Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00820 and MMJJ_RS00825 are separated by 121 nucleotides MMJJ_RS00825 and MMJJ_RS00830 are separated by 24 nucleotides MMJJ_RS00830 and MMJJ_RS00835 are separated by 267 nucleotides
MMJJ_RS00820: MMJJ_RS00820 - MtaA/CmuA family methyltransferase, at 156,404 to 157,432
_RS00820
MMJJ_RS00825: MMJJ_RS00825 - uroporphyrinogen decarboxylase family protein, at 157,554 to 158,645
_RS00825
MMJJ_RS00830: MMJJ_RS00830 - corrinoid protein, at 158,670 to 159,329
_RS00830
MMJJ_RS00835: MMJJ_RS00835 - hypothetical protein, at 159,597 to 159,941
_RS00835
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 156.617 kb on - strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.618 kb on + strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.634 kb on - strand, within MMJJ_RS00820 at 156.650 kb on - strand, within MMJJ_RS00820 at 156.651 kb on + strand, within MMJJ_RS00820 at 156.665 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.674 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.766 kb on - strand, within MMJJ_RS00820 at 156.768 kb on - strand, within MMJJ_RS00820 at 156.769 kb on + strand, within MMJJ_RS00820 at 156.861 kb on + strand, within MMJJ_RS00820 at 156.937 kb on - strand, within MMJJ_RS00820 at 156.938 kb on + strand, within MMJJ_RS00820 at 156.947 kb on + strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.948 kb on - strand, within MMJJ_RS00820 at 156.949 kb on + strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.951 kb on - strand, within MMJJ_RS00820 at 156.952 kb on + strand, within MMJJ_RS00820 at 156.982 kb on - strand, within MMJJ_RS00820 at 156.986 kb on + strand, within MMJJ_RS00820 at 157.047 kb on + strand, within MMJJ_RS00820 at 157.139 kb on + strand, within MMJJ_RS00820 at 157.153 kb on - strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.154 kb on + strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.156 kb on - strand, within MMJJ_RS00820 at 157.199 kb on - strand, within MMJJ_RS00820 at 157.200 kb on + strand, within MMJJ_RS00820 at 157.224 kb on - strand, within MMJJ_RS00820 at 157.225 kb on + strand, within MMJJ_RS00820 at 157.261 kb on - strand, within MMJJ_RS00820 at 157.307 kb on - strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.308 kb on + strand, within MMJJ_RS00820 at 157.336 kb on - strand at 157.336 kb on - strand at 157.364 kb on - strand at 157.365 kb on + strand at 157.365 kb on + strand at 157.464 kb on + strand at 157.481 kb on - strand at 157.520 kb on + strand at 157.555 kb on - strand at 157.556 kb on + strand at 157.565 kb on + strand at 157.581 kb on - strand at 157.585 kb on - strand at 157.586 kb on + strand at 157.659 kb on + strand at 157.662 kb on - strand at 157.663 kb on + strand at 157.663 kb on + strand at 157.663 kb on + strand at 157.668 kb on - strand, within MMJJ_RS00825 at 157.669 kb on + strand, within MMJJ_RS00825 at 157.669 kb on + strand, within MMJJ_RS00825 at 157.737 kb on + strand, within MMJJ_RS00825 at 157.779 kb on + strand, within MMJJ_RS00825 at 157.808 kb on - strand, within MMJJ_RS00825 at 157.879 kb on + strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.932 kb on - strand, within MMJJ_RS00825 at 157.934 kb on - strand, within MMJJ_RS00825 at 157.959 kb on - strand, within MMJJ_RS00825 at 157.980 kb on - strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 157.981 kb on + strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.019 kb on - strand, within MMJJ_RS00825 at 158.020 kb on + strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.027 kb on - strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.028 kb on + strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.051 kb on - strand, within MMJJ_RS00825 at 158.052 kb on + strand, within MMJJ_RS00825 at 158.054 kb on - strand, within MMJJ_RS00825 at 158.106 kb on - strand, within MMJJ_RS00825 at 158.126 kb on - strand, within MMJJ_RS00825 at 158.223 kb on + strand, within MMJJ_RS00825 at 158.289 kb on + strand, within MMJJ_RS00825 at 158.316 kb on - strand, within MMJJ_RS00825 at 158.322 kb on + strand, within MMJJ_RS00825 at 158.344 kb on + strand, within MMJJ_RS00825 at 158.372 kb on - strand, within MMJJ_RS00825 at 158.465 kb on + strand, within MMJJ_RS00825 at 158.646 kb on + strand at 158.680 kb on + strand at 158.732 kb on - strand at 158.735 kb on + strand at 158.735 kb on + strand at 158.827 kb on + strand, within MMJJ_RS00830 at 158.945 kb on - strand, within MMJJ_RS00830 at 158.956 kb on - strand, within MMJJ_RS00830 at 158.995 kb on + strand, within MMJJ_RS00830 at 159.048 kb on + strand, within MMJJ_RS00830 at 159.076 kb on + strand, within MMJJ_RS00830 at 159.076 kb on + strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.106 kb on - strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.107 kb on + strand, within MMJJ_RS00830 at 159.127 kb on + strand, within MMJJ_RS00830 at 159.130 kb on + strand, within MMJJ_RS00830 at 159.130 kb on + strand, within MMJJ_RS00830 at 159.238 kb on - strand, within MMJJ_RS00830 at 159.250 kb on + strand, within MMJJ_RS00830 at 159.276 kb on + strand at 159.303 kb on - strand at 159.304 kb on + strand at 159.304 kb on + strand at 159.304 kb on + strand at 159.354 kb on + strand at 159.475 kb on - strand at 159.490 kb on - strand at 159.538 kb on - strand at 159.538 kb on - strand at 159.538 kb on - strand at 159.539 kb on + strand at 159.539 kb on + strand at 159.539 kb on + strand at 159.541 kb on - strand at 159.541 kb on - strand at 159.542 kb on + strand at 159.542 kb on + strand at 159.542 kb on + strand at 159.544 kb on - strand at 159.544 kb on - strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.545 kb on + strand at 159.546 kb on - strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.547 kb on + strand at 159.549 kb on - strand at 159.549 kb on - strand at 159.550 kb on + strand at 159.550 kb on + strand at 159.550 kb on + strand at 159.551 kb on - strand at 159.551 kb on - strand at 159.551 kb on - strand at 159.559 kb on - strand at 159.559 kb on - strand at 159.560 kb on + strand at 159.560 kb on + strand at 159.560 kb on + strand at 159.561 kb on - strand at 159.576 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.581 kb on - strand at 159.582 kb on + strand at 159.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 156,617 - MMJJ_RS00820 0.21 +1.9 156,618 + MMJJ_RS00820 0.21 -1.2 156,618 + MMJJ_RS00820 0.21 -2.9 156,634 - MMJJ_RS00820 0.22 +1.0 156,634 - MMJJ_RS00820 0.22 +0.4 156,650 - MMJJ_RS00820 0.24 +0.9 156,651 + MMJJ_RS00820 0.24 -0.3 156,665 - MMJJ_RS00820 0.25 -3.2 156,674 - MMJJ_RS00820 0.26 -0.8 156,674 - MMJJ_RS00820 0.26 -3.3 156,766 - MMJJ_RS00820 0.35 +0.7 156,766 - MMJJ_RS00820 0.35 +0.3 156,766 - MMJJ_RS00820 0.35 +1.0 156,768 - MMJJ_RS00820 0.35 -1.7 156,769 + MMJJ_RS00820 0.35 -0.1 156,861 + MMJJ_RS00820 0.44 +1.5 156,937 - MMJJ_RS00820 0.52 -1.8 156,938 + MMJJ_RS00820 0.52 -1.1 156,947 + MMJJ_RS00820 0.53 +0.6 156,948 - MMJJ_RS00820 0.53 +0.7 156,948 - MMJJ_RS00820 0.53 +1.9 156,949 + MMJJ_RS00820 0.53 +1.4 156,951 - MMJJ_RS00820 0.53 -1.8 156,951 - MMJJ_RS00820 0.53 -0.1 156,952 + MMJJ_RS00820 0.53 +1.6 156,982 - MMJJ_RS00820 0.56 -1.1 156,986 + MMJJ_RS00820 