Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00880 and MMJJ_RS00885 are separated by 13 nucleotides MMJJ_RS00885 and MMJJ_RS00890 are separated by 10 nucleotides MMJJ_RS00890 and MMJJ_RS00895 are separated by 21 nucleotides
MMJJ_RS00880: MMJJ_RS00880 - coenzyme F420 hydrogenase subunit alpha, at 168,813 to 170,045
_RS00880
MMJJ_RS00885: MMJJ_RS00885 - coenzyme F420-reducing hydrogenase, FrhD protein, at 170,059 to 170,559
_RS00885
MMJJ_RS00890: MMJJ_RS00890 - coenzyme F420 hydrogenase subunit gamma, at 170,570 to 171,298
_RS00890
MMJJ_RS00895: MMJJ_RS00895 - coenzyme F420 hydrogenase subunit beta, at 171,320 to 172,168
_RS00895
Position (kb) 170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 169.581 kb on - strand, within MMJJ_RS00880 at 169.581 kb on - strand, within MMJJ_RS00880 at 169.610 kb on - strand, within MMJJ_RS00880 at 169.611 kb on + strand, within MMJJ_RS00880 at 169.611 kb on + strand, within MMJJ_RS00880 at 169.640 kb on - strand, within MMJJ_RS00880 at 169.664 kb on + strand, within MMJJ_RS00880 at 169.664 kb on + strand, within MMJJ_RS00880 at 169.691 kb on + strand, within MMJJ_RS00880 at 169.691 kb on + strand, within MMJJ_RS00880 at 169.694 kb on + strand, within MMJJ_RS00880 at 169.729 kb on - strand, within MMJJ_RS00880 at 169.859 kb on - strand, within MMJJ_RS00880 at 169.868 kb on - strand, within MMJJ_RS00880 at 169.868 kb on - strand, within MMJJ_RS00880 at 169.916 kb on - strand, within MMJJ_RS00880 at 169.917 kb on + strand, within MMJJ_RS00880 at 169.917 kb on + strand, within MMJJ_RS00880 at 169.955 kb on + strand at 169.955 kb on + strand at 169.955 kb on + strand at 169.963 kb on + strand at 169.994 kb on + strand at 170.007 kb on - strand at 170.039 kb on + strand at 170.044 kb on + strand at 170.072 kb on - strand at 170.142 kb on + strand, within MMJJ_RS00885 at 170.148 kb on - strand, within MMJJ_RS00885 at 170.148 kb on - strand, within MMJJ_RS00885 at 170.149 kb on + strand, within MMJJ_RS00885 at 170.180 kb on - strand, within MMJJ_RS00885 at 170.180 kb on - strand at 170.181 kb on + strand, within MMJJ_RS00885 at 170.236 kb on + strand, within MMJJ_RS00885 at 170.237 kb on - strand, within MMJJ_RS00885 at 170.403 kb on + strand, within MMJJ_RS00885 at 170.418 kb on - strand, within MMJJ_RS00885 at 170.422 kb on - strand, within MMJJ_RS00885 at 170.566 kb on - strand at 170.587 kb on - strand at 170.590 kb on + strand at 170.654 kb on + strand, within MMJJ_RS00890 at 170.673 kb on - strand, within MMJJ_RS00890 at 170.768 kb on + strand, within MMJJ_RS00890 at 170.796 kb on - strand, within MMJJ_RS00890 at 170.826 kb on - strand, within MMJJ_RS00890 at 170.827 kb on + strand, within MMJJ_RS00890 at 170.857 kb on + strand, within MMJJ_RS00890 at 170.890 kb on - strand, within MMJJ_RS00890 at 170.893 kb on - strand, within MMJJ_RS00890 at 170.893 kb on - strand, within MMJJ_RS00890 at 170.958 kb on - strand, within MMJJ_RS00890 at 170.958 kb on - strand, within MMJJ_RS00890 at 170.959 kb on + strand, within MMJJ_RS00890 at 170.959 kb on + strand, within MMJJ_RS00890 at 170.968 kb on + strand, within MMJJ_RS00890 at 171.012 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.023 kb on + strand at 171.023 kb on + strand, within MMJJ_RS00890 at 171.054 kb on - strand, within MMJJ_RS00890 at 171.108 kb on - strand, within MMJJ_RS00890 at 171.122 kb on + strand, within MMJJ_RS00890 at 171.124 kb on + strand, within MMJJ_RS00890 at 171.210 kb on - strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.280 kb on + strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.320 kb on + strand at 171.338 kb on - strand at 171.340 kb on - strand at 171.340 kb on - strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.354 kb on + strand at 171.371 kb on + strand at 171.378 kb on - strand at 171.419 kb on - strand, within MMJJ_RS00895 at 171.419 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.426 kb on + strand, within MMJJ_RS00895 at 171.447 kb on - strand, within MMJJ_RS00895 at 171.485 kb on + strand, within MMJJ_RS00895 at 171.541 kb on - strand, within MMJJ_RS00895 at 171.542 kb on + strand, within MMJJ_RS00895 at 171.545 kb on - strand, within MMJJ_RS00895 at 171.547 kb on - strand, within MMJJ_RS00895 at 171.548 kb on + strand, within MMJJ_RS00895 at 171.564 kb on - strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.574 kb on + strand, within MMJJ_RS00895 at 171.586 kb on + strand, within MMJJ_RS00895 at 171.646 kb on - strand, within MMJJ_RS00895 at 171.647 kb on + strand, within MMJJ_RS00895 at 171.654 kb on - strand, within MMJJ_RS00895 at 171.677 kb on + strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.683 kb on + strand, within MMJJ_RS00895 at 171.714 kb on - strand, within MMJJ_RS00895 at 171.760 kb on + strand, within MMJJ_RS00895 at 171.849 kb on - strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.934 kb on - strand, within MMJJ_RS00895 at 171.935 kb on + strand, within MMJJ_RS00895 at 171.985 kb on - strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.062 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.163 kb on - strand at 172.178 kb on - strand at 172.199 kb on - strand at 172.199 kb on - strand at 172.205 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.212 kb on - strand at 172.264 kb on - strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.293 kb on - strand at 172.294 kb on + strand at 172.298 kb on + strand at 172.