Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00655

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS00650 and MMJJ_RS00655 are separated by 8 nucleotidesMMJJ_RS00655 and MMJJ_RS00660 are separated by 147 nucleotidesMMJJ_RS00660 and MMJJ_RS00665 are separated by 0 nucleotides MMJJ_RS00650: MMJJ_RS00650 - cation:proton antiporter, at 126,335 to 127,501 _RS00650 MMJJ_RS00655: MMJJ_RS00655 - CBS domain-containing protein, at 127,510 to 127,986 _RS00655 MMJJ_RS00660: MMJJ_RS00660 - putative beta-lysine N-acetyltransferase, at 128,134 to 128,958 _RS00660 MMJJ_RS00665: MMJJ_RS00665 - lysine 2,3-aminomutase, at 128,959 to 130,260 _RS00665 Position (kb) 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 126.524 kb on + strand, within MMJJ_RS00650at 126.542 kb on - strand, within MMJJ_RS00650at 126.574 kb on - strand, within MMJJ_RS00650at 126.587 kb on - strand, within MMJJ_RS00650at 126.588 kb on + strand, within MMJJ_RS00650at 126.593 kb on - strand, within MMJJ_RS00650at 126.594 kb on + strand, within MMJJ_RS00650at 126.615 kb on + strand, within MMJJ_RS00650at 126.641 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.684 kb on + strand, within MMJJ_RS00650at 126.835 kb on - strand, within MMJJ_RS00650at 126.836 kb on + strand, within MMJJ_RS00650at 127.002 kb on + strand, within MMJJ_RS00650at 127.115 kb on - strand, within MMJJ_RS00650at 127.130 kb on + strand, within MMJJ_RS00650at 127.141 kb on - strand, within MMJJ_RS00650at 127.155 kb on - strand, within MMJJ_RS00650at 127.155 kb on - strand, within MMJJ_RS00650at 127.156 kb on + strand, within MMJJ_RS00650at 127.169 kb on + strand, within MMJJ_RS00650at 127.215 kb on + strand, within MMJJ_RS00650at 127.215 kb on + strand, within MMJJ_RS00650at 127.247 kb on - strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.254 kb on + strand, within MMJJ_RS00650at 127.406 kb on - strandat 127.433 kb on - strandat 127.434 kb on + strandat 127.459 kb on - strandat 127.478 kb on + strandat 127.533 kb on - strandat 127.534 kb on + strandat 127.534 kb on + strandat 127.534 kb on + strandat 127.594 kb on - strand, within MMJJ_RS00655at 127.681 kb on - strand, within MMJJ_RS00655at 127.789 kb on - strand, within MMJJ_RS00655at 127.789 kb on - strand, within MMJJ_RS00655at 127.789 kb on - strand, within MMJJ_RS00655at 127.802 kb on + strand, within MMJJ_RS00655at 127.860 kb on - strand, within MMJJ_RS00655at 127.860 kb on - strand, within MMJJ_RS00655at 127.861 kb on + strand, within MMJJ_RS00655at 127.864 kb on - strand, within MMJJ_RS00655at 127.864 kb on - strand, within MMJJ_RS00655at 127.864 kb on - strand, within MMJJ_RS00655at 127.896 