Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00515 and MMJJ_RS00520 overlap by 8 nucleotides MMJJ_RS00520 and MMJJ_RS00525 are separated by 120 nucleotides MMJJ_RS00525 and MMJJ_RS00530 are separated by 149 nucleotides
MMJJ_RS00515: MMJJ_RS00515 - cobalt transporter CbiM, at 97,247 to 97,885
_RS00515
MMJJ_RS00520: MMJJ_RS00520 - PDGLE domain-containing protein, at 97,878 to 98,204
_RS00520
MMJJ_RS00525: MMJJ_RS00525 - Dabb family protein, at 98,325 to 98,627
_RS00525
MMJJ_RS00530: MMJJ_RS00530 - cobalt ECF transporter T component CbiQ, at 98,777 to 99,544
_RS00530
Position (kb) 98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 97.329 kb on - strand, within MMJJ_RS00515 at 97.423 kb on - strand, within MMJJ_RS00515 at 97.423 kb on - strand, within MMJJ_RS00515 at 97.425 kb on - strand, within MMJJ_RS00515 at 97.425 kb on - strand, within MMJJ_RS00515 at 97.426 kb on + strand, within MMJJ_RS00515 at 97.438 kb on - strand, within MMJJ_RS00515 at 97.477 kb on + strand, within MMJJ_RS00515 at 97.477 kb on + strand, within MMJJ_RS00515 at 97.501 kb on + strand, within MMJJ_RS00515 at 97.501 kb on + strand, within MMJJ_RS00515 at 97.503 kb on - strand, within MMJJ_RS00515 at 97.503 kb on - strand, within MMJJ_RS00515 at 97.510 kb on + strand, within MMJJ_RS00515 at 97.583 kb on + strand, within MMJJ_RS00515 at 97.597 kb on + strand, within MMJJ_RS00515 at 97.597 kb on + strand, within MMJJ_RS00515 at 97.597 kb on + strand, within MMJJ_RS00515 at 97.608 kb on - strand, within MMJJ_RS00515 at 97.614 kb on + strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.616 kb on - strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.617 kb on + strand, within MMJJ_RS00515 at 97.687 kb on - strand, within MMJJ_RS00515 at 97.689 kb on - strand, within MMJJ_RS00515 at 97.689 kb on - strand, within MMJJ_RS00515 at 97.819 kb on + strand, within MMJJ_RS00515 at 97.851 kb on - strand at 97.852 kb on + strand at 97.860 kb on - strand at 97.884 kb on + strand at 97.901 kb on + strand at 97.901 kb on + strand at 97.901 kb on + strand at 97.901 kb on + strand at 97.913 kb on + strand, within MMJJ_RS00520 at 97.927 kb on - strand, within MMJJ_RS00520 at 97.928 kb on + strand, within MMJJ_RS00520 at 97.952 kb on + strand, within MMJJ_RS00520 at 98.001 kb on + strand, within MMJJ_RS00520 at 98.083 kb on + strand at 98.107 kb on - strand, within MMJJ_RS00520 at 98.125 kb on - strand, within MMJJ_RS00520 at 98.129 kb on - strand, within MMJJ_RS00520 at 98.130 kb on + strand, within MMJJ_RS00520 at 98.143 kb on - strand, within MMJJ_RS00520 at 98.144 kb on + strand, within MMJJ_RS00520 at 98.153 kb on + strand, within MMJJ_RS00520 at 98.153 kb on + strand, within MMJJ_RS00520 at 98.153 kb on + strand, within MMJJ_RS00520 at 98.177 kb on + strand at 98.250 kb on + strand at 98.266 kb on - strand at 98.270 kb on - strand at 98.271 kb on + strand at 98.271 kb on + strand at 98.280 kb on - strand at 