at 173.282 kb on + strand, within MMJJ_RS00905 at 173.285 kb on - strand, within MMJJ_RS00905 at 173.292 kb on - strand, within MMJJ_RS00905 at 173.292 kb on - strand, within MMJJ_RS00905 at 173.303 kb on + strand, within MMJJ_RS00905 at 173.330 kb on - strand, within MMJJ_RS00905 at 173.384 kb on + strand, within MMJJ_RS00905 at 173.419 kb on + strand, within MMJJ_RS00905 at 173.447 kb on - strand, within MMJJ_RS00905 at 173.491 kb on - strand, within MMJJ_RS00905 at 173.504 kb on - strand, within MMJJ_RS00905 at 173.523 kb on + strand, within MMJJ_RS00905 at 173.527 kb on + strand, within MMJJ_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 171,338 - +0.3 171,340 - -1.3 171,340 - +0.4 171,341 + -2.1 171,341 + -2.8 171,341 + +1.0 171,341 + +1.8 171,349 - -1.8 171,349 - -2.4 171,349 - -2.4 171,350 + -1.5 171,350 + +1.8 171,350 + +1.8 171,352 + +1.4 171,352 + -2.1 171,352 + -0.7 171,352 + -1.1 171,352 + +0.6 171,354 + -0.2 171,371 + -0.8 171,378 - +0.7 171,419 - MMJJ_RS00895 0.12 +2.1 171,419 - MMJJ_RS00895 0.12 +0.0 171,425 - MMJJ_RS00895 0.12 -0.0 171,425 - +1.0 171,425 - MMJJ_RS00895 0.12 -1.2 171,425 - MMJJ_RS00895 0.12 -3.0 171,425 - MMJJ_RS00895 0.12 -2.1 171,425 - MMJJ_RS00895 0.12 +0.1 171,426 + MMJJ_RS00895 0.12 +3.6 171,447 - MMJJ_RS00895 0.15 +0.4 171,485 + MMJJ_RS00895 0.19 +3.1 171,541 - MMJJ_RS00895 0.26 -1.1 171,542 + MMJJ_RS00895 0.26 -2.4 171,545 - MMJJ_RS00895 0.27 -2.3 171,547 - MMJJ_RS00895 0.27 +3.4 171,548 + MMJJ_RS00895 0.27 +0.8 171,564 - MMJJ_RS00895 0.29 -3.0 171,565 + MMJJ_RS00895 0.29 +0.3 171,565 + MMJJ_RS00895 0.29 +2.0 171,565 + MMJJ_RS00895 0.29 +0.2 171,574 + MMJJ_RS00895 0.30 +1.6 171,586 + MMJJ_RS00895 0.31 -1.8 171,646 - MMJJ_RS00895 0.38 +1.0 171,647 + MMJJ_RS00895 0.39 -1.9 171,654 - MMJJ_RS00895 0.39 -0.7 171,677 + MMJJ_RS00895 0.42 +0.4 171,682 - MMJJ_RS00895 0.43 +1.0 171,682 - MMJJ_RS00895 0.43 -0.4 171,683 + MMJJ_RS00895 0.43 -2.7 171,714 - MMJJ_RS00895 0.46 -1.0 171,760 + MMJJ_RS00895 0.52 -2.2 171,849 - MMJJ_RS00895 0.62 +1.6 171,850 + MMJJ_RS00895 0.62 -0.3 171,850 + MMJJ_RS00895 0.62 -1.5 171,881 - MMJJ_RS00895 0.66 -0.6 171,881 - MMJJ_RS00895 0.66 +3.8 171,882 + MMJJ_RS00895 0.66 +0.8 171,882 + MMJJ_RS00895 0.66 +1.4 171,882 + MMJJ_RS00895 0.66 -0.6 171,882 + MMJJ_RS00895 0.66 +2.2 171,903 - MMJJ_RS00895 0.69 -3.8 171,903 - MMJJ_RS00895 0.69 +0.9 171,903 - MMJJ_RS00895 0.69 -1.6 171,903 - MMJJ_RS00895 0.69 +0.7 171,903 - MMJJ_RS00895 0.69 -0.8 171,903 - MMJJ_RS00895 0.69 -2.1 171,903 - MMJJ_RS00895 0.69 -2.8 171,903 - MMJJ_RS00895 0.69 -1.0 171,903 - MMJJ_RS00895 0.69 -0.6 171,904 + MMJJ_RS00895 0.69 -1.0 171,904 + MMJJ_RS00895 0.69 +0.2 171,904 + MMJJ_RS00895 0.69 -0.8 171,904 + MMJJ_RS00895 0.69 +1.0 171,904 + MMJJ_RS00895 0.69 -0.9 171,904 + MMJJ_RS00895 0.69 -1.4 171,904 + MMJJ_RS00895 0.69 +0.4 171,907 - MMJJ_RS00895 0.69 -2.9 171,907 - MMJJ_RS00895 0.69 -0.2 171,908 + MMJJ_RS00895 0.69 +2.3 171,908 + MMJJ_RS00895 0.69 +4.3 171,914 - MMJJ_RS00895 0.70 -0.3 171,914 - MMJJ_RS00895 0.70 -0.2 171,915 + MMJJ_RS00895 0.70 +1.4 171,915 + MMJJ_RS00895 0.70 +2.3 171,934 - MMJJ_RS00895 0.72 -1.1 171,935 + MMJJ_RS00895 0.72 -1.3 171,985 - MMJJ_RS00895 0.78 +0.2 171,986 + MMJJ_RS00895 0.78 -0.1 171,986 + MMJJ_RS00895 0.78 +2.2 172,008 + MMJJ_RS00895 0.81 +0.4 172,008 + MMJJ_RS00895 0.81 +1.8 172,062 - MMJJ_RS00895 0.87 -0.6 172,080 - MMJJ_RS00895 0.90 +0.0 172,080 - MMJJ_RS00895 0.90 +2.4 172,080 - MMJJ_RS00895 0.90 +1.4 172,080 - MMJJ_RS00895 0.90 +1.9 172,080 - MMJJ_RS00895 0.90 -0.6 172,163 - -0.9 172,178 - -3.6 172,199 - +2.0 172,199 - -0.8 172,205 - -1.0 172,209 - +1.2 172,209 - +1.3 172,209 - -0.6 172,209 - -1.6 172,210 + -0.0 172,210 + -0.9 172,212 - +2.5 172,264 - +1.5 172,282 - +3.8 172,282 - +1.4 172,293 - -2.3 172,294 + +0.1 172,298 + +0.7 172,298 + -0.6 172,343 - +2.2 172,343 - -1.5 172,362 + MMJJ_RS00900 0.18 +0.0 172,366 - MMJJ_RS00900 0.20 +1.8 172,398 + MMJJ_RS00900 0.35 -0.8 172,432 - MMJJ_RS00900 0.50 +2.1 172,437 - MMJJ_RS00900 0.52 +1.7 172,438 + MMJJ_RS00900 0.53 +1.2 172,439 - MMJJ_RS00900 0.53 +0.7 172,439 - MMJJ_RS00900 0.53 +2.7 172,487 - MMJJ_RS00900 0.75 +1.1 172,540 - +0.0 172,541 + -3.0 172,562 + -1.7 172,570 - +1.9 172,605 - -0.8 172,611 - -0.7 172,615 + -1.1 172,615 + -1.4 172,648 - -1.7 172,649 + -3.0 172,654 + +1.0 172,716 - +2.4 172,717 + +2.3 172,740 - -1.0 172,753 - +1.3 172,754 + -0.5 172,759 - -1.0 172,760 + -1.1 172,761 - -4.0 172,761 - -2.9 172,761 - +0.0 172,761 - -1.8 172,777 - -1.0 172,801 - -1.8 