kb on - strand, within MMJJ_RS00655at 127.896 kb on - strand, within MMJJ_RS00655at 127.900 kb on - strand, within MMJJ_RS00655at 127.900 kb on - strand, within MMJJ_RS00655at 127.900 kb on - strand, within MMJJ_RS00655at 127.901 kb on + strand, within MMJJ_RS00655at 127.914 kb on - strand, within MMJJ_RS00655at 127.915 kb on + strand, within MMJJ_RS00655at 127.955 kb on - strandat 128.001 kb on - strandat 128.008 kb on + strandat 128.011 kb on + strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.013 kb on + strandat 128.018 kb on + strandat 128.032 kb on - strandat 128.032 kb on - strandat 128.037 kb on + strandat 128.069 kb on + strandat 128.070 kb on - strandat 128.070 kb on - strandat 128.070 kb on - strandat 128.070 kb on - strandat 128.070 kb on - strandat 128.071 kb on + strandat 128.071 kb on + strandat 128.071 kb on + strandat 128.071 kb on + strandat 128.120 kb on + strandat 128.135 kb on - strandat 128.136 kb on + strandat 128.184 kb on - strandat 128.191 kb on + strandat 128.213 kb on - strandat 128.217 kb on - strand, within MMJJ_RS00660at 128.217 kb on - strand, within MMJJ_RS00660at 128.218 kb on + strand, within MMJJ_RS00660at 128.253 kb on + strand, within MMJJ_RS00660at 128.259 kb on - strand, within MMJJ_RS00660at 128.277 kb on + strand, within MMJJ_RS00660at 128.317 kb on - strand, within MMJJ_RS00660at 128.317 kb on - strand, within MMJJ_RS00660at 128.319 kb on - strand, within MMJJ_RS00660at 128.319 kb on - strand, within MMJJ_RS00660at 128.319 kb on - strand, within MMJJ_RS00660at 128.320 kb on + strand, within MMJJ_RS00660at 128.321 kb on - strand, within MMJJ_RS00660at 128.321 kb on - strand, within MMJJ_RS00660at 128.322 kb on + strand, within MMJJ_RS00660at 128.322 kb on + strand, within MMJJ_RS00660at 128.322 kb on + strand, within MMJJ_RS00660at 128.322 kb on + strand, within MMJJ_RS00660at 128.322 kb on + strand, within MMJJ_RS00660at 128.323 kb on - strand, within MMJJ_RS00660at 128.324 kb on + strand, within MMJJ_RS00660at 128.324 kb on + strand, within MMJJ_RS00660at 128.324 kb on + strand, within MMJJ_RS00660at 128.326 kb on - strand, within MMJJ_RS00660at 128.327 kb on + strand, within MMJJ_RS00660at 128.331 kb on + strand, within MMJJ_RS00660at 128.394 kb on - strand, within MMJJ_RS00660at 128.395 kb on + strand, within MMJJ_RS00660at 128.395 kb on + strand, within MMJJ_RS00660at 128.400 kb on - strand, within MMJJ_RS00660at 128.442 kb on - strand, within MMJJ_RS00660at 128.452 kb on - strand, within MMJJ_RS00660at 128.454 kb on - strand, within MMJJ_RS00660at 128.459 kb on - strand, within MMJJ_RS00660at 128.486 kb on + strand, within MMJJ_RS00660at 128.488 