98.281 kb on + strand at 98.285 kb on - strand at 98.286 kb on + strand at 98.305 kb on + strand at 98.320 kb on - strand at 98.320 kb on - strand at 98.321 kb on + strand at 98.321 kb on + strand at 98.324 kb on - strand at 98.464 kb on - strand, within MMJJ_RS00525 at 98.498 kb on + strand, within MMJJ_RS00525 at 98.534 kb on + strand, within MMJJ_RS00525 at 98.626 kb on + strand at 98.640 kb on + strand at 98.646 kb on - strand at 98.646 kb on - strand at 98.647 kb on + strand at 98.647 kb on + strand at 98.665 kb on - strand at 98.679 kb on - strand at 98.680 kb on + strand at 98.680 kb on + strand at 98.694 kb on - strand at 98.706 kb on - strand at 98.711 kb on - strand at 98.717 kb on + strand at 98.722 kb on - strand at 98.722 kb on - strand at 98.722 kb on - strand at 98.723 kb on + strand at 98.727 kb on - strand at 98.727 kb on - strand at 98.728 kb on + strand at 98.728 kb on + strand at 98.744 kb on - strand at 98.750 kb on + strand at 98.750 kb on + strand at 98.752 kb on - strand at 98.838 kb on - strand at 98.839 kb on + strand at 98.839 kb on + strand at 98.839 kb on + strand at 98.845 kb on - strand at 98.910 kb on - strand, within MMJJ_RS00530 at 98.910 kb on - strand, within MMJJ_RS00530 at 98.930 kb on - strand, within MMJJ_RS00530 at 99.054 kb on - strand, within MMJJ_RS00530 at 99.057 kb on - strand, within MMJJ_RS00530 at 99.058 kb on + strand, within MMJJ_RS00530 at 99.058 kb on + strand, within MMJJ_RS00530 at 99.083 kb on - strand, within MMJJ_RS00530 at 99.083 kb on - strand, within MMJJ_RS00530 at 99.084 kb on + strand, within MMJJ_RS00530 at 99.084 kb on + strand, within MMJJ_RS00530 at 99.084 kb on + strand, within MMJJ_RS00530 at 99.177 kb on + strand, within MMJJ_RS00530 at 99.177 kb on + strand, within MMJJ_RS00530 at 99.186 kb on - strand, within MMJJ_RS00530 at 99.187 kb on + strand, within MMJJ_RS00530 at 99.187 kb on + strand, within MMJJ_RS00530 at 99.187 kb on + strand, within MMJJ_RS00530 at 99.220 kb on - strand, within MMJJ_RS00530 at 99.221 kb on + strand, within MMJJ_RS00530 at 99.221 kb on + strand, within MMJJ_RS00530 at 99.226 kb on - strand, within MMJJ_RS00530 at 99.247 kb on - strand, within MMJJ_RS00530 at 99.248 kb on + strand, within MMJJ_RS00530 at 99.248 kb on + strand, within MMJJ_RS00530 at 99.248 kb on + strand, within MMJJ_RS00530 at 99.252 kb on + strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.255 kb on - strand, within MMJJ_RS00530 at 99.256 kb on + strand, within MMJJ_RS00530 at 99.277 kb on + strand, within MMJJ_RS00530 at 99.313 kb on - strand, within MMJJ_RS00530 at 99.345 kb on - strand, within MMJJ_RS00530 at 99.350 kb on + strand, within MMJJ_RS00530 at 99.410 kb on - strand, within MMJJ_RS00530 at 99.411 kb on + strand, within MMJJ_RS00530 at 99.414 kb on - strand, within MMJJ_RS00530 at 99.482 kb on + strand at 99.505 kb on - strand at 99.505 kb on - strand at 99.514 kb on + strand at 99.516 kb on - strand