Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00440 and MMJJ_RS09330 are separated by 35 nucleotides MMJJ_RS09330 and MMJJ_RS00445 are separated by 87 nucleotides MMJJ_RS00445 and MMJJ_RS00450 are separated by 11 nucleotides MMJJ_RS00450 and MMJJ_RS00455 are separated by 66 nucleotides
MMJJ_RS00440: MMJJ_RS00440 - selenide, water dikinase SelD, at 79,545 to 80,552
_RS00440
MMJJ_RS09330: MMJJ_RS09330 - hypothetical protein, at 80,588 to 80,746
_RS09330
MMJJ_RS00445: MMJJ_RS00445 - class III signal peptide-containing protein, at 80,834 to 81,061
_RS00445
MMJJ_RS00450: MMJJ_RS00450 - DUF126 domain-containing protein, at 81,073 to 81,465
_RS00450
MMJJ_RS00455: MMJJ_RS00455 - NOG1 family protein, at 81,532 to 82,569
_RS00455
Position (kb) 81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 80.169 kb on + strand, within MMJJ_RS00440 at 80.407 kb on - strand, within MMJJ_RS00440 at 80.590 kb on + strand at 80.610 kb on - strand, within MMJJ_RS09330 at 80.683 kb on - strand, within MMJJ_RS09330 at 80.684 kb on + strand, within MMJJ_RS09330 at 80.684 kb on + strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.718 kb on - strand, within MMJJ_RS09330 at 80.719 kb on + strand, within MMJJ_RS09330 at 80.750 kb on + strand at 80.750 kb on + strand at 80.768 kb on - strand at 80.768 kb on - strand at 80.772 kb on - strand at 80.773 kb on + strand at 80.773 kb on + strand at 80.773 kb on + strand at 80.774 kb on - strand at 80.784 kb on - strand at 80.794 kb on - strand at 80.794 kb on - strand at 80.795 kb on + strand at 80.799 kb on + strand at 80.805 kb on + strand at 80.816 kb on + strand at 80.823 kb on + strand at 80.912 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.934 kb on + strand, within MMJJ_RS00445 at 80.939 kb on - strand, within MMJJ_RS00445 at 80.943 kb on - strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.950 kb on - strand, within MMJJ_RS00445 at 80.968 kb on - strand at 80.974 kb on + strand, within MMJJ_RS00445 at 81.008 kb on + strand, within MMJJ_RS00445 at 81.008 kb on + strand, within MMJJ_RS00445 at 81.029 kb on + strand, within MMJJ_RS00445 at 81.048 kb on - strand at 81.049 kb on + strand at 81.049 kb on + strand at 81.231 kb on + strand, within MMJJ_RS00450 at 81.271 kb on - strand, within MMJJ_RS00450 at 81.388 kb on + strand, within MMJJ_RS00450 at 81.416 kb on - strand, within MMJJ_RS00450 at 81.417 kb on + strand at 81.505 kb on + strand at 81.579 kb on + strand at 81.579 kb on + strand at 81.579 kb on + strand at 81.900 kb on - strand at 82.229 kb on + strand, within MMJJ_RS00455 at 82.430 kb on - strand, within MMJJ_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 80,169 + MMJJ_RS00440 0.62 +3.9 80,407 - MMJJ_RS00440 0.86 +2.8 80,590 + +0.1 80,610 - MMJJ_RS09330 0.14 -2.1 80,683 - MMJJ_RS09330 0.60 +2.2 80,684 + MMJJ_RS09330 0.60 +0.1 80,684 + MMJJ_RS09330 0.60 -1.5 80,708 - MMJJ_RS09330 0.75 +0.7 80,708 - MMJJ_RS09330 0.75 +1.5 80,708 - MMJJ_RS09330 0.75 -2.7 80,709 + MMJJ_RS09330 0.76 +2.9 80,709 + MMJJ_RS09330 0.76 -0.9 80,709 + MMJJ_RS09330 0.76 -0.5 80,718 - MMJJ_RS09330 0.82 -1.3 80,719 + MMJJ_RS09330 0.82 +2.4 80,750 + +2.1 80,750 + +0.5 80,768 - -0.1 80,768 - -0.9 80,772 - -2.4 80,773 + +0.5 80,773 + +3.5 80,773 + -0.1 80,774 - -4.0 80,784 - -2.9 80,794 - -2.7 80,794 - +0.1 80,795 + +5.5 80,799 + -0.4 80,805 + +1.8 80,816 + +1.5 80,823 + +2.8 80,912 + MMJJ_RS00445 0.34 -0.3 80,923 + MMJJ_RS00445 0.39 +1.6 80,923 + MMJJ_RS00445 0.39 +1.4 80,923 + MMJJ_RS00445 0.39 -2.5 80,934 + MMJJ_RS00445 0.44 +0.1 80,939 - MMJJ_RS00445 0.46 +1.1 80,943 - MMJJ_RS00445 0.48 -0.7 80,944 + MMJJ_RS00445 0.48 +1.1 80,944 + MMJJ_RS00445 0.48 +0.2 80,944 + MMJJ_RS00445 0.48 +3.7 80,950 - MMJJ_RS00445 0.51 -2.5 80,968 - -1.3 80,974 + MMJJ_RS00445 0.61 -0.7 81,008 + MMJJ_RS00445 0.76 +3.4 81,008 + MMJJ_RS00445 0.76 +1.0 81,029 + MMJJ_RS00445 0.86 +2.6 81,048 - +0.1 81,049 + -0.9 81,049 + -0.8 81,231 + MMJJ_RS00450 0.40 -1.9 81,271 - MMJJ_RS00450 0.50 -1.9 81,388 + MMJJ_RS00450 0.80 -1.7 81,416 - MMJJ_RS00450 0.87 +0.1 81,417 + +0.1 81,505 + -0.9 81,579 + -1.7 81,579 + -1.9 81,579 + +0.1 81,900 - -0.9 82,229 + MMJJ_RS00455 0.67 -1.7 82,430 - MMJJ_RS00455 0.87 -0.5
Or see this region's nucleotide sequence