Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00550 and MMJJ_RS00555 are separated by 174 nucleotides MMJJ_RS00555 and MMJJ_RS00560 are separated by 124 nucleotides MMJJ_RS00560 and MMJJ_RS00565 are separated by 62 nucleotides
MMJJ_RS00550: MMJJ_RS00550 - AIR synthase-related protein, at 102,500 to 103,381
_RS00550
MMJJ_RS00555: MMJJ_RS00555 - hypothetical protein, at 103,556 to 103,897
_RS00555
MMJJ_RS00560: MMJJ_RS00560 - homoisocitrate dehydrogenase, at 104,022 to 105,041
_RS00560
MMJJ_RS00565: MMJJ_RS00565 - serine--tRNA ligase, at 105,104 to 106,648
_RS00565
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 103.031 kb on - strand, within MMJJ_RS00550 at 103.032 kb on + strand, within MMJJ_RS00550 at 103.046 kb on + strand, within MMJJ_RS00550 at 103.076 kb on - strand, within MMJJ_RS00550 at 103.077 kb on + strand, within MMJJ_RS00550 at 103.128 kb on - strand, within MMJJ_RS00550 at 103.128 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.166 kb on + strand, within MMJJ_RS00550 at 103.166 kb on + strand, within MMJJ_RS00550 at 103.194 kb on + strand, within MMJJ_RS00550 at 103.244 kb on - strand, within MMJJ_RS00550 at 103.245 kb on + strand, within MMJJ_RS00550 at 103.318 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.346 kb on - strand at 103.346 kb on - strand at 103.347 kb on + strand at 103.354 kb on + strand at 103.399 kb on - strand at 103.400 kb on + strand at 103.416 kb on + strand at 103.418 kb on + strand at 103.422 kb on - strand at 103.433 kb on + strand at 103.448 kb on - strand at 103.452 kb on - strand at 103.453 kb on + strand at 103.453 kb on + strand at 103.454 kb on - strand at 103.454 kb on - strand at 103.454 kb on - strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.460 kb on - strand at 103.460 kb on - strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.465 kb on + strand at 103.465 kb on + strand at 103.474 kb on + strand at 103.481 kb on + strand at 103.486 kb on - strand at 103.490 kb on - strand at 103.504 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.521 kb on - strand at 103.523 kb on - strand at 103.524 kb on + strand at 103.535 kb on + strand at 103.554 kb on - strand at 103.560 kb on - strand at 103.590 kb on - strand at 103.648 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.664 kb on + strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.670 kb on + strand, within MMJJ_RS00555 at 103.690 kb on - strand, within MMJJ_RS00555 at 103.715 kb on + strand, within MMJJ_RS00555 at 103.715 kb on + strand, within MMJJ_RS00555 at 103.762 kb on + strand, within MMJJ_RS00555 at 103.777 kb on - strand, within MMJJ_RS00555 at 103.793 kb on - strand, within MMJJ_RS00555 at 103.794 kb on + strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.886 kb on - strand at 103.895 kb on - strand at 103.896 kb on + strand at 103.896 kb on + strand at 103.899 kb on - strand at 103.900 kb on + strand at 103.902 kb on - strand at 103.903 kb on + strand at 103.907 kb on - strand at 103.908 kb on + strand at 103.911 kb on - strand at 103.912 kb on + strand at 103.912 kb on + strand at 103.934 kb on - strand at 103.934 kb on - strand at 103.935 kb on + strand at 103.938 kb on + strand at 103.938 kb on + strand at 103.938 kb on + strand at 103.944 kb on - strand at 103.945 kb on + strand at 103.970 kb on - strand at 103.982 kb on + strand at 104.101 kb on - strand at 104.273 kb on - strand, within MMJJ_RS00560 at 104.274 kb on + strand, within MMJJ_RS00560 at 104.334 kb on - strand, within MMJJ_RS00560 at 104.363 kb on + strand, within MMJJ_RS00560 at 104.542 kb on - strand, within MMJJ_RS00560 at 104.543 kb on + strand at 104.543 kb on + strand, within MMJJ_RS00560 at 104.633 kb on + strand, within MMJJ_RS00560 at 104.713 kb on - strand, within MMJJ_RS00560 at 104.891 kb on + strand, within MMJJ_RS00560 at 105.045 kb on - strand at 105.045 kb on - strand at 105.045 kb on - strand at 105.045 kb on - strand at 105.070 kb on + strand at 105.078 kb on - strand at 105.404 kb on - strand, within MMJJ_RS00565 at 105.869 kb on - strand at 105.869 kb on - strand at 105.912 kb on + strand, within MMJJ_RS00565
