Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00745

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
142,836	+		MMJJ_RS00735	0.28	+1.0
142,836	+		MMJJ_RS00735	0.28	-1.9
142,839	+		MMJJ_RS00735	0.28	+1.4
142,841	-		MMJJ_RS00735	0.29	-2.1
142,841	-		MMJJ_RS00735	0.29	+2.2
142,842	+		MMJJ_RS00735	0.29	+0.0
142,847	-		MMJJ_RS00735	0.30	+1.1
142,889	-		MMJJ_RS00735	0.37	-1.9
142,926	-				+1.1
142,964	-		MMJJ_RS00735	0.49	-1.7
142,964	-		MMJJ_RS00735	0.49	+0.5
142,964	-		MMJJ_RS00735	0.49	-0.4
142,964	-		MMJJ_RS00735	0.49	+0.1
142,964	-		MMJJ_RS00735	0.49	+1.7
142,964	-		MMJJ_RS00735	0.49	+1.4
142,965	+		MMJJ_RS00735	0.49	-2.0
142,965	+		MMJJ_RS00735	0.49	-0.7
142,965	+		MMJJ_RS00735	0.49	-3.1
142,965	+		MMJJ_RS00735	0.49	+1.9
142,965	+		MMJJ_RS00735	0.49	-2.7
142,965	+		MMJJ_RS00735	0.49	-2.3
142,965	+		MMJJ_RS00735	0.49	-0.2
142,965	+		MMJJ_RS00735	0.49	+0.9
142,990	-		MMJJ_RS00735	0.54	+1.0
143,007	-		MMJJ_RS00735	0.56	-1.7
143,007	-		MMJJ_RS00735	0.56	+1.1
143,035	+		MMJJ_RS00735	0.61	-1.3
143,086	+		MMJJ_RS00735	0.69	-0.1
143,086	+		MMJJ_RS00735	0.69	-1.0
143,089	+		MMJJ_RS00735	0.70	-1.0
143,090	-		MMJJ_RS00735	0.70	+1.0
143,091	+		MMJJ_RS00735	0.70	-1.6
143,138	+		MMJJ_RS00735	0.78	+0.8
143,166	+		MMJJ_RS00735	0.83	-2.4
143,222	+				+3.5
143,222	+				+0.2
143,288	+				+1.8
143,314	+				-1.3
143,314	+				-2.3
143,345	+		MMJJ_RS00740	0.10	+2.4
143,406	-		MMJJ_RS00740	0.33	-2.0
143,406	-		MMJJ_RS00740	0.33	-0.5
143,410	-		MMJJ_RS00740	0.34	+1.1
143,413	-		MMJJ_RS00740	0.36	+2.1
143,414	+		MMJJ_RS00740	0.36	+1.4
143,416	-		MMJJ_RS00740	0.37	-3.3
143,416	-		MMJJ_RS00740	0.37	-2.6
143,416	-		MMJJ_RS00740	0.37	-1.4
143,416	-		MMJJ_RS00740	0.37	+0.5
143,416	-		MMJJ_RS00740	0.37	+2.4
143,417	+		MMJJ_RS00740	0.37	+1.4
143,417	+		MMJJ_RS00740	0.37	+1.0
143,432	-		MMJJ_RS00740	0.43	-1.3
143,432	-		MMJJ_RS00740	0.43	+0.7
143,433	+		MMJJ_RS00740	0.43	+1.1
143,443	-		MMJJ_RS00740	0.47	-3.2
143,465	-		MMJJ_RS00740	0.55	-1.7
143,466	+		MMJJ_RS00740	0.55	+0.3
143,507	-		MMJJ_RS00740	0.70	+2.1
143,508	+		MMJJ_RS00740	0.71	+0.6
143,517	-		MMJJ_RS00740	0.74	-1.6
143,518	+		MMJJ_RS00740	0.74	+1.2
143,527	-		MMJJ_RS00740	0.78	-2.4
143,527	-		MMJJ_RS00740	0.78	-1.9
143,556	+		MMJJ_RS00740	0.89	+1.1
143,630	-				+1.0
143,630	-				+2.2
143,631	+				-1.6
143,631	+				-2.9
143,632	-				+0.6
143,632	-				-2.1
143,633	+				-0.9
143,637	+				-0.8
143,694	-				+3.2