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 169,581 - MMJJ_RS00880 0.62 +1.3 169,581 - MMJJ_RS00880 0.62 +3.1 169,610 - MMJJ_RS00880 0.65 -0.3 169,611 + MMJJ_RS00880 0.65 +1.6 169,611 + MMJJ_RS00880 0.65 +0.5 169,640 - MMJJ_RS00880 0.67 +0.9 169,664 + MMJJ_RS00880 0.69 -2.1 169,664 + MMJJ_RS00880 0.69 +0.5 169,691 + MMJJ_RS00880 0.71 -1.0 169,691 + MMJJ_RS00880 0.71 +1.0 169,694 + MMJJ_RS00880 0.71 +0.9 169,729 - MMJJ_RS00880 0.74 +1.8 169,859 - MMJJ_RS00880 0.85 -0.5 169,868 - MMJJ_RS00880 0.86 -1.2 169,868 - MMJJ_RS00880 0.86 -0.5 169,916 - MMJJ_RS00880 0.89 -2.1 169,917 + MMJJ_RS00880 0.90 +0.6 169,917 + MMJJ_RS00880 0.90 -1.3 169,955 + +2.1 169,955 + -1.2 169,955 + -2.0 169,963 + -0.3 169,994 + -1.8 170,007 - -1.0 170,039 + -1.0 170,044 + -0.5 170,072 - -1.6 170,142 + MMJJ_RS00885 0.17 +0.3 170,148 - MMJJ_RS00885 0.18 +1.7 170,148 - MMJJ_RS00885 0.18 -1.1 170,149 + MMJJ_RS00885 0.18 -0.9 170,180 - MMJJ_RS00885 0.24 -2.3 170,180 - +1.0 170,181 + MMJJ_RS00885 0.24 -1.5 170,236 + MMJJ_RS00885 0.35 -2.3 170,237 - MMJJ_RS00885 0.36 +1.7 170,403 + MMJJ_RS00885 0.69 -1.3 170,418 - MMJJ_RS00885 0.72 +2.8 170,422 - MMJJ_RS00885 0.72 +4.9 170,566 - -3.3 170,587 - -0.1 170,590 + -1.3 170,654 + MMJJ_RS00890 0.12 +0.0 170,673 - MMJJ_RS00890 0.14 -1.8 170,768 + MMJJ_RS00890 0.27 +2.2 170,796 - MMJJ_RS00890 0.31 +0.1 170,826 - MMJJ_RS00890 0.35 -2.0 170,827 + MMJJ_RS00890 0.35 +0.1 170,857 + MMJJ_RS00890 0.39 -1.8 170,890 - MMJJ_RS00890 0.44 -0.6 170,893 - MMJJ_RS00890 0.44 +2.3 170,893 - MMJJ_RS00890 0.44 +1.5 170,958 - MMJJ_RS00890 0.53 -2.6 170,958 - MMJJ_RS00890 0.53 -3.1 170,959 + MMJJ_RS00890 0.53 +0.9 170,959 + MMJJ_RS00890 0.53 +2.1 170,968 + MMJJ_RS00890 0.55 +4.3 171,012 - MMJJ_RS00890 0.61 -0.4 171,022 - MMJJ_RS00890 0.62 -1.0 171,022 - MMJJ_RS00890 0.62 -2.5 171,022 - MMJJ_RS00890 0.62 -2.6 171,023 + +0.0 171,023 + MMJJ_RS00890 0.62 +3.2 171,054 - MMJJ_RS00890 0.66 -1.7 171,108 - MMJJ_RS00890 0.74 +2.9 171,122 + MMJJ_RS00890 0.76 +2.5 171,124 + MMJJ_RS00890 0.76 +2.3 171,210 - MMJJ_RS00890 0.88 -2.4 171,211 + MMJJ_RS00890 0.88 +1.5 171,211 + MMJJ_RS00890 0.88 +2.0 171,211 + MMJJ_RS00890 0.88 -2.3 171,211 + MMJJ_RS00890 0.88 -0.3 171,280 + -0.3 171,300 - +1.4 171,300 - +0.6 171,300 - +1.8 171,320 + +2.6 171,338 - +0.3 171,340 - -1.3 171,340 - +0.4 171,341 + -2.1 171,341 + -2.8 171,341 + +1.0 171,341 + +1.8 171,349 - -1.8 171,349 - -2.4 171,349 - -2.4 171,350 + -1.5 171,350 + +1.8 171,350 + +1.8 171,352 + +1.4 171,352 + -2.1 171,352 + -0.7 171,352 + -1.1 171,352 + +0.6 171,354 + -0.2 171,371 + -0.8 171,378 - +0.7 171,419 - MMJJ_RS00895 0.12 +2.1 171,419 - MMJJ_RS00895 0.12 +0.0 171,425 - MMJJ_RS00895 0.12 -0.0 171,425 - +1.0 171,425 - MMJJ_RS00895 