Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00645

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
123,956	-		MMJJ_RS00640	0.15	+0.1
124,003	+		MMJJ_RS00640	0.21	-1.5
124,015	-		MMJJ_RS00640	0.22	-0.7
124,038	+		MMJJ_RS00640	0.25	+1.3
124,072	-		MMJJ_RS00640	0.28	-0.1
124,073	+		MMJJ_RS00640	0.29	+2.1
124,110	-		MMJJ_RS00640	0.33	+0.3
124,150	-		MMJJ_RS00640	0.37	-2.8
124,150	-		MMJJ_RS00640	0.37	+1.7
124,151	+		MMJJ_RS00640	0.37	+0.7
124,151	+		MMJJ_RS00640	0.37	-0.7
124,188	+		MMJJ_RS00640	0.42	+1.2
124,191	-		MMJJ_RS00640	0.42	-1.1
124,191	-		MMJJ_RS00640	0.42	-2.8
124,191	-		MMJJ_RS00640	0.42	-1.5
124,192	+		MMJJ_RS00640	0.42	+2.9
124,192	+		MMJJ_RS00640	0.42	+1.5
124,192	+		MMJJ_RS00640	0.42	-0.7
124,197	-		MMJJ_RS00640	0.43	+1.2
124,197	-		MMJJ_RS00640	0.43	-1.8
124,197	-		MMJJ_RS00640	0.43	+0.1
124,197	-		MMJJ_RS00640	0.43	+1.7
124,198	+		MMJJ_RS00640	0.43	+1.4
124,198	+		MMJJ_RS00640	0.43	+2.8
124,198	+		MMJJ_RS00640	0.43	+2.4
124,211	+		MMJJ_RS00640	0.44	-1.9
124,229	+		MMJJ_RS00640	0.46	+0.4
124,247	+		MMJJ_RS00640	0.48	-0.9
124,289	-		MMJJ_RS00640	0.53	-2.5
124,296	+		MMJJ_RS00640	0.54	+2.2
124,296	+		MMJJ_RS00640	0.54	+0.5
124,320	-		MMJJ_RS00640	0.56	+0.8
124,320	-		MMJJ_RS00640	0.56	+2.1
124,328	+		MMJJ_RS00640	0.57	+0.2
124,391	-		MMJJ_RS00640	0.64	+0.5
124,412	+		MMJJ_RS00640	0.67	+1.8
124,415	-		MMJJ_RS00640	0.67	+0.1
124,483	-		MMJJ_RS00640	0.75	-2.1
124,484	+		MMJJ_RS00640	0.75	-0.2
124,484	+		MMJJ_RS00640	0.75	-0.5
124,504	-		MMJJ_RS00640	0.77	-2.2
124,504	-		MMJJ_RS00640	0.77	+1.5
124,505	+		MMJJ_RS00640	0.77	+0.6
124,505	+		MMJJ_RS00640	0.77	-0.3
124,505	+		MMJJ_RS00640	0.77	+2.4
124,506	-		MMJJ_RS00640	0.77	+1.6
124,506	-		MMJJ_RS00640	0.77	-1.3
124,507	+		MMJJ_RS00640	0.77	-0.3
124,511	-		MMJJ_RS00640	0.78	+1.5
124,511	-		MMJJ_RS00640	0.78	+3.1
124,512	+				+1.1
124,551	-		MMJJ_RS00640	0.82	-1.9
124,577	+		MMJJ_RS00640	0.85	+3.2
124,605	-		MMJJ_RS00640	0.89	+1.4
124,605	-		MMJJ_RS00640	0.89	-1.3
124,605	-		MMJJ_RS00640	0.89	-0.5
124,605	-		MMJJ_RS00640	0.89	+1.4
124,605	-		MMJJ_RS00640	0.89	-1.5
124,606	+		MMJJ_RS00640	0.89	+0.5
124,611	-		MMJJ_RS00640	0.89	-2.5
124,612	+		MMJJ_RS00640	0.89	+1.2
124,612	+		MMJJ_RS00640	0.89	+1.5
124,715	-				-2.6
124,717	-				+0.2
124,717	-				-0.9
124,759	+				+1.0
124,791	-				+1.0
124,793	-				-1.5
124,793	-				-0.6
124,793	-				-1.1
124,794	+				-3.0
124,809	+				+0.4
124,820	+				-1.5
124,820	+				+0.1
124,823	+				+1.7
124,924	+				-1.3
124,963	-				-1.9
125,013	+				+0.2
125,035	-		MMJJ_RS00645	0.11	-0.5
125,125	+		MMJJ_RS00645	0.18	-2.1
125,284	+		MMJJ_RS00645	0.29	-1.7
125,408	-		MMJJ_RS00645	0.38	-1.2
