Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00475

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
86,397	-		MMJJ_RS00470	0.71	-2.4
86,405	+		MMJJ_RS00470	0.71	-1.3
86,437	+		MMJJ_RS00470	0.72	+1.3
86,442	-		MMJJ_RS00470	0.72	+2.3
86,443	+		MMJJ_RS00470	0.72	+1.8
86,456	-		MMJJ_RS00470	0.73	-1.8
86,475	-		MMJJ_RS00470	0.73	-2.1
86,541	-		MMJJ_RS00470	0.76	-3.7
86,552	+		MMJJ_RS00470	0.76	+1.6
86,572	-		MMJJ_RS00470	0.77	-2.0
86,572	-		MMJJ_RS00470	0.77	-2.3
86,573	+		MMJJ_RS00470	0.77	+1.8
86,578	-		MMJJ_RS00470	0.77	+0.7
86,579	+		MMJJ_RS00470	0.77	-1.6
86,581	-		MMJJ_RS00470	0.77	+1.1
86,581	-		MMJJ_RS00470	0.77	+2.1
86,582	+		MMJJ_RS00470	0.77	-2.8
86,582	+		MMJJ_RS00470	0.77	+0.1
86,582	+		MMJJ_RS00470	0.77	-1.3
86,598	-		MMJJ_RS00470	0.77	+1.5
86,602	-		MMJJ_RS00470	0.78	-2.0
86,603	+		MMJJ_RS00470	0.78	-0.7
86,603	+		MMJJ_RS00470	0.78	-1.0
86,604	-		MMJJ_RS00470	0.78	+1.9
86,605	+		MMJJ_RS00470	0.78	-3.6
86,605	+		MMJJ_RS00470	0.78	-1.5
86,622	-		MMJJ_RS00470	0.78	-0.7
86,671	+		MMJJ_RS00470	0.80	-0.9
86,693	-				+1.1
86,693	-		MMJJ_RS00470	0.80	-4.3
86,694	+		MMJJ_RS00470	0.81	-2.5
86,696	-		MMJJ_RS00470	0.81	-1.5
86,697	+		MMJJ_RS00470	0.81	+2.1
86,708	+		MMJJ_RS00470	0.81	-1.2
86,708	+		MMJJ_RS00470	0.81	+2.4
86,732	-		MMJJ_RS00470	0.82	-2.6
86,732	-		MMJJ_RS00470	0.82	+0.1
86,732	-		MMJJ_RS00470	0.82	-3.6
86,739	-		MMJJ_RS00470	0.82	-3.1
86,772	-		MMJJ_RS00470	0.83	-2.7
86,790	-		MMJJ_RS00470	0.84	+0.8
86,791	+		MMJJ_RS00470	0.84	+1.9
86,794	-		MMJJ_RS00470	0.84	-0.9
86,795	+		MMJJ_RS00470	0.84	-0.4
86,795	+		MMJJ_RS00470	0.84	+2.4
86,795	+		MMJJ_RS00470	0.84	-2.6
86,795	+		MMJJ_RS00470	0.84	-2.3
86,875	-		MMJJ_RS00470	0.86	-1.0
86,875	-		MMJJ_RS00470	0.86	-3.6
86,876	+		MMJJ_RS00470	0.86	-0.7
86,876	+		MMJJ_RS00470	0.86	-0.5
86,876	+		MMJJ_RS00470	0.86	-2.8
86,887	-		MMJJ_RS00470	0.87	-0.5
86,919	-		MMJJ_RS00470	0.88	+0.9
86,919	-		MMJJ_RS00470	0.88	-2.3
86,920	+		MMJJ_RS00470	0.88	+0.3
86,920	+		MMJJ_RS00470	0.88	+1.5
86,920	+		MMJJ_RS00470	0.88	+3.3
86,920	+		MMJJ_RS00470	0.88	-1.4
86,934	-		MMJJ_RS00470	0.88	-1.7
87,004	-				-2.0
87,005	+				+1.1
87,010	+				+3.2
87,010	+				-0.2
87,010	+				-0.6
87,010	+				+4.1
87,010	+				+1.4
87,029	-				-0.1
87,029	-				-1.5
87,032	+				-0.1
87,050	-				+2.6
87,051	+				-0.2
87,118	+				-0.4
87,158	-				+1.7