at 99.577 kb on - strand at 99.577 kb on - strand at 99.578 kb on + strand at 99.578 kb on + strand at 99.584 kb on - strand at 99.584 kb on - strand at 99.587 kb on - strand at 99.587 kb on - strand at 99.587 kb on - strand at 99.587 kb on - strand at 99.588 kb on + strand at 99.588 kb on + strand at 99.588 kb on + strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.590 kb on - strand at 99.591 kb on + strand at 99.591 kb on + strand at 99.591 kb on + strand at 99.591 kb on + strand at 99.591 kb on + strand at 99.592 kb on - strand at 99.592 kb on - strand at 99.592 kb on - strand at 99.592 kb on - strand at 99.593 kb on + strand at 99.596 kb on - strand at 99.597 kb on + strand at 99.603 kb on + strand at 99.603 kb on + strand at 99.603 kb on + strand at 99.605 kb on + strand at 99.605 kb on + strand at 99.606 kb on - strand at 99.606 kb on - strand at 99.606 kb on - strand at 99.606 kb on - strand at 99.606 kb on - strand at 99.607 kb on + strand at 99.607 kb on + strand at 99.607 kb on + strand at 99.607 kb on + strand at 99.607 kb on + strand at 99.607 kb on + strand at 99.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 97,329 - MMJJ_RS00515 0.13 +2.2 97,423 - MMJJ_RS00515 0.28 -0.5 97,423 - MMJJ_RS00515 0.28 +0.4 97,425 - MMJJ_RS00515 0.28 +2.8 97,425 - MMJJ_RS00515 0.28 -2.3 97,426 + MMJJ_RS00515 0.28 -2.4 97,438 - MMJJ_RS00515 0.30 -0.5 97,477 + MMJJ_RS00515 0.36 -2.1 97,477 + MMJJ_RS00515 0.36 -3.3 97,501 + MMJJ_RS00515 0.40 -0.7 97,501 + MMJJ_RS00515 0.40 -0.1 97,503 - MMJJ_RS00515 0.40 -2.1 97,503 - MMJJ_RS00515 0.40 +1.4 97,510 + MMJJ_RS00515 0.41 +0.0 97,583 + MMJJ_RS00515 0.53 +2.4 97,597 + MMJJ_RS00515 0.55 -2.7 97,597 + MMJJ_RS00515 0.55 +1.9 97,597 + MMJJ_RS00515 0.55 +1.0 97,608 - MMJJ_RS00515 0.56 -0.5 97,614 + MMJJ_RS00515 0.57 -2.6 97,616 - MMJJ_RS00515 0.58 -1.5 97,616 - MMJJ_RS00515 0.58 -1.9 97,616 - MMJJ_RS00515 0.58 +2.6 97,616 - MMJJ_RS00515 0.58 +1.2 97,616 - MMJJ_RS00515 0.58 -0.2 97,616 - MMJJ_RS00515 0.58 -1.6 97,616 - MMJJ_RS00515 0.58 -0.9 97,617 + MMJJ_RS00515 0.58 -0.9 97,617 + MMJJ_RS00515 0.58 +1.5 97,617 + MMJJ_RS00515 0.58 -2.6 97,617 + MMJJ_RS00515 0.58 +1.5 97,617 + MMJJ_RS00515 0.58 -1.5 97,617 + MMJJ_RS00515 0.58 -1.3 97,617 + MMJJ_RS00515 0.58 -2.5 97,687 - MMJJ_RS00515 0.69 -1.8 97,689 - MMJJ_RS00515 0.69 -1.7 97,689 - MMJJ_RS00515 0.69 -1.5 97,819 + MMJJ_RS00515 0.90 +0.2 97,851 - -1.1 97,852 + +2.1 97,860 - +2.9 97,884 + -2.3 97,901 + +4.7 97,901 + +2.7 97,901 + +1.6 97,901 + +2.9 97,913 + MMJJ_RS00520 0.11 +1.0 97,927 - MMJJ_RS00520 0.15 +1.7 97,928 + MMJJ_RS00520 0.15 +1.6 97,952 + MMJJ_RS00520 0.23 +1.3 98,001 + MMJJ_RS00520 0.38 -2.3 98,083 + +1.1 98,107 - MMJJ_RS00520 0.70 -1.9 98,125 - MMJJ_RS00520 0.76 -1.5 98,129 - MMJJ_RS00520 0.77 +1.1 98,130 + MMJJ_RS00520 0.77 +0.6 98,143 - MMJJ_RS00520 0.81 -1.7 98,144 + MMJJ_RS00520 0.81 +0.0 98,153 + MMJJ_RS00520 0.84 -3.3 98,153 + MMJJ_RS00520 0.84 +2.7 98,153 + MMJJ_RS00520 