Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00535 and MMJJ_RS00540 are separated by 94 nucleotides MMJJ_RS00540 and MMJJ_RS00545 are separated by 33 nucleotides
MMJJ_RS00535: MMJJ_RS00535 - tetratricopeptide repeat protein, at 99,700 to 100,881
_RS00535
MMJJ_RS00540: MMJJ_RS00540 - hypothetical protein, at 100,976 to 101,473
_RS00540
MMJJ_RS00545: MMJJ_RS00545 - hypothetical protein, at 101,507 to 102,472
_RS00545
Position (kb) 100
101
102 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 99.984 kb on + strand, within MMJJ_RS00535 at 100.064 kb on - strand, within MMJJ_RS00535 at 100.065 kb on + strand, within MMJJ_RS00535 at 100.065 kb on + strand, within MMJJ_RS00535 at 100.095 kb on + strand, within MMJJ_RS00535 at 100.099 kb on - strand, within MMJJ_RS00535 at 100.099 kb on - strand, within MMJJ_RS00535 at 100.099 kb on - strand, within MMJJ_RS00535 at 100.100 kb on + strand, within MMJJ_RS00535 at 100.100 kb on + strand, within MMJJ_RS00535 at 100.100 kb on + strand, within MMJJ_RS00535 at 100.100 kb on + strand, within MMJJ_RS00535 at 100.102 kb on + strand, within MMJJ_RS00535 at 100.129 kb on - strand, within MMJJ_RS00535 at 100.130 kb on + strand, within MMJJ_RS00535 at 100.131 kb on - strand, within MMJJ_RS00535 at 100.166 kb on - strand, within MMJJ_RS00535 at 100.228 kb on - strand, within MMJJ_RS00535 at 100.234 kb on + strand, within MMJJ_RS00535 at 100.252 kb on + strand, within MMJJ_RS00535 at 100.253 kb on - strand, within MMJJ_RS00535 at 100.253 kb on - strand, within MMJJ_RS00535 at 100.254 kb on + strand, within MMJJ_RS00535 at 100.258 kb on + strand, within MMJJ_RS00535 at 100.268 kb on + strand, within MMJJ_RS00535 at 100.269 kb on - strand, within MMJJ_RS00535 at 100.270 kb on + strand, within MMJJ_RS00535 at 100.276 kb on + strand, within MMJJ_RS00535 at 100.304 kb on + strand, within MMJJ_RS00535 at 100.304 kb on + strand, within MMJJ_RS00535 at 100.308 kb on - strand, within MMJJ_RS00535 at 100.308 kb on - strand, within MMJJ_RS00535 at 100.309 kb on + strand, within MMJJ_RS00535 at 100.312 kb on - strand, within MMJJ_RS00535 at 100.312 kb on - strand, within MMJJ_RS00535 at 100.312 kb on - strand, within MMJJ_RS00535 at 100.313 kb on + strand, within MMJJ_RS00535 at 100.313 kb on + strand, within MMJJ_RS00535 at 100.316 kb on - strand, within MMJJ_RS00535 at 100.316 kb on - strand, within MMJJ_RS00535 at 100.403 kb on - strand, within MMJJ_RS00535 at 100.403 kb on - strand, within MMJJ_RS00535 at 100.403 kb on - strand, within MMJJ_RS00535 at 100.403 kb on - strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.404 kb on + strand, within MMJJ_RS00535 at 100.407 kb on - strand, within