Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00545 and MMJJ_RS00550 are separated by 27 nucleotides MMJJ_RS00550 and MMJJ_RS00555 are separated by 174 nucleotides MMJJ_RS00555 and MMJJ_RS00560 are separated by 124 nucleotides
MMJJ_RS00545: MMJJ_RS00545 - hypothetical protein, at 101,507 to 102,472
_RS00545
MMJJ_RS00550: MMJJ_RS00550 - AIR synthase-related protein, at 102,500 to 103,381
_RS00550
MMJJ_RS00555: MMJJ_RS00555 - hypothetical protein, at 103,556 to 103,897
_RS00555
MMJJ_RS00560: MMJJ_RS00560 - homoisocitrate dehydrogenase, at 104,022 to 105,041
_RS00560
Position (kb) 102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 101.545 kb on + strand at 101.611 kb on + strand, within MMJJ_RS00545 at 101.627 kb on + strand, within MMJJ_RS00545 at 101.634 kb on - strand, within MMJJ_RS00545 at 101.662 kb on - strand, within MMJJ_RS00545 at 101.663 kb on + strand, within MMJJ_RS00545 at 101.673 kb on + strand, within MMJJ_RS00545 at 101.702 kb on + strand, within MMJJ_RS00545 at 101.773 kb on + strand, within MMJJ_RS00545 at 101.822 kb on - strand, within MMJJ_RS00545 at 101.854 kb on - strand, within MMJJ_RS00545 at 101.855 kb on + strand, within MMJJ_RS00545 at 101.881 kb on - strand, within MMJJ_RS00545 at 101.932 kb on - strand, within MMJJ_RS00545 at 102.046 kb on - strand, within MMJJ_RS00545 at 102.048 kb on - strand, within MMJJ_RS00545 at 102.112 kb on + strand, within MMJJ_RS00545 at 102.151 kb on - strand, within MMJJ_RS00545 at 102.152 kb on + strand, within MMJJ_RS00545 at 102.157 kb on + strand, within MMJJ_RS00545 at 102.179 kb on + strand, within MMJJ_RS00545 at 102.211 kb on - strand, within MMJJ_RS00545 at 102.211 kb on - strand, within MMJJ_RS00545 at 102.232 kb on - strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.235 kb on - strand, within MMJJ_RS00545 at 102.235 kb on - strand, within MMJJ_RS00545 at 102.236 kb on + strand, within MMJJ_RS00545 at 102.283 kb on + strand, within MMJJ_RS00545 at 102.295 kb on + strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.309 kb on + strand, within MMJJ_RS00545 at 102.315 kb on - strand, within MMJJ_RS00545 at 102.315 kb on - strand, within MMJJ_RS00545 at 102.316 kb on + strand, within MMJJ_RS00545 at 102.326 kb on - strand, within MMJJ_RS00545 at 102.327 kb on + strand, within MMJJ_RS00545 at 102.336 kb on - strand, within MMJJ_RS00545 at 102.337 kb on + strand, within MMJJ_RS00545 at 102.337 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.344 kb on + strand, within MMJJ_RS00545 at 102.368 kb on - strand, within MMJJ_RS00545 at 102.380 kb on - strand at 102.412 kb on - strand at 102.441 kb on - strand at 102.441 kb on - strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.485 