143,776	-				+1.1
143,776	-				-2.8
143,781	-				-0.8
143,781	-				-2.5
143,782	+				-0.0
143,782	+				-1.5
143,843	-				-0.6
143,851	+				-0.3
143,852	-				-2.5
143,853	+				-0.1
143,869	-		MMJJ_RS00745	0.13	-2.5
143,878	+		MMJJ_RS00745	0.15	-0.4
143,885	-		MMJJ_RS00745	0.17	-3.6
143,922	-		MMJJ_RS00745	0.27	+0.6
143,928	+		MMJJ_RS00745	0.29	+0.5
143,952	+		MMJJ_RS00745	0.36	-2.2
144,196	+				+1.2
144,197	-				-1.1
144,197	-				+0.7
144,198	+				+0.9
144,198	+				-0.9
144,201	-				-2.0
144,202	+				+0.5
144,205	+				-3.9
144,205	+				-2.0
144,208	+				+2.7
144,208	+				+2.3
144,217	+				+1.9
144,261	-				-0.8
144,262	+				+1.7
144,263	-				+0.5
144,273	+				-0.9
144,310	-		MMJJ_RS00750	0.13	+1.8
144,310	-		MMJJ_RS00750	0.13	-1.1
144,311	+		MMJJ_RS00750	0.13	+0.6
144,312	-		MMJJ_RS00750	0.13	+0.2
144,313	+		MMJJ_RS00750	0.13	-2.7
144,347	+		MMJJ_RS00750	0.18	-0.3
144,383	-		MMJJ_RS00750	0.23	+1.5
144,384	+		MMJJ_RS00750	0.23	-0.5
144,387	+				+1.1
144,405	+		MMJJ_RS00750	0.26	+1.1
144,405	+		MMJJ_RS00750	0.26	-2.4
144,405	+		MMJJ_RS00750	0.26	+1.2
144,407	-		MMJJ_RS00750	0.26	-0.6
144,431	-		MMJJ_RS00750	0.29	-1.9
144,442	-		MMJJ_RS00750	0.31	+0.5
144,443	+		MMJJ_RS00750	0.31	-1.7
144,447	+		MMJJ_RS00750	0.32	+1.8
144,467	-		MMJJ_RS00750	0.34	+1.5
144,468	+		MMJJ_RS00750	0.34	+0.2
144,481	+		MMJJ_RS00750	0.36	+0.6
144,481	+		MMJJ_RS00750	0.36	-1.1
144,482	-		MMJJ_RS00750	0.36	+1.7
144,482	-		MMJJ_RS00750	0.36	+0.3
144,482	-		MMJJ_RS00750	0.36	-2.2
144,482	-		MMJJ_RS00750	0.36	+0.3
144,483	+		MMJJ_RS00750	0.36	-0.9
144,483	+		MMJJ_RS00750	0.36	+2.4
144,493	-		MMJJ_RS00750	0.38	-1.2
144,513	+		MMJJ_RS00750	0.41	-1.2
144,770	-		MMJJ_RS00750	0.76	-0.4
144,772	-		MMJJ_RS00750	0.76	+0.6
144,831	+		MMJJ_RS00750	0.84	-0.3
144,831	+		MMJJ_RS00750	0.84	-1.5
144,845	-		MMJJ_RS00750	0.86	-0.4
144,910	-				-0.7
144,911	+				-1.5
144,916	-				-3.2
144,916	-				+0.6
144,938	+				+2.1
144,938	+				+4.8
144,949	-				+1.9
144,953	-				-2.0
144,954	+				+1.6
144,995	+				+0.1
144,996	-				-0.5
144,996	-				+0.6
145,066	+		MMJJ_RS00755	0.24	+0.8
145,074	+		MMJJ_RS00755	0.28	-0.5
145,106	-		MMJJ_RS00755	0.42	-0.3
145,137	-		MMJJ_RS00755	0.55	-1.5
145,137	-		MMJJ_RS00755	0.55	-2.4
145,138	+		MMJJ_RS00755	0.56	+1.0
145,146	+		MMJJ_RS00755	0.59	-1.7
145,164	-		MMJJ_RS00755	0.67	-0.6
145,164	-		MMJJ_RS00755	0.67	-0.3
145,164	-		MMJJ_RS00755	0.67	+0.1
145,165	+		MMJJ_RS00755	0.68	+1.4