Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00705

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
136,589	-		MMJJ_RS00690	0.86	-2.3
136,590	+		MMJJ_RS00690	0.86	-2.1
136,592	-		MMJJ_RS00690	0.86	-0.7
136,593	+		MMJJ_RS00690	0.86	+2.8
136,593	+		MMJJ_RS00690	0.86	+0.1
136,593	+		MMJJ_RS00690	0.86	-0.6
136,601	-		MMJJ_RS00690	0.86	+0.1
136,601	-		MMJJ_RS00690	0.86	+1.5
136,602	+		MMJJ_RS00690	0.86	-1.5
136,610	-		MMJJ_RS00690	0.87	-1.7
136,625	+		MMJJ_RS00690	0.88	+1.4
136,625	+		MMJJ_RS00690	0.88	-2.3
136,625	+		MMJJ_RS00690	0.88	-1.9
136,634	-		MMJJ_RS00690	0.89	-3.1
136,635	+		MMJJ_RS00690	0.89	+0.4
136,635	+		MMJJ_RS00690	0.89	-0.9
136,666	-				-0.1
136,688	+				+1.5
136,688	+				-0.3
136,690	-				+2.0
136,690	-				+0.9
136,691	+				+0.5
136,691	+				+1.1
136,691	+				+2.4
136,737	-				+3.3
136,738	+				-0.9
136,738	+				-1.1
136,738	+				+0.7
136,738	+				+0.3
136,762	-				-1.9
136,772	-				-3.2
136,772	-				+1.9
136,773	+				-1.3
136,773	+				-1.3
136,773	+				+0.5
136,819	+				+1.1
136,838	-				-2.6
136,839	+				-0.8
136,878	-				-1.7
136,889	-		MMJJ_RS00695	0.12	-1.3
136,889	-		MMJJ_RS00695	0.12	-1.3
136,890	+		MMJJ_RS00695	0.12	+1.5
136,905	-		MMJJ_RS00695	0.16	+0.2
136,906	+		MMJJ_RS00695	0.17	-0.0
136,906	+		MMJJ_RS00695	0.17	-1.7
136,940	-		MMJJ_RS00695	0.26	+1.6
136,941	+		MMJJ_RS00695	0.26	-3.9
136,945	+		MMJJ_RS00695	0.27	+1.2
136,952	-		MMJJ_RS00695	0.29	-2.7
136,952	-		MMJJ_RS00695	0.29	+0.6
136,952	-		MMJJ_RS00695	0.29	+0.7
136,952	-		MMJJ_RS00695	0.29	+0.8
136,965	-		MMJJ_RS00695	0.33	+1.3
136,965	-		MMJJ_RS00695	0.33	+1.5
136,995	-		MMJJ_RS00695	0.41	-1.6
136,995	-		MMJJ_RS00695	0.41	+2.4
136,995	-		MMJJ_RS00695	0.41	+0.8
136,996	+		MMJJ_RS00695	0.41	+1.9
137,001	-		MMJJ_RS00695	0.43	+1.2
137,020	-		MMJJ_RS00695	0.48	-0.4
137,020	-		MMJJ_RS00695	0.48	-1.1
137,021	+		MMJJ_RS00695	0.48	-2.4
137,021	+		MMJJ_RS00695	0.48	+2.2
137,021	+		MMJJ_RS00695	0.48	-0.4
137,021	+		MMJJ_RS00695	0.48	+0.3
137,021	+		MMJJ_RS00695	0.48	+3.2
137,021	+				+0.1
137,021	+		MMJJ_RS00695	0.48	+0.1
137,021	+		MMJJ_RS00695	0.48	+1.3
137,021	+		MMJJ_RS00695	0.48	+3.0
137,043	-		MMJJ_RS00695	0.54	+0.1
137,199	-				-0.3
137,200	+				+0.1
137,210	-				+0.9
137,210	-				+1.3
137,212	-				-2.5
137,213	+				-2.3
137,221	-				-0.5
137,221	-				+1.7
137,222	+				+1.6
137,223	-				+0.1
137,223	-				-3.0
137,224	+				-3.2
137,224	+				+1.8
137,251	-				+0.8
137,252	+		MMJJ_RS00700	0.10	+2.1
137,252	+		MMJJ_RS00700	0.10	-1.1
137,262	-		MMJJ_RS00700	0.13	+0.7
137,263	+		MMJJ_RS00700	0.14	+0.5
137,263	+		MMJJ_RS00700	0.14	-1.2
137,263	+		MMJJ_RS00700	0.14	+1.9
137,271	-		MMJJ_RS00700	0.16	+0.4