kb on - strand at 102.490 kb on + strand at 102.525 kb on + strand at 102.527 kb on - strand at 102.528 kb on + strand at 102.548 kb on + strand at 102.553 kb on - strand at 102.554 kb on + strand at 102.593 kb on - strand, within MMJJ_RS00550 at 102.594 kb on + strand, within MMJJ_RS00550 at 102.612 kb on + strand, within MMJJ_RS00550 at 102.622 kb on - strand, within MMJJ_RS00550 at 102.622 kb on - strand, within MMJJ_RS00550 at 102.622 kb on - strand, within MMJJ_RS00550 at 102.622 kb on - strand, within MMJJ_RS00550 at 102.623 kb on + strand, within MMJJ_RS00550 at 102.646 kb on - strand, within MMJJ_RS00550 at 102.677 kb on - strand, within MMJJ_RS00550 at 102.677 kb on - strand, within MMJJ_RS00550 at 102.681 kb on - strand, within MMJJ_RS00550 at 102.681 kb on - strand, within MMJJ_RS00550 at 102.694 kb on + strand, within MMJJ_RS00550 at 102.694 kb on + strand, within MMJJ_RS00550 at 102.817 kb on - strand, within MMJJ_RS00550 at 102.837 kb on + strand, within MMJJ_RS00550 at 102.884 kb on + strand, within MMJJ_RS00550 at 102.911 kb on - strand, within MMJJ_RS00550 at 102.911 kb on - strand, within MMJJ_RS00550 at 102.912 kb on + strand, within MMJJ_RS00550 at 102.917 kb on - strand, within MMJJ_RS00550 at 102.918 kb on + strand, within MMJJ_RS00550 at 102.965 kb on + strand, within MMJJ_RS00550 at 102.983 kb on - strand, within MMJJ_RS00550 at 102.983 kb on - strand, within MMJJ_RS00550 at 102.984 kb on + strand, within MMJJ_RS00550 at 102.984 kb on + strand, within MMJJ_RS00550 at 102.984 kb on + strand, within MMJJ_RS00550 at 102.984 kb on + strand, within MMJJ_RS00550 at 103.031 kb on - strand, within MMJJ_RS00550 at 103.032 kb on + strand, within MMJJ_RS00550 at 103.046 kb on + strand, within MMJJ_RS00550 at 103.076 kb on - strand, within MMJJ_RS00550 at 103.077 kb on + strand, within MMJJ_RS00550 at 103.128 kb on - strand, within MMJJ_RS00550 at 103.128 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.165 kb on - strand, within MMJJ_RS00550 at 103.166 kb on + strand, within MMJJ_RS00550 at 103.166 kb on + strand, within MMJJ_RS00550 at 103.194 kb on + strand, within MMJJ_RS00550 at 103.244 kb on - strand, within MMJJ_RS00550 at 103.245 kb on + strand, within MMJJ_RS00550 at 103.318 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.339 kb on - strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.340 kb on + strand at 103.346 kb on - strand at 103.346 kb on - strand at 103.347 kb on + strand at 103.354 kb on + strand at 103.399 kb on - strand at 103.400 kb on + strand at 103.416 kb on + strand at 103.418 kb on + strand at 103.422 kb on - strand at 103.433 kb on + strand at 103.448 kb on - strand at 103.452 