87,159	+				-1.8
87,168	-				+1.5
87,168	-				+1.2
87,168	-				+1.8
87,168	-				-0.8
87,168	-				+1.0
87,170	-				-3.3
87,170	-				+1.1
87,170	-				-1.9
87,170	-				+0.9
87,172	-				-1.4
87,172	-				+1.1
87,172	-				-0.0
87,293	-				-0.3
87,306	-				-0.7
87,387	+				+2.6
87,387	+				+2.1
87,393	-				-0.5
87,393	-				+1.1
87,393	-				+2.8
87,394	+				-0.5
87,395	-				-1.5
87,417	+				-0.9
87,724	+		MMJJ_RS00475	0.28	-2.5
87,917	+		MMJJ_RS00475	0.43	-2.1
88,012	-		MMJJ_RS00475	0.51	+1.1
88,477	+		MMJJ_RS00475	0.89	+1.1
88,558	+				-1.9
88,687	-				-0.1
88,688	+				-2.5
88,692	+				+0.3
88,692	+				-0.9
88,692	+				-3.0
88,718	+				+1.4
88,720	-				-0.8
88,741	-				-1.3
88,750	-				-3.4
88,750	-				+1.9
88,751	+				-1.8
88,766	-				-2.3
88,766	-				-0.6
88,822	-				-2.2
88,822	-				-1.9
88,822	-				-2.5
88,822	-				-1.6
88,822	-				+2.9
88,822	-				-0.5
88,823	+				-1.4
88,823	+				-2.0
88,823	+				+0.8
88,823	+				-2.8
88,823	+				-1.7
88,823	+				-0.2
88,823	+				-2.1
88,823	+				+1.1
88,823	+				-1.5
88,840	+		MMJJ_RS00480	0.10	-1.3
88,843	-		MMJJ_RS00480	0.10	-0.3
88,844	+		MMJJ_RS00480	0.10	-0.8
88,859	-		MMJJ_RS00480	0.12	-1.7
88,874	-		MMJJ_RS00480	0.13	-0.2
88,882	+		MMJJ_RS00480	0.13	-1.5
88,882	+		MMJJ_RS00480	0.13	-0.9
88,884	+		MMJJ_RS00480	0.14	-0.2
88,933	-		MMJJ_RS00480	0.17	+3.1
88,935	-		MMJJ_RS00480	0.18	+1.2
88,935	-		MMJJ_RS00480	0.18	-1.5
88,936	+		MMJJ_RS00480	0.18	+0.3
88,936	+		MMJJ_RS00480	0.18	-0.2
88,968	+		MMJJ_RS00480	0.20	-0.6
88,996	-		MMJJ_RS00480	0.22	-2.8
88,997	+		MMJJ_RS00480	0.22	-1.3
89,001	+		MMJJ_RS00480	0.23	-1.6
89,018	-		MMJJ_RS00480	0.24	+1.9
89,018	-		MMJJ_RS00480	0.24	-0.9
89,060	-		MMJJ_RS00480	0.27	+1.7
89,141	-		MMJJ_RS00480	0.34	+1.2
89,142	+		MMJJ_RS00480	0.34	-0.7
89,214	-		MMJJ_RS00480	0.39	-3.6
89,234	-		MMJJ_RS00480	0.41	-0.1
89,235	+		MMJJ_RS00480	0.41	+0.1
89,281	-		MMJJ_RS00480	0.45	+1.7
89,304	-		MMJJ_RS00480	0.47	-2.3
89,304	-				+1.1
89,304	-		MMJJ_RS00480	0.47	+0.4
89,305	+		MMJJ_RS00480	0.47	-2.3
89,305	+		MMJJ_RS00480	0.47	-0.9
89,305	+		MMJJ_RS00480	0.47	-0.6
89,305	+		MMJJ_RS00480	0.47	+2.2
89,307	+		MMJJ_RS00480	0.47	-2.9
89,307	+		MMJJ_RS00480	0.47	-2.1
89,403	-		MMJJ_RS00480	0.54	-0.8
89,475	-		MMJJ_RS00480	0.60	-2.5
89,475	-		MMJJ_RS00480	0.60	-2.9
89,564	-		MMJJ_RS00480	0.67	-2.2
89,607	+		MMJJ_RS00480	0.70	-0.0