0.57 +0.8 157,047 + MMJJ_RS00820 0.62 -1.0 157,139 + MMJJ_RS00820 0.71 -3.2 157,153 - MMJJ_RS00820 0.73 +1.2 157,154 + MMJJ_RS00820 0.73 +1.5 157,154 + MMJJ_RS00820 0.73 -0.6 157,156 - MMJJ_RS00820 0.73 +0.4 157,156 - MMJJ_RS00820 0.73 +1.8 157,199 - MMJJ_RS00820 0.77 -1.2 157,200 + MMJJ_RS00820 0.77 +1.7 157,224 - MMJJ_RS00820 0.80 -2.1 157,225 + MMJJ_RS00820 0.80 -1.6 157,261 - MMJJ_RS00820 0.83 -0.6 157,307 - MMJJ_RS00820 0.88 +1.1 157,308 + MMJJ_RS00820 0.88 -2.1 157,308 + MMJJ_RS00820 0.88 -1.4 157,336 - -2.1 157,336 - -2.4 157,364 - +1.1 157,365 + -2.1 157,365 + -2.7 157,464 + +1.6 157,481 - -0.6 157,520 + -1.4 157,555 - +3.4 157,556 + -0.5 157,565 + -1.0 157,581 - +0.7 157,585 - +2.3 157,586 + +0.0 157,659 + -1.9 157,662 - -0.6 157,663 + -1.4 157,663 + +1.7 157,663 + -0.1 157,668 - MMJJ_RS00825 0.10 +3.8 157,669 + MMJJ_RS00825 0.11 +0.2 157,669 + MMJJ_RS00825 0.11 +0.9 157,737 + MMJJ_RS00825 0.17 +2.4 157,779 + MMJJ_RS00825 0.21 -1.2 157,808 - MMJJ_RS00825 0.23 -2.0 157,879 + MMJJ_RS00825 0.30 +3.3 157,932 - MMJJ_RS00825 0.35 -0.4 157,932 - MMJJ_RS00825 0.35 -0.6 157,932 - MMJJ_RS00825 0.35 -1.0 157,934 - MMJJ_RS00825 0.35 -0.4 157,959 - MMJJ_RS00825 0.37 +0.0 157,980 - MMJJ_RS00825 0.39 +1.2 157,981 + MMJJ_RS00825 0.39 +1.1 157,981 + MMJJ_RS00825 0.39 -2.0 158,019 - MMJJ_RS00825 0.43 +2.5 158,019 - MMJJ_RS00825 0.43 -1.8 158,020 + MMJJ_RS00825 0.43 +0.5 158,027 - MMJJ_RS00825 0.43 -1.0 158,027 - MMJJ_RS00825 0.43 +2.3 158,027 - MMJJ_RS00825 0.43 +2.2 158,027 - MMJJ_RS00825 0.43 -0.6 158,027 - MMJJ_RS00825 0.43 -1.0 158,028 + MMJJ_RS00825 0.43 +0.3 158,028 + MMJJ_RS00825 0.43 -1.1 158,028 + MMJJ_RS00825 0.43 -2.0 158,051 - MMJJ_RS00825 0.46 +2.1 158,051 - MMJJ_RS00825 0.46 -0.4 158,052 + MMJJ_RS00825 0.46 +0.9 158,054 - MMJJ_RS00825 0.46 +2.6 158,106 - MMJJ_RS00825 0.51 -2.3 158,126 - MMJJ_RS00825 0.52 -2.3 158,223 + MMJJ_RS00825 0.61 -1.3 158,289 + MMJJ_RS00825 0.67 -2.8 158,316 - MMJJ_RS00825 0.70 +0.6 158,322 + MMJJ_RS00825 0.70 -3.3 158,344 + MMJJ_RS00825 0.72 +1.5 158,372 - MMJJ_RS00825 0.75 -0.1 158,465 + MMJJ_RS00825 0.83 -1.3 158,646 + -3.8 158,680 + +0.8 158,732 - -2.3 158,735 + +2.9 158,735 + -1.7 158,827 + MMJJ_RS00830 0.24 +0.0 158,945 - MMJJ_RS00830 0.42 +0.2 158,956 - MMJJ_RS00830 0.43 -1.0 158,995 + MMJJ_RS00830 0.49 +0.4 159,048 + MMJJ_RS00830 0.57 -3.6 159,076 + MMJJ_RS00830 0.62 +1.4 159,076 + MMJJ_RS00830 0.62 +2.5 159,106 - MMJJ_RS00830 0.66 -2.9 159,106 - MMJJ_RS00830 0.66 +0.5 159,106 - MMJJ_RS00830 0.66 +3.6 159,106 - MMJJ_RS00830 0.66 -0.7 159,107 + MMJJ_RS00830 0.66 +2.2 159,107 + MMJJ_RS00830 0.66 -0.2 159,107 + MMJJ_RS00830 0.66 -1.0 159,127 + MMJJ_RS00830 0.69 +1.1 159,130 + MMJJ_RS00830 0.70 +1.8 159,130 + MMJJ_RS00830 0.70 +1.3 159,238 - MMJJ_RS00830 0.86 -1.9 159,250 + MMJJ_RS00830 0.88 -2.2 159,276 + -0.8 159,303 - -0.3 159,304 + -2.3 159,304 + +2.9 159,304 + -1.2 159,354 + -1.1 159,475 - -0.1 159,490 - +1.0 159,538 - -1.1 159,538 - +2.0 159,538 - +0.2 159,539 + +2.0 159,539 + +1.5 159,539 + +1.6 159,541 - -0.2 159,541 - -0.3 159,542 + +0.6 159,542 + -0.0 159,542 + +2.7 159,544 - -1.3 159,544 - -0.6 159,545 + -3.4 159,545 + -0.7 159,545 + +1.0 159,545 + +2.2 159,545 + -2.9 159,545 + +1.2 159,546 - -1.4 159,547 + -0.2 159,547 + +2.0 159,547 + -1.8 159,547 + +1.3 159,549 - -0.2 159,549 - +1.0 159,550 + +2.9 159,550 + +1.0 159,550 + -0.7 159,551 - +2.1 159,551 - -3.4 159,551 - -1.0 159,559 - -0.4 159,559 - +0.2 159,560 + -0.6 159,560 + +0.5 159,560 + -2.1 159,561 - +1.0 159,576 - -1.7 159,581 - +1.9 159,581 - -1.8 159,581 - +0.0 159,581 - -2.9 159,582 + -1.0 159,586 + -2.4
Or see this region's nucleotide sequence