kb on - strand at 103.453 kb on + strand at 103.453 kb on + strand at 103.454 kb on - strand at 103.454 kb on - strand at 103.454 kb on - strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.460 kb on - strand at 103.460 kb on - strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.461 kb on + strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.464 kb on - strand at 103.465 kb on + strand at 103.465 kb on + strand at 103.474 kb on + strand at 103.481 kb on + strand at 103.486 kb on - strand at 103.490 kb on - strand at 103.504 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.521 kb on - strand at 103.523 kb on - strand at 103.524 kb on + strand at 103.535 kb on + strand at 103.554 kb on - strand at 103.560 kb on - strand at 103.590 kb on - strand at 103.648 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.663 kb on - strand, within MMJJ_RS00555 at 103.664 kb on + strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.667 kb on - strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.668 kb on + strand, within MMJJ_RS00555 at 103.670 kb on + strand, within MMJJ_RS00555 at 103.690 kb on - strand, within MMJJ_RS00555 at 103.715 kb on + strand, within MMJJ_RS00555 at 103.715 kb on + strand, within MMJJ_RS00555 at 103.762 kb on + strand, within MMJJ_RS00555 at 103.777 kb on - strand, within MMJJ_RS00555 at 103.793 kb on - strand, within MMJJ_RS00555 at 103.794 kb on + strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.813 kb on - strand, within MMJJ_RS00555 at 103.886 kb on - strand at 103.895 kb on - strand at 103.896 kb on + strand at 103.896 kb on + strand at 103.899 kb on - strand at 103.900 kb on + strand at 103.902 kb on - strand at 103.903 kb on + strand at 103.907 kb on - strand at 103.908 kb on + strand at 103.911 kb on - strand at 103.912 kb on + strand at 103.912 kb on + strand at 103.934 kb on - strand at 103.934 kb on - strand at 103.935 kb on + strand at 103.938 kb on + strand at 103.938 kb on + strand at 103.938 kb on + strand at 103.944 kb on - strand at 103.945 kb on + strand at 103.970 kb on - strand at 103.982 kb on + strand at 104.101 kb on - strand at 104.273 kb on - strand, within MMJJ_RS00560 at 104.274 kb on + strand, within MMJJ_RS00560 at 104.334 kb on - strand, within MMJJ_RS00560 at 104.363 kb on + strand, within MMJJ_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 101,545 + +1.3 101,611 + MMJJ_RS00545 0.11 +2.1 101,627 + MMJJ_RS00545 0.12 -2.8 101,634 - MMJJ_RS00545 0.13 -1.4 101,662 - MMJJ_RS00545 0.16 -1.2 101,663 + MMJJ_RS00545 0.16 -3.5 101,673 + MMJJ_RS00545 0.17 -2.5 101,702 + MMJJ_RS00545 0.20 -0.5 101,773 + MMJJ_RS00545 0.28 -2.1 101,822 - MMJJ_RS00545 0.33 +2.9 101,854 - MMJJ_RS00545 