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 103,031 - MMJJ_RS00550 0.60 -2.4 103,032 + MMJJ_RS00550 0.60 -1.9 103,046 + MMJJ_RS00550 0.62 -1.7 103,076 - MMJJ_RS00550 0.65 -0.5 103,077 + MMJJ_RS00550 0.65 +1.1 103,128 - MMJJ_RS00550 0.71 -2.5 103,128 - MMJJ_RS00550 0.71 -1.3 103,165 - MMJJ_RS00550 0.75 -1.3 103,165 - MMJJ_RS00550 0.75 -2.7 103,165 - MMJJ_RS00550 0.75 +3.8 103,166 + MMJJ_RS00550 0.76 -2.4 103,166 + MMJJ_RS00550 0.76 -1.9 103,194 + MMJJ_RS00550 0.79 -1.3 103,244 - MMJJ_RS00550 0.84 -0.9 103,245 + MMJJ_RS00550 0.84 +0.9 103,318 - -0.8 103,339 - -1.3 103,339 - -2.1 103,339 - +0.1 103,339 - -1.9 103,339 - -1.7 103,340 + -2.6 103,340 + -0.9 103,340 + -1.4 103,340 + -3.1 103,346 - -1.9 103,346 - -0.5 103,347 + -1.2 103,354 + -2.1 103,399 - -3.1 103,400 + +1.3 103,416 + -0.3 103,418 + -0.2 103,422 - -0.5 103,433 + -2.1 103,448 - +1.4 103,452 - +0.8 103,453 + -2.5 103,453 + -3.0 103,454 - -0.8 103,454 - -1.3 103,454 - +1.6 103,455 + -1.3 103,455 + +3.1 103,460 - +1.4 103,460 - +1.0 103,461 + -0.6 103,461 + +4.7 103,461 + +1.2 103,461 + -2.6 103,461 + +2.5 103,461 + -1.9 103,461 + +3.8 103,464 - -0.1 103,464 - +0.9 103,464 - -2.6 103,464 - +1.1 103,464 - +2.3 103,464 - -1.1 103,465 + +0.1 103,465 + -0.7 103,474 + +2.0 103,481 + +0.6 103,486 - -0.3 103,490 - +1.4 103,504 + -1.9 103,506 + -0.4 103,506 + +3.8 103,521 - -0.9 103,523 - -0.1 103,524 + +1.2 103,535 + -2.7 103,554 - -3.5 103,560 - -0.3 103,590 - -3.1 103,648 - MMJJ_RS00555 0.27 -1.9 103,663 - MMJJ_RS00555 0.31 +2.5 103,663 - MMJJ_RS00555 0.31 -1.2 103,663 - MMJJ_RS00555 0.31 +1.1 103,664 + MMJJ_RS00555 0.32 +3.6 103,667 - MMJJ_RS00555 0.32 -1.2 103,667 - MMJJ_RS00555 0.32 +3.4 103,667 - MMJJ_RS00555 0.32 -1.1 103,667 - MMJJ_RS00555 0.32 +1.9 103,667 - MMJJ_RS00555 0.32 -0.5 103,668 + MMJJ_RS00555 0.33 -1.2 103,668 + MMJJ_RS00555 0.33 -1.7 103,668 + MMJJ_RS00555 0.33 -1.5 103,668 + MMJJ_RS00555 0.33 -1.7 103,668 + MMJJ_RS00555 0.33 +0.3 103,668 + MMJJ_RS00555 0.33 +1.1 103,670 + MMJJ_RS00555 0.33 -0.9 103,690 - MMJJ_RS00555 0.39 -2.6 103,715 + MMJJ_RS00555 0.46 -2.6 103,715 + MMJJ_RS00555 0.46 -1.5 103,762 + MMJJ_RS00555 0.60 -2.0 103,777 - MMJJ_RS00555 0.65 -1.5 103,793 - MMJJ_RS00555 0.69 -0.5 103,794 + MMJJ_RS00555 0.70 +4.0 103,813 - MMJJ_RS00555 0.75 +1.5 103,813 - MMJJ_RS00555 0.75 +1.2 103,813 - MMJJ_RS00555 0.75 -1.7 103,886 - +0.1 103,895 - -0.9 103,896 + -3.5 103,896 + +3.8 103,899 - -2.8 103,900 + -1.1 103,902 - +1.9 103,903 + -0.7 103,907 - +0.1 103,908 + +1.2 103,911 - +2.3 103,912 + -2.5 103,912 + +0.4 103,934 - -1.9 103,934 - -1.7 103,935 + -0.1 103,938 + -1.0 103,938 + +2.1 103,938 + -2.5 103,944 - -2.7 103,945 + +3.6 103,970 - +1.1 103,982 + -2.5 104,101 - -0.5 104,273 - MMJJ_RS00560 0.25 +1.1 104,274 + MMJJ_RS00560 0.25 -1.5 104,334 - MMJJ_RS00560 0.31 +0.8 104,363 + MMJJ_RS00560 0.33 -0.9 104,542 - MMJJ_RS00560 0.51 +1.1 104,543 + +0.1 104,543 + MMJJ_RS00560 0.51 -0.9 104,633 + MMJJ_RS00560 0.60 -1.7 104,713 - MMJJ_RS00560 0.68 -2.1 104,891 + MMJJ_RS00560 0.85 +2.1 105,045 - +0.9 105,045 - -0.3 105,045 - -1.2 105,045 - +1.9 105,070 + +0.1 105,078 - -2.1 105,404 - MMJJ_RS00565 0.19 -1.3 105,869 - +0.1 105,869 - -1.7 105,912 + MMJJ_RS00565 0.52 -1.9
Or see this region's nucleotide sequence