Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00600

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
113,092	-		MMJJ_RS00595	0.50	-1.9
113,173	-		MMJJ_RS00595	0.54	+1.6
113,174	+		MMJJ_RS00595	0.54	+0.9
113,355	+		MMJJ_RS00595	0.65	-0.3
113,355	+		MMJJ_RS00595	0.65	+1.1
113,364	-		MMJJ_RS00595	0.65	-3.6
113,425	-		MMJJ_RS00595	0.69	-2.3
113,431	-		MMJJ_RS00595	0.69	+0.3
113,517	-		MMJJ_RS00595	0.74	-0.4
113,517	-		MMJJ_RS00595	0.74	-3.2
113,518	+		MMJJ_RS00595	0.74	+1.1
113,519	-		MMJJ_RS00595	0.74	-2.3
113,520	+		MMJJ_RS00595	0.75	+3.1
113,520	+		MMJJ_RS00595	0.75	-2.3
113,534	+		MMJJ_RS00595	0.75	+1.6
113,700	+		MMJJ_RS00595	0.85	-1.5
113,703	-		MMJJ_RS00595	0.85	-0.5
113,704	+		MMJJ_RS00595	0.85	-1.6
113,738	-		MMJJ_RS00595	0.87	+0.3
113,768	+		MMJJ_RS00595	0.89	-3.2
113,784	-		MMJJ_RS00595	0.90	-0.4
113,784	-		MMJJ_RS00595	0.90	-0.6
113,784	-		MMJJ_RS00595	0.90	-4.0
113,784	-		MMJJ_RS00595	0.90	-1.9
113,784	-		MMJJ_RS00595	0.90	-0.4
113,921	+				+1.3
113,921	+				+0.2
113,921	+				-2.1
113,946	-				+1.0
113,980	-				-0.6
113,981	+				+0.3
113,981	+				+3.6
113,998	-				-2.9
114,047	-				-2.4
114,048	+				+1.8
114,048	+				-0.7
114,050	-				-2.2
114,051	+				-1.3
114,051	+				+2.1
114,309	+		MMJJ_RS00600	0.29	+0.1
114,309	+		MMJJ_RS00600	0.29	-0.5
114,539	+		MMJJ_RS00600	0.54	-1.1
114,610	-		MMJJ_RS00600	0.62	-0.2
114,611	+		MMJJ_RS00600	0.62	-2.1
114,863	+		MMJJ_RS00600	0.89	-0.5
114,976	-				-1.4
115,041	-				+2.3
115,041	-				+0.6
115,042	+				-0.5
115,043	-				-3.2
115,043	-				+0.1
115,044	+				+1.7
115,046	-				+1.0
115,046	-				+0.8
115,056	+				-2.8
115,066	-				+0.3
115,067	+				+1.1
115,071	+				-1.8
115,113	-				+2.0
115,162	+				-0.3
115,162	+				-0.2
115,174	+				-2.7
115,192	+				-0.1
115,215	+		MMJJ_RS00605	0.11	-2.1
115,246	-		MMJJ_RS00605	0.14	+0.6
115,247	+		MMJJ_RS00605	0.14	+1.1
115,247	+		MMJJ_RS00605	0.14	+1.1
115,269	-		MMJJ_RS00605	0.16	-2.4
115,278	-		MMJJ_RS00605	0.16	+3.0
115,346	-		MMJJ_RS00605	0.22	+1.6
115,483	+		MMJJ_RS00605	0.34	-2.8
115,495	+		MMJJ_RS00605	0.35	-0.5
115,581	+		MMJJ_RS00605	0.42	+0.1
115,600	+		MMJJ_RS00605	0.43	-1.3
115,600	+		MMJJ_RS00605	0.43	+2.9
115,640	+		MMJJ_RS00605	0.47	-2.6
115,802	-		MMJJ_RS00605	0.60	-0.4
115,834	-		MMJJ_RS00605	0.63	-0.5
115,839	+		MMJJ_RS00605	0.63	-0.4
115,896	-		MMJJ_RS00605	0.68	+2.0
115,897	+		MMJJ_RS00605	0.68	-1.5