137,271	-		MMJJ_RS00700	0.16	+0.4
137,272	+		MMJJ_RS00700	0.16	-3.2
137,272	+		MMJJ_RS00700	0.16	+3.5
137,277	-		MMJJ_RS00700	0.18	-0.9
137,305	-		MMJJ_RS00700	0.27	-0.9
137,306	+		MMJJ_RS00700	0.27	-1.5
137,306	+		MMJJ_RS00700	0.27	-0.8
137,319	+		MMJJ_RS00700	0.31	-1.2
137,322	-		MMJJ_RS00700	0.32	+2.3
137,323	+		MMJJ_RS00700	0.32	-1.3
137,331	-		MMJJ_RS00700	0.35	+2.0
137,332	+		MMJJ_RS00700	0.35	+1.2
137,460	-		MMJJ_RS00700	0.75	+2.0
137,505	+		MMJJ_RS00700	0.90	-0.3
137,517	-				+0.6
137,564	+				-2.5
137,567	-				+3.3
137,568	+				+1.3
137,582	+				+2.1
137,586	-				+0.4
137,587	+				+1.4
137,616	-				-1.3
137,646	-				+0.3
137,690	+		MMJJ_RS00705	0.13	-3.3
137,711	-		MMJJ_RS00705	0.16	+2.3
137,711	-		MMJJ_RS00705	0.16	+1.1
137,712	+		MMJJ_RS00705	0.16	+1.6
137,712	+		MMJJ_RS00705	0.16	+1.8
137,720	+		MMJJ_RS00705	0.17	+1.1
137,720	+		MMJJ_RS00705	0.17	+0.5
137,788	+		MMJJ_RS00705	0.25	-0.4
137,820	-		MMJJ_RS00705	0.29	+3.3
137,820	-		MMJJ_RS00705	0.29	+1.2
137,821	+		MMJJ_RS00705	0.29	+1.8
137,823	-		MMJJ_RS00705	0.29	+2.1
137,823	-		MMJJ_RS00705	0.29	-1.9
137,824	+		MMJJ_RS00705	0.29	+4.4
137,842	+		MMJJ_RS00705	0.32	+1.1
137,849	-		MMJJ_RS00705	0.32	+0.3
137,878	+		MMJJ_RS00705	0.36	+2.0
137,959	+		MMJJ_RS00705	0.46	+1.1
138,015	-		MMJJ_RS00705	0.53	+4.9
138,016	+		MMJJ_RS00705	0.53	-0.6
138,016	+		MMJJ_RS00705	0.53	+0.6
138,016	+		MMJJ_RS00705	0.53	+1.5
138,016	+		MMJJ_RS00705	0.53	+0.2
138,016	+		MMJJ_RS00705	0.53	+1.1
138,150	-		MMJJ_RS00705	0.69	+1.1
138,150	-		MMJJ_RS00705	0.69	+0.2
138,159	-		MMJJ_RS00705	0.70	+1.8
138,160	+		MMJJ_RS00705	0.70	-1.5
138,198	+		MMJJ_RS00705	0.75	+2.3
138,222	-		MMJJ_RS00705	0.78	-0.5
138,227	-		MMJJ_RS00705	0.78	+0.8
138,228	+		MMJJ_RS00705	0.78	+2.2
138,228	+		MMJJ_RS00705	0.78	-0.5
138,240	-		MMJJ_RS00705	0.80	+2.1
138,252	+		MMJJ_RS00705	0.81	+2.4
138,272	-		MMJJ_RS00705	0.84	-1.3
138,403	+				-1.3
138,420	-				-0.9
138,420	-				-0.5
138,420	-				+0.8
138,420	-				-0.8
138,421	+				+2.7
138,421	+				+0.1
138,421	+				-0.7
138,421	+				-1.3
138,421	+				+2.9
138,421	+				-1.1
138,422	-				+2.0
138,422	-				+1.4
138,422	-				+3.1
138,422	-				-0.3
138,422	-				-0.5
138,423	+				+0.1
138,423	+				+1.3
138,423	+				+1.5
138,423	+				-0.4
138,424	-				+1.1
138,424	-				+0.8
138,424	-				+4.4
138,424	-				+0.3
138,424	-				-4.0
138,424	-				+0.6
138,425	+				+0.3
138,425	+				+0.7
138,425	+				+3.3
138,425	+				+1.9
138,425	+				+0.6
138,425	+				+3.9
138,425	+				+1.2
138,425	+				+1.6
138,425	+				+0.5
138,466	+				-0.2
138,493	+				-0.2
138,499	-				+0.1
138,499	-				-2.9
138,499	-				-0.6
138,499	-				+0.3
138,500	+				+0.6
138,500	+				+1.6