kb on - strand, within MMJJ_RS00660at 128.489 kb on + strand, within MMJJ_RS00660at 128.490 kb on - strand, within MMJJ_RS00660at 128.492 kb on - strand, within MMJJ_RS00660at 128.493 kb on + strand, within MMJJ_RS00660at 128.527 kb on + strand, within MMJJ_RS00660at 128.621 kb on + strand, within MMJJ_RS00660at 128.621 kb on + strand, within MMJJ_RS00660at 128.639 kb on - strandat 128.710 kb on + strand, within MMJJ_RS00660at 128.714 kb on - strand, within MMJJ_RS00660at 128.714 kb on - strand, within MMJJ_RS00660at 128.715 kb on + strand, within MMJJ_RS00660at 128.715 kb on + strand, within MMJJ_RS00660at 128.735 kb on - strand, within MMJJ_RS00660at 128.760 kb on - strand, within MMJJ_RS00660at 128.761 kb on + strand, within MMJJ_RS00660at 128.761 kb on + strand, within MMJJ_RS00660at 128.839 kb on - strand, within MMJJ_RS00660at 128.839 kb on - strand, within MMJJ_RS00660at 128.856 kb on - strand, within MMJJ_RS00660at 128.894 kb on - strandat 128.939 kb on + strandat 128.960 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
remove
126,524 + MMJJ_RS00650 0.16 -0.9
126,542 - MMJJ_RS00650 0.18 +1.3
126,574 - MMJJ_RS00650 0.20 +1.4
126,587 - MMJJ_RS00650 0.22 -1.9
126,588 + MMJJ_RS00650 0.22 -0.5
126,593 - MMJJ_RS00650 0.22 +0.6
126,594 + MMJJ_RS00650 0.22 +0.1
126,615 + MMJJ_RS00650 0.24 +2.5
126,641 - MMJJ_RS00650 0.26 -2.8
126,663 - MMJJ_RS00650 0.28 +3.0
126,663 - MMJJ_RS00650 0.28 -1.5
126,663 - MMJJ_RS00650 0.28 +1.5
126,663 - MMJJ_RS00650 0.28 +1.1
126,663 - MMJJ_RS00650 0.28 +3.2
126,684 + MMJJ_RS00650 0.30 -0.5
126,835 - MMJJ_RS00650 0.43 -0.9
126,836 + MMJJ_RS00650 0.43 -0.3
127,002 + MMJJ_RS00650 0.57 -0.1
127,115 - MMJJ_RS00650 0.67 -1.3
127,130 + MMJJ_RS00650 0.68 -0.7
127,141 - MMJJ_RS00650 0.69 -1.7
127,155 - MMJJ_RS00650 0.70 +2.5
127,155 - MMJJ_RS00650 0.70 +0.7
127,156 + MMJJ_RS00650 0.70 -0.5
127,169 + MMJJ_RS00650 0.71 +0.5
127,215 + MMJJ_RS00650 0.75 -1.7
127,215 + MMJJ_RS00650 0.75 -2.3
127,247 - MMJJ_RS00650 0.78 -0.7
127,248 + MMJJ_RS00650 0.78 -0.3
127,248 + MMJJ_RS00650 0.78 +1.6
127,248 + MMJJ_RS00650 0.78 -3.8
127,248 + MMJJ_RS00650 0.78 -3.5
127,254 + MMJJ_RS00650 0.79 +1.6
127,406 - +0.8
127,433 - +1.4
127,434 + -1.5
127,459 - +2.0
127,478 + -0.1
127,533 - +3.4
127,534 + +2.4
127,534 + -0.6
127,534 + -1.9
127,594 - MMJJ_RS00655 0.18 -0.5
127,681 - MMJJ_RS00655 0.36 -0.3
127,789 - MMJJ_RS00655 0.58 +2.0
127,789 - MMJJ_RS00655 0.58 +1.3
127,789 - MMJJ_RS00655 0.58 +2.6
127,802 + MMJJ_RS00655 0.61 +3.0
127,860 - MMJJ_RS00655 0.73 -0.4
127,860 - MMJJ_RS00655 0.73 -1.7
127,861 + MMJJ_RS00655 0.74 -0.1
127,864 - MMJJ_RS00655 0.74 +1.5
127,864 - MMJJ_RS00655 0.74 -1.0