0.12 -1.2 171,425 - MMJJ_RS00895 0.12 -3.0 171,425 - MMJJ_RS00895 0.12 -2.1 171,425 - MMJJ_RS00895 0.12 +0.1 171,426 + MMJJ_RS00895 0.12 +3.6 171,447 - MMJJ_RS00895 0.15 +0.4 171,485 + MMJJ_RS00895 0.19 +3.1 171,541 - MMJJ_RS00895 0.26 -1.1 171,542 + MMJJ_RS00895 0.26 -2.4 171,545 - MMJJ_RS00895 0.27 -2.3 171,547 - MMJJ_RS00895 0.27 +3.4 171,548 + MMJJ_RS00895 0.27 +0.8 171,564 - MMJJ_RS00895 0.29 -3.0 171,565 + MMJJ_RS00895 0.29 +0.3 171,565 + MMJJ_RS00895 0.29 +2.0 171,565 + MMJJ_RS00895 0.29 +0.2 171,574 + MMJJ_RS00895 0.30 +1.6 171,586 + MMJJ_RS00895 0.31 -1.8 171,646 - MMJJ_RS00895 0.38 +1.0 171,647 + MMJJ_RS00895 0.39 -1.9 171,654 - MMJJ_RS00895 0.39 -0.7 171,677 + MMJJ_RS00895 0.42 +0.4 171,682 - MMJJ_RS00895 0.43 +1.0 171,682 - MMJJ_RS00895 0.43 -0.4 171,683 + MMJJ_RS00895 0.43 -2.7 171,714 - MMJJ_RS00895 0.46 -1.0 171,760 + MMJJ_RS00895 0.52 -2.2 171,849 - MMJJ_RS00895 0.62 +1.6 171,850 + MMJJ_RS00895 0.62 -0.3 171,850 + MMJJ_RS00895 0.62 -1.5 171,881 - MMJJ_RS00895 0.66 -0.6 171,881 - MMJJ_RS00895 0.66 +3.8 171,882 + MMJJ_RS00895 0.66 +0.8 171,882 + MMJJ_RS00895 0.66 +1.4 171,882 + MMJJ_RS00895 0.66 -0.6 171,882 + MMJJ_RS00895 0.66 +2.2 171,903 - MMJJ_RS00895 0.69 -3.8 171,903 - MMJJ_RS00895 0.69 +0.9 171,903 - MMJJ_RS00895 0.69 -1.6 171,903 - MMJJ_RS00895 0.69 +0.7 171,903 - MMJJ_RS00895 0.69 -0.8 171,903 - MMJJ_RS00895 0.69 -2.1 171,903 - MMJJ_RS00895 0.69 -2.8 171,903 - MMJJ_RS00895 0.69 -1.0 171,903 - MMJJ_RS00895 0.69 -0.6 171,904 + MMJJ_RS00895 0.69 -1.0 171,904 + MMJJ_RS00895 0.69 +0.2 171,904 + MMJJ_RS00895 0.69 -0.8 171,904 + MMJJ_RS00895 0.69 +1.0 171,904 + MMJJ_RS00895 0.69 -0.9 171,904 + MMJJ_RS00895 0.69 -1.4 171,904 + MMJJ_RS00895 0.69 +0.4 171,907 - MMJJ_RS00895 0.69 -2.9 171,907 - MMJJ_RS00895 0.69 -0.2 171,908 + MMJJ_RS00895 0.69 +2.3 171,908 + MMJJ_RS00895 0.69 +4.3 171,914 - MMJJ_RS00895 0.70 -0.3 171,914 - MMJJ_RS00895 0.70 -0.2 171,915 + MMJJ_RS00895 0.70 +1.4 171,915 + MMJJ_RS00895 0.70 +2.3 171,934 - MMJJ_RS00895 0.72 -1.1 171,935 + MMJJ_RS00895 0.72 -1.3 171,985 - MMJJ_RS00895 0.78 +0.2 171,986 + MMJJ_RS00895 0.78 -0.1 171,986 + MMJJ_RS00895 0.78 +2.2 172,008 + MMJJ_RS00895 0.81 +0.4 172,008 + MMJJ_RS00895 0.81 +1.8 172,062 - MMJJ_RS00895 0.87 -0.6 172,080 - MMJJ_RS00895 0.90 +0.0 172,080 - MMJJ_RS00895 0.90 +2.4 172,080 - MMJJ_RS00895 0.90 +1.4 172,080 - MMJJ_RS00895 0.90 +1.9 172,080 - MMJJ_RS00895 0.90 -0.6 172,163 - -0.9 172,178 - -3.6 172,199 - +2.0 172,199 - -0.8 172,205 - -1.0 172,209 - +1.2 172,209 - +1.3 172,209 - -0.6 172,209 - -1.6 172,210 + -0.0 172,210 + -0.9 172,212 - +2.5 172,264 - +1.5 172,282 - +3.8 172,282 - +1.4 172,293 - -2.3 172,294 + +0.1 172,298 + +0.7 172,298 + -0.6
Or see this region's nucleotide sequence