138,500	+				+0.7
138,504	-				-2.1
138,508	-				-1.1
138,511	-				+0.8
138,514	+				-0.7
138,652	-				+0.3
138,653	+				-1.4
138,653	+				-4.1
138,657	-				-2.8
138,657	-				+2.6
138,667	-				+2.2
138,672	-				+2.3
138,672	-				-2.5
138,672	-				-2.2
138,672	-				-0.9
138,672	-				+0.5
138,673	+				-0.9
138,673	+				+0.9
138,675	-				+1.9
138,681	-				+2.8
138,684	-				-2.4
138,684	-				-2.5
138,685	+				+0.2
138,693	-				+0.3
138,695	-				+0.9
138,695	-				-0.5
138,715	-				+1.6
138,715	-				-1.6
138,715	-				+0.1
138,716	+				+1.1
138,716	+				+6.2
138,716	+				+1.0
138,719	+				+2.1
138,719	+				-0.4
138,724	+				-0.7
138,795	-				+0.7
138,795	-				-1.5
138,795	-				+0.8
138,801	-		MMJJ_RS00710	0.10	+0.9
138,814	-		MMJJ_RS00710	0.13	-3.1
138,814	-		MMJJ_RS00710	0.13	-1.6
138,814	-		MMJJ_RS00710	0.13	-0.4
138,814	-		MMJJ_RS00710	0.13	+2.2
138,814	-		MMJJ_RS00710	0.13	+1.8
138,815	+		MMJJ_RS00710	0.13	+0.4
138,815	+		MMJJ_RS00710	0.13	-0.3
138,851	-		MMJJ_RS00710	0.21	+2.4
138,867	-				-0.5
138,867	-		MMJJ_RS00710	0.24	+0.8
138,868	+		MMJJ_RS00710	0.24	-1.3
138,868	+		MMJJ_RS00710	0.24	-1.8
138,868	+		MMJJ_RS00710	0.24	+1.8
138,873	-		MMJJ_RS00710	0.25	+1.2
138,874	+		MMJJ_RS00710	0.25	+0.5
138,874	+		MMJJ_RS00710	0.25	+0.1
138,874	+		MMJJ_RS00710	0.25	-1.3
138,874	+		MMJJ_RS00710	0.25	+0.1
138,919	-		MMJJ_RS00710	0.35	+1.5
138,947	-		MMJJ_RS00710	0.41	+0.8
138,947	-		MMJJ_RS00710	0.41	+0.1
138,952	+		MMJJ_RS00710	0.42	-1.3
138,982	-		MMJJ_RS00710	0.48	+0.4
138,982	-		MMJJ_RS00710	0.48	-3.3
138,983	+		MMJJ_RS00710	0.48	+1.1
139,001	+		MMJJ_RS00710	0.52	-1.5
139,078	+		MMJJ_RS00710	0.68	-0.2
139,082	+		MMJJ_RS00710	0.69	-1.5
139,096	+		MMJJ_RS00710	0.72	+0.2
139,151	+		MMJJ_RS00710	0.83	+3.1
139,151	+		MMJJ_RS00710	0.83	-0.5
139,152	-		MMJJ_RS00710	0.83	+1.1
139,153	+		MMJJ_RS00710	0.84	+0.4
139,153	+		MMJJ_RS00710	0.84	-1.4
139,156	-		MMJJ_RS00710	0.84	+1.2
139,157	+		MMJJ_RS00710	0.84	+1.7
139,172	-		MMJJ_RS00710	0.88	+1.3
139,172	-		MMJJ_RS00710	0.88	-0.5
139,172	-		MMJJ_RS00710	0.88	-2.8
139,172	-		MMJJ_RS00710	0.88	+0.3
139,173	+		MMJJ_RS00710	0.88	-0.6
139,173	+		MMJJ_RS00710	0.88	-0.9
139,186	+				+1.0
139,201	-				+0.5
139,201	-				+1.2
139,202	+				+0.9
139,203	-				+1.1
139,203	-				+1.3
139,203	-				+0.9
139,203	-				+0.1
139,203	-				+3.0
139,204	+				+3.2
139,204	+				-1.2
139,204	+				+1.5
139,204	+				-1.4
139,262	-				-1.6
139,262	-				-1.2
139,262	-				-2.2
139,263	+				+1.2
139,263	+				+1.5
139,263	+				+1.8
139,265	-				-1.8
139,265	-				+0.3
139,371	+		MMJJ_RS00715	0.18	-3.2
139,374	-		MMJJ_RS00715	0.18	-0.3
139,375	+		MMJJ_RS00715	0.18	-2.1
139,402	-		MMJJ_RS00715	0.23	+0.4