Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00665 and MMJJ_RS00670 are separated by 576 nucleotides MMJJ_RS00670 and MMJJ_RS00675 overlap by 35 nucleotides
MMJJ_RS00665: MMJJ_RS00665 - lysine 2,3-aminomutase, at 128,959 to 130,260
_RS00665
MMJJ_RS00670: MMJJ_RS00670 - nitrogen fixation, at 130,837 to 131,157
_RS00670
MMJJ_RS00675: MMJJ_RS00675 - nitrogenase, at 131,123 to 132,499
_RS00675
Position (kb) 130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 129.846 kb on + strand, within MMJJ_RS00665 at 129.846 kb on + strand, within MMJJ_RS00665 at 129.865 kb on - strand, within MMJJ_RS00665 at 129.865 kb on - strand, within MMJJ_RS00665 at 129.866 kb on + strand, within MMJJ_RS00665 at 129.867 kb on - strand, within MMJJ_RS00665 at 129.870 kb on + strand, within MMJJ_RS00665 at 129.965 kb on + strand, within MMJJ_RS00665 at 129.996 kb on - strand, within MMJJ_RS00665 at 130.026 kb on - strand, within MMJJ_RS00665 at 130.034 kb on + strand, within MMJJ_RS00665 at 130.043 kb on - strand, within MMJJ_RS00665 at 130.043 kb on - strand, within MMJJ_RS00665 at 130.043 kb on - strand, within MMJJ_RS00665 at 130.043 kb on - strand, within MMJJ_RS00665 at 130.044 kb on + strand, within MMJJ_RS00665 at 130.044 kb on + strand, within MMJJ_RS00665 at 130.044 kb on + strand, within MMJJ_RS00665 at 130.053 kb on - strand, within MMJJ_RS00665 at 130.053 kb on - strand, within MMJJ_RS00665 at 130.069 kb on - strand, within MMJJ_RS00665 at 130.069 kb on - strand, within MMJJ_RS00665 at 130.069 kb on - strand, within MMJJ_RS00665 at 130.070 kb on + strand, within MMJJ_RS00665 at 130.070 kb on + strand, within MMJJ_RS00665 at 130.070 kb on + strand, within MMJJ_RS00665 at 130.070 kb on + strand, within MMJJ_RS00665 at 130.076 kb on + strand, within MMJJ_RS00665 at 130.140 kb on - strand at 130.140 kb on - strand at 130.140 kb on - strand at 130.141 kb on + strand at 130.141 kb on + strand at 130.153 kb on + strand at 130.178 kb on - strand at 130.179 kb on + strand at 130.226 kb on - strand at 130.227 kb on + strand at 130.232 kb on + strand at 130.232 kb on + strand at 130.234 kb on - strand at 130.236 kb on - strand at 130.237 kb on + strand at 130.249 kb on - strand at 130.271 kb on - strand at 130.271 kb on - strand at 130.272 kb on + strand at 130.272 kb on + strand at 130.317 kb on - strand at 130.317 kb on - strand at 130.317 kb on - strand at 130.317 kb on - strand at 130.317 kb on - strand at 130.318 kb on + strand at 130.319 kb on - strand at 130.319 kb on - strand at 130.319 kb on - strand at 130.320 kb on + strand at 130.320 kb on + strand at 130.320 kb on + strand at 130.343 kb on - strand at 130.344 kb on + strand at 130.394 kb on - strand at 130.394 kb on - strand at 130.394 kb on - strand at 130.394 kb on - strand at 130.395 kb on + strand at 130.440 kb on - strand at 130.440 kb on - strand at 130.440 kb on - strand at 130.440 kb on - strand at 130.441 kb on + strand at 130.441 kb on + strand at 130.441 kb on + strand at 130.444 kb on + strand at 130.445 kb on - strand at 130.445 kb on - strand at 130.445 kb on - strand at 130.445 