MMJJ_RS00535 at 100.408 kb on + strand, within MMJJ_RS00535 at 100.430 kb on - strand, within MMJJ_RS00535 at 100.430 kb on - strand, within MMJJ_RS00535 at 100.466 kb on - strand, within MMJJ_RS00535 at 100.469 kb on + strand, within MMJJ_RS00535 at 100.469 kb on + strand, within MMJJ_RS00535 at 100.469 kb on + strand, within MMJJ_RS00535 at 100.471 kb on - strand, within MMJJ_RS00535 at 100.472 kb on + strand, within MMJJ_RS00535 at 100.476 kb on - strand, within MMJJ_RS00535 at 100.486 kb on - strand, within MMJJ_RS00535 at 100.501 kb on - strand, within MMJJ_RS00535 at 100.501 kb on - strand, within MMJJ_RS00535 at 100.502 kb on + strand, within MMJJ_RS00535 at 100.502 kb on + strand, within MMJJ_RS00535 at 100.502 kb on + strand, within MMJJ_RS00535 at 100.571 kb on + strand, within MMJJ_RS00535 at 100.576 kb on + strand, within MMJJ_RS00535 at 100.593 kb on - strand, within MMJJ_RS00535 at 100.593 kb on - strand, within MMJJ_RS00535 at 100.667 kb on + strand, within MMJJ_RS00535 at 100.693 kb on - strand, within MMJJ_RS00535 at 100.704 kb on + strand, within MMJJ_RS00535 at 100.772 kb on - strand at 100.773 kb on + strand at 100.773 kb on + strand at 100.799 kb on + strand at 100.813 kb on - strand at 100.813 kb on - strand at 100.814 kb on + strand at 100.827 kb on + strand at 100.827 kb on + strand at 100.843 kb on + strand at 100.843 kb on + strand at 100.845 kb on - strand at 100.846 kb on + strand at 100.846 kb on + strand at 100.846 kb on + strand at 100.874 kb on - strand at 100.875 kb on + strand at 100.884 kb on - strand at 100.884 kb on - strand at 100.884 kb on - strand at 100.885 kb on + strand at 100.885 kb on + strand at 100.888 kb on + strand at 100.888 kb on + strand at 100.916 kb on + strand at 100.924 kb on - strand at 100.925 kb on + strand at 100.930 kb on + strand at 100.994 kb on - strand at 100.994 kb on - strand at 100.994 kb on - strand at 100.994 kb on - strand at 100.994 kb on - strand at 100.995 kb on + strand at 100.995 kb on + strand at 101.026 kb on + strand, within MMJJ_RS00540 at 101.037 kb on - strand, within MMJJ_RS00540 at 101.080 kb on + strand, within MMJJ_RS00540 at 101.092 kb on - strand, within MMJJ_RS00540 at 101.092 kb on - strand, within MMJJ_RS00540 at 101.187 kb on - strand, within MMJJ_RS00540 at 101.204 kb on - strand, within MMJJ_RS00540 at 101.268 kb on - strand, within MMJJ_RS00540 at 101.269 kb on + strand, within MMJJ_RS00540 at 101.269 kb on + strand, within MMJJ_RS00540 at 101.269 kb on + strand, within MMJJ_RS00540 at 101.300 kb on - strand, within MMJJ_RS00540 at 101.358 kb on - strand, within MMJJ_RS00540 at 101.364 kb on - strand, within MMJJ_RS00540 at 101.364 