172,801 - +0.0 172,803 - -1.6 172,804 + -4.0 172,804 + -2.1 172,804 - -1.1 172,836 - +2.3 172,837 + -0.9 172,837 + +3.6 172,839 - -1.1 172,839 - -1.3 172,840 + +1.5 172,840 + -2.4 172,840 + +1.4 172,849 - -0.7 172,849 - +1.3 172,849 - -1.6 172,885 + +2.9 172,890 + -1.9 172,909 - -2.5 172,913 - -0.2 172,914 + +1.0 172,914 + -0.2 172,914 + -2.1 172,914 + +0.6 172,932 - -2.1 172,933 + +0.1 172,950 + +0.3 172,953 + -3.1 172,956 - -1.5 172,989 - -2.0 173,008 + +1.0 173,013 - -2.0 173,098 - MMJJ_RS00905 0.14 -1.4 173,129 - MMJJ_RS00905 0.16 +1.4 173,134 - MMJJ_RS00905 0.16 -0.5 173,173 + MMJJ_RS00905 0.18 -2.3 173,173 + MMJJ_RS00905 0.18 +3.5 173,183 - MMJJ_RS00905 0.18 -2.6 173,183 - MMJJ_RS00905 0.18 -0.6 173,183 - MMJJ_RS00905 0.18 +1.0 173,183 - MMJJ_RS00905 0.18 +1.2 173,183 - MMJJ_RS00905 0.18 -1.5 173,183 - MMJJ_RS00905 0.18 -1.1 173,183 - MMJJ_RS00905 0.18 -1.3 173,183 - MMJJ_RS00905 0.18 -1.8 173,184 + MMJJ_RS00905 0.19 +0.0 173,184 + MMJJ_RS00905 0.19 +1.3 173,184 + MMJJ_RS00905 0.19 -2.5 173,187 - MMJJ_RS00905 0.19 -1.7 173,187 - MMJJ_RS00905 0.19 +0.5 173,187 - MMJJ_RS00905 0.19 +0.4 173,187 - MMJJ_RS00905 0.19 +0.1 173,187 - MMJJ_RS00905 0.19 -1.9 173,188 + MMJJ_RS00905 0.19 -3.0 173,188 + MMJJ_RS00905 0.19 +3.2 173,188 + MMJJ_RS00905 0.19 -2.3 173,188 + MMJJ_RS00905 0.19 +2.4 173,188 + MMJJ_RS00905 0.19 +1.3 173,188 + MMJJ_RS00905 0.19 +0.5 173,188 + MMJJ_RS00905 0.19 -1.5 173,188 + MMJJ_RS00905 0.19 -1.3 173,188 + MMJJ_RS00905 0.19 -4.1 173,226 - MMJJ_RS00905 0.21 +0.0 173,226 - MMJJ_RS00905 0.21 -2.4 173,227 + MMJJ_RS00905 0.21 +3.0 173,227 + MMJJ_RS00905 0.21 +2.3 173,230 - MMJJ_RS00905 0.21 +0.6 173,277 - MMJJ_RS00905 0.23 +2.5 173,277 - MMJJ_RS00905 0.23 +3.6 173,278 + MMJJ_RS00905 0.23 -0.8 173,281 - MMJJ_RS00905 0.24 +0.7 173,282 + MMJJ_RS00905 0.24 +2.4 173,285 - MMJJ_RS00905 0.24 +1.5 173,292 - MMJJ_RS00905 0.24 +1.2 173,292 - MMJJ_RS00905 0.24 +2.1 173,303 + MMJJ_RS00905 0.25 +0.4 173,330 - MMJJ_RS00905 0.26 -0.4 173,384 + MMJJ_RS00905 0.29 -1.0 173,419 + MMJJ_RS00905 0.31 -1.4 173,447 - MMJJ_RS00905 0.32 +0.4 173,491 - MMJJ_RS00905 0.34 +1.7 173,504 - MMJJ_RS00905 0.35 -2.0 173,523 + MMJJ_RS00905 0.36 -1.0 173,527 + MMJJ_RS00905 0.36 -0.5
Or see this region's nucleotide sequence