125,409	+		MMJJ_RS00645	0.38	-2.1
125,444	+		MMJJ_RS00645	0.40	+0.9
125,451	-		MMJJ_RS00645	0.41	-0.4
125,598	-		MMJJ_RS00645	0.51	-0.9
125,598	-		MMJJ_RS00645	0.51	-2.9
125,599	+		MMJJ_RS00645	0.51	-0.8
125,614	+		MMJJ_RS00645	0.52	-2.5
125,659	+		MMJJ_RS00645	0.56	-1.8
125,661	-		MMJJ_RS00645	0.56	-1.0
125,662	+		MMJJ_RS00645	0.56	-2.4
125,662	+		MMJJ_RS00645	0.56	-1.3
125,663	-		MMJJ_RS00645	0.56	-3.2
125,667	+		MMJJ_RS00645	0.56	-1.1
125,667	+		MMJJ_RS00645	0.56	-2.4
125,669	-		MMJJ_RS00645	0.56	-1.5
125,670	+		MMJJ_RS00645	0.56	-0.3
125,670	+		MMJJ_RS00645	0.56	-0.5
125,670	+		MMJJ_RS00645	0.56	-0.7
125,714	+		MMJJ_RS00645	0.59	-0.6
125,733	+		MMJJ_RS00645	0.61	-1.9
125,804	-		MMJJ_RS00645	0.66	-2.4
125,805	+		MMJJ_RS00645	0.66	-0.3
125,826	+		MMJJ_RS00645	0.67	-0.9
125,860	+		MMJJ_RS00645	0.70	+0.4
125,860	+		MMJJ_RS00645	0.70	+0.1
125,884	-		MMJJ_RS00645	0.72	-1.7
125,885	+		MMJJ_RS00645	0.72	-2.6
125,901	+		MMJJ_RS00645	0.73	-1.5
125,903	-		MMJJ_RS00645	0.73	-0.9
125,903	-		MMJJ_RS00645	0.73	-1.5
125,904	+		MMJJ_RS00645	0.73	-1.7
125,963	-		MMJJ_RS00645	0.77	-0.5
125,981	-		MMJJ_RS00645	0.78	-2.3
126,046	-		MMJJ_RS00645	0.83	+0.1
126,076	+		MMJJ_RS00645	0.85	-1.1
126,197	-				-1.0
126,281	+				+0.2
126,281	+				-1.9
126,331	-				+0.4
126,332	+				-3.5
126,332	+				+0.2
126,333	-				-0.7
126,337	+				-0.5
126,353	-				-0.9
126,370	-				-1.5
126,370	-				-2.0
126,370	-				+4.0
126,370	-				+1.8
126,371	+				-2.3
126,386	+				+0.7
126,393	+				-0.0
126,524	+		MMJJ_RS00650	0.16	-0.9
126,542	-		MMJJ_RS00650	0.18	+1.3
126,574	-		MMJJ_RS00650	0.20	+1.4
126,587	-		MMJJ_RS00650	0.22	-1.9
126,588	+		MMJJ_RS00650	0.22	-0.5
126,593	-		MMJJ_RS00650	0.22	+0.6
126,594	+		MMJJ_RS00650	0.22	+0.1
126,615	+		MMJJ_RS00650	0.24	+2.5
126,641	-		MMJJ_RS00650	0.26	-2.8
126,663	-		MMJJ_RS00650	0.28	+3.0
126,663	-		MMJJ_RS00650	0.28	-1.5
126,663	-		MMJJ_RS00650	0.28	+1.5
126,663	-		MMJJ_RS00650	0.28	+1.1
126,663	-		MMJJ_RS00650	0.28	+3.2
126,684	+		MMJJ_RS00650	0.30	-0.5
126,835	-		MMJJ_RS00650	0.43	-0.9
126,836	+		MMJJ_RS00650	0.43	-0.3
127,002	+		MMJJ_RS00650	0.57	-0.1
127,115	-		MMJJ_RS00650	0.67	-1.3
127,130	+		MMJJ_RS00650	0.68	-0.7
127,141	-		MMJJ_RS00650	0.69	-1.7
127,155	-		MMJJ_RS00650	0.70	+2.5
127,155	-		MMJJ_RS00650	0.70	+0.7
127,156	+		MMJJ_RS00650	0.70	-0.5
127,169	+		MMJJ_RS00650	0.71	+0.5
127,215	+		MMJJ_RS00650	0.75	-1.7
127,215	+		MMJJ_RS00650	0.75	-2.3
127,247	-		MMJJ_RS00650	0.78	-0.7
127,248	+		MMJJ_RS00650	0.78	-0.3
127,248	+		MMJJ_RS00650	0.78	+1.6
127,248	+		MMJJ_RS00650	0.78	-3.8
127,248	+		MMJJ_RS00650	0.78	-3.5
127,254	+		MMJJ_RS00650	0.79	+1.6