kb on - strand, within MMJJ_RS00540 at 101.377 kb on - strand, within MMJJ_RS00540 at 101.438 kb on - strand at 101.481 kb on + strand at 101.496 kb on - strand at 101.545 kb on + strand at 101.611 kb on + strand, within MMJJ_RS00545 at 101.627 kb on + strand, within MMJJ_RS00545 at 101.634 kb on - strand, within MMJJ_RS00545 at 101.662 kb on - strand, within MMJJ_RS00545 at 101.663 kb on + strand, within MMJJ_RS00545 at 101.673 kb on + strand, within MMJJ_RS00545 at 101.702 kb on + strand, within MMJJ_RS00545 at 101.773 kb on + strand, within MMJJ_RS00545 at 101.822 kb on - strand, within MMJJ_RS00545 at 101.854 kb on - strand, within MMJJ_RS00545 at 101.855 kb on + strand, within MMJJ_RS00545 at 101.881 kb on - strand, within MMJJ_RS00545 at 101.932 kb on - strand, within MMJJ_RS00545 at 102.046 kb on - strand, within MMJJ_RS00545 at 102.048 kb on - strand, within MMJJ_RS00545 at 102.112 kb on + strand, within MMJJ_RS00545 at 102.151 kb on - strand, within MMJJ_RS00545 at 102.152 kb on + strand, within MMJJ_RS00545 at 102.157 kb on + strand, within MMJJ_RS00545 at 102.179 kb on + strand, within MMJJ_RS00545 at 102.211 kb on - strand, within MMJJ_RS00545 at 102.211 kb on - strand, within MMJJ_RS00545 at 102.232 kb on - strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.233 kb on + strand, within MMJJ_RS00545 at 102.235 kb on - strand, within MMJJ_RS00545 at 102.235 kb on - strand, within MMJJ_RS00545 at 102.236 kb on + strand, within MMJJ_RS00545 at 102.283 kb on + strand, within MMJJ_RS00545 at 102.295 kb on + strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.297 kb on - strand, within MMJJ_RS00545 at 102.309 kb on + strand, within MMJJ_RS00545 at 102.315 kb on - strand, within MMJJ_RS00545 at 102.315 kb on - strand, within MMJJ_RS00545 at 102.316 kb on + strand, within MMJJ_RS00545 at 102.326 kb on - strand, within MMJJ_RS00545 at 102.327 kb on + strand, within MMJJ_RS00545 at 102.336 kb on - strand, within MMJJ_RS00545 at 102.337 kb on + strand, within MMJJ_RS00545 at 102.337 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.342 kb on + strand, within MMJJ_RS00545 at 102.344 kb on + strand, within MMJJ_RS00545 at 102.368 kb on - strand, within MMJJ_RS00545 at 102.380 kb on - strand at 102.412 kb on - strand at 102.441 kb on - strand at 102.441 kb on - strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.442 kb on + strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 99,984 + MMJJ_RS00535 0.24 +0.9 100,064 - MMJJ_RS00535 0.31 -2.0 100,065 + MMJJ_RS00535 0.31 +3.1 100,065 + MMJJ_RS00535 0.31 +0.9 100,095 + MMJJ_RS00535 0.33 -3.3 100,099 - MMJJ_RS00535 0.34 +0.8 100,099 - MMJJ_RS00535 0.34 +0.1 