127,864 - MMJJ_RS00655 0.74 -2.0
127,896 - MMJJ_RS00655 0.81 +6.4
127,896 - MMJJ_RS00655 0.81 -1.7
127,900 - MMJJ_RS00655 0.82 +1.5
127,900 - MMJJ_RS00655 0.82 +0.1
127,900 - MMJJ_RS00655 0.82 +0.1
127,901 + MMJJ_RS00655 0.82 -0.1
127,914 - MMJJ_RS00655 0.85 -0.8
127,915 + MMJJ_RS00655 0.85 +0.9
127,955 - +0.2
128,001 - -0.9
128,008 + +2.2
128,011 + +1.2
128,012 - -3.4
128,012 - +2.7
128,012 - -2.4
128,012 - +1.3
128,013 + -1.5
128,018 + +0.6
128,032 - -0.5
128,032 - -2.6
128,037 + -2.5
128,069 + -1.2
128,070 - +1.9
128,070 - +1.1
128,070 - -2.0
128,070 - -0.7
128,070 - -1.7
128,071 + +2.9
128,071 + -0.4
128,071 + -0.6
128,071 + +0.6
128,120 + -1.4
128,135 - +3.9
128,136 + -0.3
128,184 - +1.2
128,191 + -4.4
128,213 - -0.3
128,217 - MMJJ_RS00660 0.10 +0.6
128,217 - MMJJ_RS00660 0.10 -0.9
128,218 + MMJJ_RS00660 0.10 -0.3
128,253 + MMJJ_RS00660 0.14 +5.3
128,259 - MMJJ_RS00660 0.15 +0.6
128,277 + MMJJ_RS00660 0.17 -1.5
128,317 - MMJJ_RS00660 0.22 +0.2
128,317 - MMJJ_RS00660 0.22 +0.1
128,319 - MMJJ_RS00660 0.22 +0.6
128,319 - MMJJ_RS00660 0.22 -1.6
128,319 - MMJJ_RS00660 0.22 +5.0
128,320 + MMJJ_RS00660 0.23 -0.2
128,321 - MMJJ_RS00660 0.23 +3.5
128,321 - MMJJ_RS00660 0.23 -0.5
128,322 + MMJJ_RS00660 0.23 +2.5
128,322 + MMJJ_RS00660 0.23 -0.9
128,322 + MMJJ_RS00660 0.23 +2.5
128,322 + MMJJ_RS00660 0.23 -2.3
128,322 + MMJJ_RS00660 0.23 +2.1
128,323 - MMJJ_RS00660 0.23 +1.5
128,324 + MMJJ_RS00660 0.23 -1.8
128,324 + MMJJ_RS00660 0.23 +0.5
128,324 + MMJJ_RS00660 0.23 +3.0
128,326 - MMJJ_RS00660 0.23 +2.9
128,327 + MMJJ_RS00660 0.23 +0.0
128,331 + MMJJ_RS00660 0.24 -1.3
128,394 - MMJJ_RS00660 0.32 -2.9
128,395 + MMJJ_RS00660 0.32 +2.2
128,395 + MMJJ_RS00660 0.32 +2.9
128,400 - MMJJ_RS00660 0.32 -1.1
128,442 - MMJJ_RS00660 0.37 -0.7
128,452 - MMJJ_RS00660 0.39 +2.7
128,454 - MMJJ_RS00660 0.39 +2.7
128,459 - MMJJ_RS00660 0.39 +1.6
128,486 + MMJJ_RS00660 0.43 -0.9
128,488 - MMJJ_RS00660 0.43 -1.0
128,489 + MMJJ_RS00660 0.43 +1.9
128,490 - MMJJ_RS00660 0.43 +2.8
128,492 - MMJJ_RS00660 0.43 +0.3
128,493 + MMJJ_RS00660 0.44 -1.5
128,527 + MMJJ_RS00660 0.48 +2.1
128,621 + MMJJ_RS00660 0.59 -2.3
128,621 + MMJJ_RS00660 0.59 -2.5
128,639 - +1.1
128,710 + MMJJ_RS00660 0.70 +2.8
128,714 - MMJJ_RS00660 0.70 -0.5
128,714 - MMJJ_RS00660 0.70 -0.9
128,715 + MMJJ_RS00660 0.70 -1.0
128,715 + MMJJ_RS00660 0.70 -0.4
128,735 - MMJJ_RS00660 0.73 -2.0
128,760 - MMJJ_RS00660 0.76 -0.9
128,761 + MMJJ_RS00660 0.76 -2.6
128,761 + MMJJ_RS00660 0.76 +1.3
128,839 - MMJJ_RS00660 0.85 -0.8
128,839 - MMJJ_RS00660 0.85 +3.0
128,856 - MMJJ_RS00660 0.88 -0.6
128,894 - +2.3
128,939 + -0.5
128,960 - -1.9

Or see this region's nucleotide sequence