0.84 +2.6 98,177 + +1.7 98,250 + +1.2 98,266 - +2.0 98,270 - +2.4 98,271 + +0.4 98,271 + +1.0 98,280 - -0.1 98,281 + -4.2 98,285 - +4.8 98,286 + +0.2 98,305 + -1.3 98,320 - -0.9 98,320 - +0.9 98,321 + +1.3 98,321 + +2.4 98,324 - -0.5 98,464 - MMJJ_RS00525 0.46 -1.5 98,498 + MMJJ_RS00525 0.57 -1.5 98,534 + MMJJ_RS00525 0.69 -1.1 98,626 + -0.5 98,640 + +5.2 98,646 - -2.6 98,646 - -0.1 98,647 + +2.4 98,647 + +1.7 98,665 - +2.0 98,679 - -3.4 98,680 + -2.5 98,680 + -0.3 98,694 - +1.2 98,706 - +0.1 98,711 - -1.5 98,717 + +0.2 98,722 - +0.8 98,722 - -2.7 98,722 - +1.1 98,723 + +1.7 98,727 - +5.4 98,727 - -0.8 98,728 + +2.2 98,728 + +2.4 98,744 - +0.6 98,750 + +2.4 98,750 + +1.7 98,752 - -0.6 98,838 - -2.6 98,839 + -1.2 98,839 + +0.5 98,839 + -1.6 98,845 - +1.8 98,910 - MMJJ_RS00530 0.17 -2.0 98,910 - MMJJ_RS00530 0.17 +2.1 98,930 - MMJJ_RS00530 0.20 +0.7 99,054 - MMJJ_RS00530 0.36 +3.0 99,057 - MMJJ_RS00530 0.36 +1.7 99,058 + MMJJ_RS00530 0.37 -2.4 99,058 + MMJJ_RS00530 0.37 +2.8 99,083 - MMJJ_RS00530 0.40 -2.4 99,083 - MMJJ_RS00530 0.40 +2.2 99,084 + MMJJ_RS00530 0.40 -0.1 99,084 + MMJJ_RS00530 0.40 +0.1 99,084 + MMJJ_RS00530 0.40 -0.0 99,177 + MMJJ_RS00530 0.52 -2.3 99,177 + MMJJ_RS00530 0.52 +2.9 99,186 - MMJJ_RS00530 0.53 -1.9 99,187 + MMJJ_RS00530 0.53 -1.6 99,187 + MMJJ_RS00530 0.53 +2.4 99,187 + MMJJ_RS00530 0.53 +3.9 99,220 - MMJJ_RS00530 0.58 +1.7 99,221 + MMJJ_RS00530 0.58 +1.9 99,221 + MMJJ_RS00530 0.58 -2.2 99,226 - MMJJ_RS00530 0.58 +2.8 99,247 - MMJJ_RS00530 0.61 -2.9 99,248 + MMJJ_RS00530 0.61 -0.5 99,248 + MMJJ_RS00530 0.61 +1.3 99,248 + MMJJ_RS00530 0.61 -1.6 99,252 + MMJJ_RS00530 0.62 +2.2 99,255 - MMJJ_RS00530 0.62 -0.5 99,255 - MMJJ_RS00530 0.62 -0.9 99,255 - MMJJ_RS00530 0.62 +0.5 99,255 - MMJJ_RS00530 0.62 +0.1 99,255 - MMJJ_RS00530 0.62 +3.0 99,255 - MMJJ_RS00530 0.62 +3.4 99,255 - MMJJ_RS00530 0.62 +2.3 99,255 - MMJJ_RS00530 0.62 +3.3 99,256 + MMJJ_RS00530 0.62 -3.3 99,277 + MMJJ_RS00530 0.65 +1.1 99,313 - MMJJ_RS00530 0.70 -3.3 99,345 - MMJJ_RS00530 0.74 +1.2 99,350 + MMJJ_RS00530 0.75 +1.2 99,410 - MMJJ_RS00530 0.82 +2.2 99,411 + MMJJ_RS00530 0.83 -0.8 99,414 - MMJJ_RS00530 0.83 +1.5 99,482 + -1.7 99,505 - +2.2 99,505 - -3.5 99,514 + -1.2 99,516 - +0.3 99,577 - -0.4 99,577 - +2.7 99,578 + +1.5 99,578 + +2.7 99,584 - -0.9 99,584 - -0.1 99,587 - -0.5 99,587 - -0.4 99,587 - +1.5 99,587 - -1.0 99,588 + -4.2 99,588 + -0.6 99,588 + +1.8 99,590 - -2.8 99,590 - +2.9 99,590 - +1.1 99,590 - -2.2 99,590 - -0.9 99,590 - -0.7 99,590 - -0.9 99,591 + +3.3 99,591 + +1.6 99,591 + -0.2 99,591 + -2.5 99,591 + +1.3 99,592 - -2.9 99,592 - -0.5 99,592 - +0.9 99,592 - +0.9 99,593 + +3.4 99,596 - -0.4 99,597 + +2.1 99,603 + +2.8 99,603 + -2.1 99,603 + -0.5 99,605 + -0.5 99,605 + +2.9 99,606 - -1.1 99,606 - -1.3 99,606 - -1.5 99,606 - +1.1 99,606 - -2.1 99,607 + -1.3 99,607 + -1.8 99,607 + -2.7 99,607 + -2.0 99,607 + +0.2 99,607 + +1.3 99,617 + -0.7
Or see this region's nucleotide sequence