100,099 - MMJJ_RS00535 0.34 +1.3 100,100 + MMJJ_RS00535 0.34 +1.6 100,100 + MMJJ_RS00535 0.34 -0.6 100,100 + MMJJ_RS00535 0.34 -1.1 100,100 + MMJJ_RS00535 0.34 +0.9 100,102 + MMJJ_RS00535 0.34 +0.5 100,129 - MMJJ_RS00535 0.36 +1.8 100,130 + MMJJ_RS00535 0.36 +3.1 100,131 - MMJJ_RS00535 0.36 -1.7 100,166 - MMJJ_RS00535 0.39 -3.0 100,228 - MMJJ_RS00535 0.45 -1.9 100,234 + MMJJ_RS00535 0.45 +0.3 100,252 + MMJJ_RS00535 0.47 +0.1 100,253 - MMJJ_RS00535 0.47 -0.8 100,253 - MMJJ_RS00535 0.47 +1.1 100,254 + MMJJ_RS00535 0.47 -2.1 100,258 + MMJJ_RS00535 0.47 -1.5 100,268 + MMJJ_RS00535 0.48 -2.0 100,269 - MMJJ_RS00535 0.48 +0.9 100,270 + MMJJ_RS00535 0.48 +0.5 100,276 + MMJJ_RS00535 0.49 +2.1 100,304 + MMJJ_RS00535 0.51 -1.4 100,304 + MMJJ_RS00535 0.51 -3.0 100,308 - MMJJ_RS00535 0.51 +2.3 100,308 - MMJJ_RS00535 0.51 -3.5 100,309 + MMJJ_RS00535 0.52 +4.0 100,312 - MMJJ_RS00535 0.52 -3.4 100,312 - MMJJ_RS00535 0.52 +0.6 100,312 - MMJJ_RS00535 0.52 -1.5 100,313 + MMJJ_RS00535 0.52 -1.7 100,313 + MMJJ_RS00535 0.52 +3.6 100,316 - MMJJ_RS00535 0.52 -1.6 100,316 - MMJJ_RS00535 0.52 -1.8 100,403 - MMJJ_RS00535 0.59 +0.7 100,403 - MMJJ_RS00535 0.59 -0.5 100,403 - MMJJ_RS00535 0.59 -0.3 100,403 - MMJJ_RS00535 0.59 +3.0 100,404 + MMJJ_RS00535 0.60 -1.3 100,404 + MMJJ_RS00535 0.60 -1.7 100,404 + MMJJ_RS00535 0.60 +0.9 100,404 + MMJJ_RS00535 0.60 +0.4 100,404 + MMJJ_RS00535 0.60 +0.6 100,404 + MMJJ_RS00535 0.60 +2.2 100,404 + MMJJ_RS00535 0.60 +0.1 100,404 + MMJJ_RS00535 0.60 +0.8 100,404 + MMJJ_RS00535 0.60 +1.9 100,404 + MMJJ_RS00535 0.60 -2.9 100,404 + MMJJ_RS00535 0.60 +3.5 100,404 + MMJJ_RS00535 0.60 -3.4 100,407 - MMJJ_RS00535 0.60 -0.5 100,408 + MMJJ_RS00535 0.60 +1.7 100,430 - MMJJ_RS00535 0.62 +1.2 100,430 - MMJJ_RS00535 0.62 +2.5 100,466 - MMJJ_RS00535 0.65 +2.7 100,469 + MMJJ_RS00535 0.65 -2.3 100,469 + MMJJ_RS00535 0.65 +1.9 100,469 + MMJJ_RS00535 0.65 +1.2 100,471 - MMJJ_RS00535 0.65 -2.8 100,472 + MMJJ_RS00535 0.65 +1.4 100,476 - MMJJ_RS00535 0.66 -1.6 100,486 - MMJJ_RS00535 0.66 -3.0 100,501 - MMJJ_RS00535 0.68 -1.2 100,501 - MMJJ_RS00535 0.68 +0.8 100,502 + MMJJ_RS00535 0.68 -1.9 100,502 + MMJJ_RS00535 0.68 -2.5 100,502 + MMJJ_RS00535 0.68 +0.8 100,571 + MMJJ_RS00535 0.74 -1.8 100,576 + MMJJ_RS00535 0.74 -2.9 100,593 - MMJJ_RS00535 0.76 -0.9 100,593 - MMJJ_RS00535 0.76 +2.5 100,667 + MMJJ_RS00535 0.82 +2.9 100,693 - MMJJ_RS00535 0.84 +1.6 100,704 + MMJJ_RS00535 0.85 -2.2 100,772 - +0.2 100,773 + -1.4 100,773 + +0.7 100,799 + +1.0 100,813 - -0.9 100,813 - +0.1 100,814 + -3.1 100,827 + +1.3 100,827 + -0.2 100,843 + +1.9 100,843 + -0.7 100,845 - +1.1 100,846 + -2.8 100,846 + +0.6 100,846 + +0.1 100,874 - +0.7 100,875 + +0.1 100,884 - -1.7 100,884 - -1.9 100,884 - +1.8 100,885 + -1.8 100,885 + +0.3 100,888 + -1.9 100,888 + +0.4 100,916 + -1.4 100,924 - +3.1 100,925 + +2.1 100,930 + +1.1 100,994 - -0.3 100,994 - -1.8 100,994 - -1.8 100,994 - -1.3 100,994 - +2.1 100,995 + -1.3 100,995 + -1.2 101,026 + MMJJ_RS00540 0.10 +0.9 101,037 - MMJJ_RS00540 0.12 +2.1 101,080 + MMJJ_RS00540 0.21 +5.1 101,092 - MMJJ_RS00540 0.23 +4.0 101,092 - MMJJ_RS00540 0.23 -1.7 101,187 - MMJJ_RS00540 0.42 -0.3 101,204 - MMJJ_RS00540 0.46 -0.4 101,268 - MMJJ_RS00540 0.59 +2.8 101,269 + MMJJ_RS00540 0.59 -2.3 101,269 + MMJJ_RS00540 0.59 +0.9 101,269 + MMJJ_RS00540 0.59 -0.4 101,300 - MMJJ_RS00540 0.65 -0.4 101,358 - MMJJ_RS00540 0.77 +1.1 101,364 - MMJJ_RS00540 0.78 +2.1 101,364 - MMJJ_RS00540 0.78 +2.0 101,377 - MMJJ_RS00540 0.81 +3.1 101,438 - +1.5 101,481 + -0.1 101,496 - +1.7 101,545 + +1.3 101,611 + MMJJ_RS00545 0.11 +2.1 101,627 + MMJJ_RS00545 0.12 -2.8 101,634 - MMJJ_RS00545 0.13 -1.4 101,662 - MMJJ_RS00545 0.16 -1.2 101,663 + MMJJ_RS00545 0.16 -3.5 101,673 + MMJJ_RS00545 0.17 -2.5 101,702 + MMJJ_RS00545 0.20 -0.5 101,773 + MMJJ_RS00545 0.28 -2.1 101,822 - MMJJ_RS00545 0.33 +2.9 101,854 - MMJJ_RS00545 0.36 +2.0 101,855 + MMJJ_RS00545 0.36 -1.1 101,881 - MMJJ_RS00545 0.39 +3.3 101,932 - MMJJ_RS00545 0.44 -1.9 102,046 - MMJJ_RS00545 0.56 -0.4 102,048 - MMJJ_RS00545 0.56 -0.3 102,112 + MMJJ_RS00545 0.63 -1.4 102,151 - MMJJ_RS00545 0.67 +3.8 102,152 + MMJJ_RS00545 0.67 -1.3 102,157 + MMJJ_RS00545 0.67 -2.4 102,179 + MMJJ_RS00545 0.70 +1.0 102,211 - MMJJ_RS00545 0.73 +1.0 102,211 - MMJJ_RS00545 0.73 -3.4 102,232 - MMJJ_RS00545 0.75 +1.8 102,233 + MMJJ_RS00545 0.75 +0.8 102,233 + MMJJ_RS00545 0.75 -4.3 102,233 + MMJJ_RS00545 0.75 +1.8 102,233 + MMJJ_RS00545 0.75 -2.8 102,235 - MMJJ_RS00545 0.75 -2.6 102,235 - MMJJ_RS00545 0.75 +1.4 102,236 + MMJJ_RS00545 0.75 -1.9 102,283 + MMJJ_RS00545 0.80 -2.6 102,295 + MMJJ_RS00545 0.82 -0.5 102,297 - MMJJ_RS00545 0.82 -2.1 102,297 - MMJJ_RS00545 0.82 -1.5 102,297 - MMJJ_RS00545 0.82 +3.0 102,309 + MMJJ_RS00545 0.83 +1.9 102,315 - MMJJ_RS00545 0.84 +2.7 102,315 - MMJJ_RS00545 0.84 +2.1 102,316 + MMJJ_RS00545 0.84 -0.1 102,326 - MMJJ_RS00545 0.85 -1.7 102,327 + MMJJ_RS00545 0.85 -0.9 102,336 - MMJJ_RS00545 0.86 +3.2 102,337 + MMJJ_RS00545 0.86 +3.1 102,337 + MMJJ_RS00545 0.86 -2.9 102,342 + MMJJ_RS00545 0.86 -2.0 102,342 + MMJJ_RS00545 0.86 -0.5 102,342 + MMJJ_RS00545 0.86 +0.2 102,344 + MMJJ_RS00545 0.87 -1.3 102,368 - MMJJ_RS00545 0.89 +1.6 102,380 - +1.7 102,412 - -2.2 102,441 - -0.1 102,441 - +0.7 102,442 + -2.5 102,442 + +1.5 102,442 + +0.5 102,442 + -0.2 102,466 + +2.2 102,466 + +2.5 102,466 + -3.6
Or see this region's nucleotide sequence