0.36 +2.0 101,855 + MMJJ_RS00545 0.36 -1.1 101,881 - MMJJ_RS00545 0.39 +3.3 101,932 - MMJJ_RS00545 0.44 -1.9 102,046 - MMJJ_RS00545 0.56 -0.4 102,048 - MMJJ_RS00545 0.56 -0.3 102,112 + MMJJ_RS00545 0.63 -1.4 102,151 - MMJJ_RS00545 0.67 +3.8 102,152 + MMJJ_RS00545 0.67 -1.3 102,157 + MMJJ_RS00545 0.67 -2.4 102,179 + MMJJ_RS00545 0.70 +1.0 102,211 - MMJJ_RS00545 0.73 +1.0 102,211 - MMJJ_RS00545 0.73 -3.4 102,232 - MMJJ_RS00545 0.75 +1.8 102,233 + MMJJ_RS00545 0.75 +0.8 102,233 + MMJJ_RS00545 0.75 -4.3 102,233 + MMJJ_RS00545 0.75 +1.8 102,233 + MMJJ_RS00545 0.75 -2.8 102,235 - MMJJ_RS00545 0.75 -2.6 102,235 - MMJJ_RS00545 0.75 +1.4 102,236 + MMJJ_RS00545 0.75 -1.9 102,283 + MMJJ_RS00545 0.80 -2.6 102,295 + MMJJ_RS00545 0.82 -0.5 102,297 - MMJJ_RS00545 0.82 -2.1 102,297 - MMJJ_RS00545 0.82 -1.5 102,297 - MMJJ_RS00545 0.82 +3.0 102,309 + MMJJ_RS00545 0.83 +1.9 102,315 - MMJJ_RS00545 0.84 +2.7 102,315 - MMJJ_RS00545 0.84 +2.1 102,316 + MMJJ_RS00545 0.84 -0.1 102,326 - MMJJ_RS00545 0.85 -1.7 102,327 + MMJJ_RS00545 0.85 -0.9 102,336 - MMJJ_RS00545 0.86 +3.2 102,337 + MMJJ_RS00545 0.86 +3.1 102,337 + MMJJ_RS00545 0.86 -2.9 102,342 + MMJJ_RS00545 0.86 -2.0 102,342 + MMJJ_RS00545 0.86 -0.5 102,342 + MMJJ_RS00545 0.86 +0.2 102,344 + MMJJ_RS00545 0.87 -1.3 102,368 - MMJJ_RS00545 0.89 +1.6 102,380 - +1.7 102,412 - -2.2 102,441 - -0.1 102,441 - +0.7 102,442 + -2.5 102,442 + +1.5 102,442 + +0.5 102,442 + -0.2 102,466 + +2.2 102,466 + +2.5 102,466 + -3.6 102,485 - -1.2 102,490 + +1.6 102,525 + +1.3 102,527 - +0.1 102,528 + -1.7 102,548 + +3.6 102,553 - -1.3 102,554 + -0.3 102,593 - MMJJ_RS00550 0.11 -2.6 102,594 + MMJJ_RS00550 0.11 -3.6 102,612 + MMJJ_RS00550 0.13 -1.3 102,622 - MMJJ_RS00550 0.14 -1.7 102,622 - MMJJ_RS00550 0.14 -2.8 102,622 - MMJJ_RS00550 0.14 -1.4 102,622 - MMJJ_RS00550 0.14 -2.5 102,623 + MMJJ_RS00550 0.14 -0.9 102,646 - MMJJ_RS00550 0.17 -0.5 102,677 - MMJJ_RS00550 0.20 -2.1 102,677 - MMJJ_RS00550 0.20 -2.1 102,681 - MMJJ_RS00550 0.21 -0.9 102,681 - MMJJ_RS00550 0.21 -2.7 102,694 + MMJJ_RS00550 0.22 -1.7 102,694 + MMJJ_RS00550 0.22 -2.9 102,817 - MMJJ_RS00550 0.36 -2.3 102,837 + MMJJ_RS00550 0.38 -0.6 102,884 + MMJJ_RS00550 0.44 -1.7 102,911 - MMJJ_RS00550 0.47 -1.1 102,911 - MMJJ_RS00550 0.47 -2.5 102,912 + MMJJ_RS00550 0.47 -1.7 102,917 - MMJJ_RS00550 0.47 -2.8 102,918 + MMJJ_RS00550 0.47 -0.1 102,965 + MMJJ_RS00550 0.53 -1.5 102,983 - MMJJ_RS00550 0.55 -1.9 102,983 - MMJJ_RS00550 0.55 -3.1 102,984 + MMJJ_RS00550 0.55 -1.5 102,984 + MMJJ_RS00550 0.55 -4.1 102,984 + MMJJ_RS00550 0.55 -3.3 102,984 + MMJJ_RS00550 0.55 -2.3 103,031 - MMJJ_RS00550 0.60 -2.4 103,032 + MMJJ_RS00550 0.60 -1.9 103,046 + MMJJ_RS00550 0.62 -1.7 103,076 - MMJJ_RS00550 