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.451 kb on + strand at 130.451 kb on + strand at 130.451 kb on + strand at 130.488 kb on + strand at 130.488 kb on + strand at 130.489 kb on - strand at 130.489 kb on - strand at 130.489 kb on - strand at 130.489 kb on - strand at 130.490 kb on + strand at 130.498 kb on - strand at 130.521 kb on - strand at 130.521 kb on - strand at 130.522 kb on + strand at 130.522 kb on + strand at 130.522 kb on + strand at 130.525 kb on - strand at 130.525 kb on - strand at 130.530 kb on - strand at 130.531 kb on + strand at 130.534 kb on - strand at 130.553 kb on + strand at 130.563 kb on + strand at 130.572 kb on + strand at 130.572 kb on + strand at 130.597 kb on - strand at 130.640 kb on - strand at 130.640 kb on - strand at 130.640 kb on - strand at 130.641 kb on + strand at 130.656 kb on + strand at 130.701 kb on - strand at 130.729 kb on - strand at 130.735 kb on - strand at 130.891 kb on - strand, within MMJJ_RS00670 at 130.985 kb on - strand, within MMJJ_RS00670 at 130.985 kb on - strand, within MMJJ_RS00670 at 130.986 kb on + strand, within MMJJ_RS00670 at 130.986 kb on + strand, within MMJJ_RS00670 at 130.986 kb on + strand, within MMJJ_RS00670 at 131.011 kb on - strand, within MMJJ_RS00670 at 131.011 kb on - strand, within MMJJ_RS00670 at 131.011 kb on - strand, within MMJJ_RS00670 at 131.011 kb on - strand, within MMJJ_RS00670 at 131.012 kb on + strand, within MMJJ_RS00670 at 131.012 kb on + strand, within MMJJ_RS00670 at 131.012 kb on + strand, within MMJJ_RS00670 at 131.012 kb on + strand, within MMJJ_RS00670 at 131.012 kb on + strand, within MMJJ_RS00670 at 131.013 kb on - strand, within MMJJ_RS00670 at 131.013 kb on - strand, within MMJJ_RS00670 at 131.116 kb on - strand, within MMJJ_RS00670 at 131.116 kb on - strand, within MMJJ_RS00670 at 131.117 kb on + strand, within MMJJ_RS00670 at 131.117 kb on + strand, within MMJJ_RS00670 at 131.163 kb on + strand at 131.170 kb on - strand at 131.170 kb on - strand at 131.180 kb on - strand at 131.221 kb on - strand at 131.221 kb on - strand at 131.221 kb on - strand at 131.221 kb on - strand at 131.222 kb on + strand at 131.230 kb on - strand at 131.230 kb on - strand at 131.230 kb on - strand at 131.230 kb on - strand at 131.231 kb on + strand at 131.231 kb on + strand at 131.231 kb on + strand at 131.231 kb on + strand at 131.233 kb on - strand at 131.233 kb on - strand at 131.233 kb on - strand at 131.233 kb on - strand at 131.233 kb on - strand at 131.233 kb on - strand at 131.234 kb on + strand at 131.234 kb on + strand at 131.237 kb on - strand at 131.237 kb on - strand at 131.237 kb on - strand at 131.237 kb on - strand at 131.238 kb on + strand at 131.238 kb on + strand at 131.246 kb on + strand at 131.246 kb on + strand at 131.246 kb on + strand at 131.257 kb on - strand at 131.258 kb on + strand at 131.259 kb on - strand at 131.298 kb on - strand, within MMJJ_RS00675 at 131.299 kb on + strand, within MMJJ_RS00675 at 131.299 kb on + strand, within MMJJ_RS00675 at 131.299 kb on + strand, within MMJJ_RS00675 at 131.317 kb on - strand, within MMJJ_RS00675 at 131.318 kb on + strand, within MMJJ_RS00675 at 131.432 kb on - strand, within MMJJ_RS00675 at 131.461 kb on - strand, within MMJJ_RS00675 at 131.565 kb on + strand, within MMJJ_RS00675 at 131.656 kb on - strand, within MMJJ_RS00675 at 131.656 kb on - strand, within MMJJ_RS00675 at 131.656 kb on - strand, within MMJJ_RS00675 at 131.660 kb on - strand, within MMJJ_RS00675 at 131.660 kb on - strand, within MMJJ_RS00675 at 131.672 kb on - strand, within MMJJ_RS00675 at 131.686 kb on - strand, within MMJJ_RS00675 at 131.732 kb on - strand, within MMJJ_RS00675 at 131.733 kb on + strand, within MMJJ_RS00675 at 131.738 kb on - strand, within MMJJ_RS00675 at 131.742 kb on - strand, within MMJJ_RS00675 at 131.743 kb on + strand, within MMJJ_RS00675 at 131.806 kb on - strand, within MMJJ_RS00675 at 131.912 kb on + strand, within MMJJ_RS00675 at 131.945 kb on - strand, within MMJJ_RS00675 at 131.945 kb on - strand, within MMJJ_RS00675 at 132.018 kb on + strand, within MMJJ_RS00675 at 132.068 kb on + strand, within MMJJ_RS00675 at 132.097 kb on - strand, within MMJJ_RS00675 at 132.097 kb on - strand, within MMJJ_RS00675 at 132.097 kb on - strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.098 kb on + strand, within MMJJ_RS00675 at 132.103 kb on - strand, within MMJJ_RS00675 at 132.103 kb on - strand, within MMJJ_RS00675
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 129,846 + MMJJ_RS00665 0.68 +2.1 129,846 + MMJJ_RS00665 0.68 -4.2 129,865 - MMJJ_RS00665 0.70 +4.0 129,865 - MMJJ_RS00665 0.70 -1.5 129,866 + MMJJ_RS00665 0.70 +1.5 129,867 - MMJJ_RS00665 0.70 -3.2 129,870 + MMJJ_RS00665 0.70 -0.9 129,965 + MMJJ_RS00665 0.77 +1.1 129,996 - MMJJ_RS00665 0.80 +0.7 130,026 - MMJJ_RS00665 0.82 -3.8 130,034 + MMJJ_RS00665 0.83 +2.3 130,043 - MMJJ_RS00665 0.83 +0.5 130,043 - MMJJ_RS00665 0.83 -1.3 130,043 - MMJJ_RS00665 0.83 +1.2 130,043 - MMJJ_RS00665 0.83 -1.1 130,044 + MMJJ_RS00665 0.83 -3.0 130,044 + MMJJ_RS00665 0.83 -0.3 130,044 + MMJJ_RS00665 0.83 -0.4 130,053 - MMJJ_RS00665 0.84 -2.1 130,053 - MMJJ_RS00665 0.84 +4.9 130,069 - MMJJ_RS00665 0.85 -3.0 130,069 - MMJJ_RS00665 0.85 +1.8 130,069 - MMJJ_RS00665 0.85 -0.7 130,070 + MMJJ_RS00665 0.85 -2.5 130,070 + MMJJ_RS00665 0.85 +2.9 130,070 + MMJJ_RS00665 0.85 -0.9 130,070 + MMJJ_RS00665 0.85 -1.7 130,076 + MMJJ_RS00665 0.86 +3.1 130,140 - +1.8 130,140 - -1.0 130,140 - +0.5 130,141 + +1.1 130,141 + -3.3 130,153 + +3.3 130,178 - +6.6 130,179 + -2.9 130,226 - +0.1 130,227 + -3.6 130,232 + +2.2 130,232 + -2.2 130,234 - -1.8 130,236 - +3.8 130,237 + +0.9 130,249 - +1.5 130,271 - +3.1 130,271 - -0.9 130,272 + -0.9 130,272 + -1.5 130,317 - +3.4 130,317 - -0.0 130,317 - +4.8 130,317 - -2.4 130,317 - +3.9 130,318 + +0.1 130,319 - +1.1 130,319 - +5.5 130,319 - +2.7 130,320 + -0.2 130,320 + +5.0 130,320 + +2.4 130,343 - +0.5 130,344 + +1.6 130,394 - +5.1 130,394 - -0.7 130,394 - +0.6 130,394 - -2.3 130,395 + +1.3 130,440 - +2.6 130,440 - -1.4 130,440 - -0.3 130,440 - +0.1 130,441 + +0.1 130,441 + -0.1 130,441 + +0.4 130,444 + +1.1 130,445 - +1.4 130,445 - -0.9 130,445 - +1.4 130,445 - -1.4 130,450 - +1.6 130,450 - +1.0 130,450 - +0.8 130,451 + +3.7 130,451 + +0.7 130,451 + +1.9 130,488 + +2.2 130,488 + -2.5 130,489 - -2.5 130,489 - +0.5 130,489 - +1.6 130,489 - +0.8 130,490 + +4.6 130,498 - -2.9 130,521 - +0.7 130,521 - +2.0 130,522 + -2.2 130,522 + +0.1 130,522 + -0.0 130,525 - +4.9 130,525 - -2.2 130,530 - -1.1 130,531 + -1.1 130,534 - -0.9 130,553 + +2.0 130,563 + +0.6 130,572 + +1.7 130,572 + +1.4 130,597 - -1.7 130,640 - +2.1 130,640 - +0.4 130,640 - +1.7 130,641 + +1.0 130,656 + +2.2 130,701 - -3.1 130,729 - -1.3 130,735 - +4.3 130,891 - MMJJ_RS00670 0.17 +3.2 130,985 - MMJJ_RS00670 0.46 -1.3 130,985 - MMJJ_RS00670 0.46 -1.7 130,986 + MMJJ_RS00670 0.46 -0.5 130,986 + MMJJ_RS00670 0.46 -0.1 130,986 + MMJJ_RS00670 0.46 +1.0 131,011 - MMJJ_RS00670 0.54 +0.5 131,011 - MMJJ_RS00670 0.54 -1.2 131,011 - MMJJ_RS00670 0.54 +0.2 131,011 - MMJJ_RS00670 0.54 +2.0 131,012 + MMJJ_RS00670 0.55 -0.5 131,012 + MMJJ_RS00670 0.55 +2.7 131,012 + MMJJ_RS00670 0.55 +1.1 131,012 + MMJJ_RS00670 0.55 +0.7 131,012 + MMJJ_RS00670 0.55 +1.2 131,013 - MMJJ_RS00670 0.55 +0.8 131,013 - MMJJ_RS00670 0.55 -0.1 131,116 - MMJJ_RS00670 0.87 +3.9 131,116 - MMJJ_RS00670 0.87 +1.5 131,117 + MMJJ_RS00670 0.87 +1.1 131,117 + MMJJ_RS00670 0.87 +0.2 131,163 + +1.6 131,170 - -0.5 131,170 - -0.0 131,180 - -1.5 131,221 - -1.6 131,221 - +1.1 131,221 - -2.2 131,221 - +3.0 131,222 + +2.1 131,230 - -2.6 131,230 - -0.7 131,230 - +1.8 131,230 - -0.0 131,231 + +2.8 131,231 + -1.7 131,231 + +0.1 131,231 + -1.6 131,233 - +0.8 131,233 - -0.5 131,233 - -2.0 131,233 - -0.2 131,233 - +0.3 131,233 - +0.8 131,234 + -0.5 131,234 + -0.1 131,237 - -1.9 131,237 - +2.6 131,237 - -0.4 131,237 - +0.8 131,238 + +0.1 131,238 + +0.2 131,246 + -1.3 131,246 + +2.1 131,246 + -0.7 131,257 - +0.4 131,258 + +0.3 131,259 - -2.4 131,298 - MMJJ_RS00675 0.13 -1.3 131,299 + MMJJ_RS00675 0.13 +1.1 131,299 + MMJJ_RS00675 0.13 -3.0 131,299 + MMJJ_RS00675 0.13 -1.0 131,317 - MMJJ_RS00675 0.14 +1.2 131,318 + MMJJ_RS00675 0.14 +0.4 131,432 - MMJJ_RS00675 0.22 +0.7 131,461 - MMJJ_RS00675 0.25 -0.5 131,565 + MMJJ_RS00675 0.32 -2.6 131,656 - MMJJ_RS00675 0.39 -2.6 131,656 - MMJJ_RS00675 0.39 -2.5 131,656 - MMJJ_RS00675 0.39 +1.0 131,660 - MMJJ_RS00675 0.39 +1.3 131,660 - MMJJ_RS00675 0.39 +0.2 131,672 - MMJJ_RS00675 0.40 +1.5 131,686 - MMJJ_RS00675 0.41 +1.3 131,732 - MMJJ_RS00675 0.44 -0.2 131,733 + MMJJ_RS00675 0.44 +1.4 131,738 - MMJJ_RS00675 0.45 +1.1 131,742 - MMJJ_RS00675 0.45 -1.5 131,743 + MMJJ_RS00675 0.45 +1.1 131,806 - MMJJ_RS00675 0.50 +1.1 131,912 + MMJJ_RS00675 0.57 +1.7 131,945 - MMJJ_RS00675 0.60 +0.2 131,945 - MMJJ_RS00675 0.60 +1.5 132,018 + MMJJ_RS00675 0.65 +1.5 132,068 + MMJJ_RS00675 0.69 -0.3 132,097 - MMJJ_RS00675 0.71 -3.7 132,097 - MMJJ_RS00675 0.71 -2.5 132,097 - MMJJ_RS00675 0.71 -0.1 132,098 + MMJJ_RS00675 0.71 +1.6 132,098 + MMJJ_RS00675 0.71 +0.4 132,098 + MMJJ_RS00675 0.71 -2.2 132,098 + MMJJ_RS00675 0.71 +2.4 132,098 + MMJJ_RS00675 0.71 -3.6 132,098 + MMJJ_RS00675 0.71 -2.1 132,098 + MMJJ_RS00675 0.71 -2.8 132,098 + MMJJ_RS00675 0.71 -1.1 132,103 - MMJJ_RS00675 0.71 +0.5 132,103 - MMJJ_RS00675 0.71 +1.0
Or see this region's nucleotide sequence