0.65 -0.5 103,077 + MMJJ_RS00550 0.65 +1.1 103,128 - MMJJ_RS00550 0.71 -2.5 103,128 - MMJJ_RS00550 0.71 -1.3 103,165 - MMJJ_RS00550 0.75 -1.3 103,165 - MMJJ_RS00550 0.75 -2.7 103,165 - MMJJ_RS00550 0.75 +3.8 103,166 + MMJJ_RS00550 0.76 -2.4 103,166 + MMJJ_RS00550 0.76 -1.9 103,194 + MMJJ_RS00550 0.79 -1.3 103,244 - MMJJ_RS00550 0.84 -0.9 103,245 + MMJJ_RS00550 0.84 +0.9 103,318 - -0.8 103,339 - -1.3 103,339 - -2.1 103,339 - +0.1 103,339 - -1.9 103,339 - -1.7 103,340 + -2.6 103,340 + -0.9 103,340 + -1.4 103,340 + -3.1 103,346 - -1.9 103,346 - -0.5 103,347 + -1.2 103,354 + -2.1 103,399 - -3.1 103,400 + +1.3 103,416 + -0.3 103,418 + -0.2 103,422 - -0.5 103,433 + -2.1 103,448 - +1.4 103,452 - +0.8 103,453 + -2.5 103,453 + -3.0 103,454 - -0.8 103,454 - -1.3 103,454 - +1.6 103,455 + -1.3 103,455 + +3.1 103,460 - +1.4 103,460 - +1.0 103,461 + -0.6 103,461 + +4.7 103,461 + +1.2 103,461 + -2.6 103,461 + +2.5 103,461 + -1.9 103,461 + +3.8 103,464 - -0.1 103,464 - +0.9 103,464 - -2.6 103,464 - +1.1 103,464 - +2.3 103,464 - -1.1 103,465 + +0.1 103,465 + -0.7 103,474 + +2.0 103,481 + +0.6 103,486 - -0.3 103,490 - +1.4 103,504 + -1.9 103,506 + -0.4 103,506 + +3.8 103,521 - -0.9 103,523 - -0.1 103,524 + +1.2 103,535 + -2.7 103,554 - -3.5 103,560 - -0.3 103,590 - -3.1 103,648 - MMJJ_RS00555 0.27 -1.9 103,663 - MMJJ_RS00555 0.31 +2.5 103,663 - MMJJ_RS00555 0.31 -1.2 103,663 - MMJJ_RS00555 0.31 +1.1 103,664 + MMJJ_RS00555 0.32 +3.6 103,667 - MMJJ_RS00555 0.32 -1.2 103,667 - MMJJ_RS00555 0.32 +3.4 103,667 - MMJJ_RS00555 0.32 -1.1 103,667 - MMJJ_RS00555 0.32 +1.9 103,667 - MMJJ_RS00555 0.32 -0.5 103,668 + MMJJ_RS00555 0.33 -1.2 103,668 + MMJJ_RS00555 0.33 -1.7 103,668 + MMJJ_RS00555 0.33 -1.5 103,668 + MMJJ_RS00555 0.33 -1.7 103,668 + MMJJ_RS00555 0.33 +0.3 103,668 + MMJJ_RS00555 0.33 +1.1 103,670 + MMJJ_RS00555 0.33 -0.9 103,690 - MMJJ_RS00555 0.39 -2.6 103,715 + MMJJ_RS00555 0.46 -2.6 103,715 + MMJJ_RS00555 0.46 -1.5 103,762 + MMJJ_RS00555 0.60 -2.0 103,777 - MMJJ_RS00555 0.65 -1.5 103,793 - MMJJ_RS00555 0.69 -0.5 103,794 + MMJJ_RS00555 0.70 +4.0 103,813 - MMJJ_RS00555 0.75 +1.5 103,813 - MMJJ_RS00555 0.75 +1.2 103,813 - MMJJ_RS00555 0.75 -1.7 103,886 - +0.1 103,895 - -0.9 103,896 + -3.5 103,896 + +3.8 103,899 - -2.8 103,900 + -1.1 103,902 - +1.9 103,903 + -0.7 103,907 - +0.1 103,908 + +1.2 103,911 - +2.3 103,912 + -2.5 103,912 + +0.4 103,934 - -1.9 103,934 - -1.7 103,935 + -0.1 103,938 + -1.0 103,938 + +2.1 103,938 + -2.5 103,944 - -2.7 103,945 + +3.6 103,970 - +1.1 103,982 + -2.5 104,101 - -0.5 104,273 - MMJJ_RS00560 0.25 +1.1 104,274 + MMJJ_RS00560 0.25 -1.5 104,334 - MMJJ_RS00560 0.31 +0.8 104,363 + MMJJ_RS00560 0.33 -0.9
Or see this region's nucleotide sequence