Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00440

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
78,742	+		MMJJ_RS00430	0.86	-1.5
78,775	+		MMJJ_RS00430	0.90	-0.5
78,876	+				+3.2
78,876	+				+1.5
78,876	+				-1.8
78,895	-				-1.4
78,904	-				-1.3
78,905	+				-1.4
78,935	-				-0.5
78,940	-				-1.3
78,941	+				-0.5
78,948	+		MMJJ_RS00435	0.11	+0.9
79,014	+		MMJJ_RS00435	0.22	+1.2
79,023	-		MMJJ_RS00435	0.24	+1.9
79,028	-		MMJJ_RS00435	0.25	+1.7
79,029	+		MMJJ_RS00435	0.25	-1.6
79,064	-		MMJJ_RS00435	0.31	-2.1
79,064	-		MMJJ_RS00435	0.31	+0.6
79,069	-		MMJJ_RS00435	0.32	+1.0
79,070	+		MMJJ_RS00435	0.32	-1.5
79,271	-		MMJJ_RS00435	0.66	-2.0
79,271	-		MMJJ_RS00435	0.66	-0.2
79,271	-		MMJJ_RS00435	0.66	+1.8
79,271	-		MMJJ_RS00435	0.66	-2.4
79,271	-		MMJJ_RS00435	0.66	+0.8
79,271	-		MMJJ_RS00435	0.66	-1.3
79,272	+		MMJJ_RS00435	0.67	+2.8
79,272	+		MMJJ_RS00435	0.67	+2.6
79,272	+		MMJJ_RS00435	0.67	+2.9
79,272	+		MMJJ_RS00435	0.67	+3.5
79,272	+		MMJJ_RS00435	0.67	-0.1
79,272	+		MMJJ_RS00435	0.67	-0.7
79,283	-		MMJJ_RS00435	0.69	+0.4
79,284	+		MMJJ_RS00435	0.69	+0.6
79,332	-		MMJJ_RS00435	0.77	-0.1
79,350	-		MMJJ_RS00435	0.80	-0.8
79,351	+		MMJJ_RS00435	0.80	-1.1
79,376	-		MMJJ_RS00435	0.85	+0.8
79,377	+		MMJJ_RS00435	0.85	+2.5
79,392	-		MMJJ_RS00435	0.87	+2.4
79,392	-		MMJJ_RS00435	0.87	-0.3
79,392	-		MMJJ_RS00435	0.87	+5.4
79,398	-		MMJJ_RS00435	0.88	+2.1
79,398	-		MMJJ_RS00435	0.88	-0.8
79,419	+				-1.2
79,428	+				-0.0
79,428	+				+0.4
79,428	+				+0.0
79,428	+				-0.9
79,431	+				-0.5
79,431	+				+0.1
79,431	+				-2.3
79,462	-				+1.4
79,463	+				+1.8
79,479	-				-1.7
79,480	+				-2.3
79,480	+				+0.6
79,480	+				+0.2
79,481	-				+2.7
79,482	+				-2.1
79,482	+				-1.9
79,482	+				-1.1
79,482	+				+3.4
79,499	+				+2.7
79,531	-				+1.7
79,532	+				+1.1
79,551	+				+4.5
79,555	-				+3.2
79,601	+				+2.8
79,604	+				+0.1
79,604	+				+0.9
79,635	-				+0.1
79,726	-		MMJJ_RS00440	0.18	+3.0
79,727	+		MMJJ_RS00440	0.18	+3.1
79,764	+		MMJJ_RS00440	0.22	+4.6
79,780	-		MMJJ_RS00440	0.23	+1.6
79,780	-		MMJJ_RS00440	0.23	+1.0
79,780	-		MMJJ_RS00440	0.23	+2.9
79,780	-		MMJJ_RS00440	0.23	+3.4
79,780	-		MMJJ_RS00440	0.23	+5.1
79,780	-		MMJJ_RS00440	0.23	+4.3
79,780	-		MMJJ_RS00440	0.23	+1.9
79,781	+		MMJJ_RS00440	0.23	+3.9
79,781	+		MMJJ_RS00440	0.23	-2.1
79,781	+		MMJJ_RS00440	0.23	+3.2
79,781	+		MMJJ_RS00440	0.23	+4.3
79,783	+		MMJJ_RS00440	0.24	+4.2
79,819	-		MMJJ_RS00440	0.27	+2.6
79,933	-		MMJJ_RS00440	0.38	+3.8
79,949	+		MMJJ_RS00440	0.40	-0.3
79,949	+		MMJJ_RS00440	0.40	+1.7
79,995	+		MMJJ_RS00440	0.45	-0.7
79,995	+		MMJJ_RS00440	0.45	+0.0
79,995	+		MMJJ_RS00440	0.45	+3.9
79,995	+		MMJJ_RS00440	0.45	+4.6
80,009	-		MMJJ_RS00440	0.46	-3.2
80,024	+		MMJJ_RS00440	0.48	-2.5
80,169	+		MMJJ_RS00440	0.62	+3.9
80,407	-		MMJJ_RS00440	0.86	+2.8
80,590	+				+0.1
80,610	-		MMJJ_RS09330	0.14	-2.1
80,683	-		MMJJ_RS09330	0.60	+2.2
80,684	+		MMJJ_RS09330	0.60	+0.1
80,684	+		MMJJ_RS09330	0.60	-1.5
80,708	-		MMJJ_RS09330	0.75	+0.7
80,708	-		MMJJ_RS09330	0.75	+1.5
80,708	-		MMJJ_RS09330	0.75	-2.7
80,709	+		MMJJ_RS09330	0.76	+2.9
80,709	+		MMJJ_RS09330	0.76	-0.9
80,709	+		MMJJ_RS09330	0.76	-0.5
80,718	-		MMJJ_RS09330	0.82	-1.3
80,719	+		MMJJ_RS09330	0.82	+2.4
80,750	+				+2.1
80,750	+				+0.5
80,768	-				-0.1
80,768	-				-0.9
80,772	-				-2.4
80,773	+				+0.5
80,773	+				+3.5
80,773	+				-0.1
80,774	-				-4.0
80,784	-				-2.9
80,794	-				-2.7
80,794	-				+0.1
80,795	+				+5.5
80,799	+				-0.4
80,805	+				+1.8
80,816	+				+1.5
80,823	+				+2.8
80,912	+		MMJJ_RS00445	0.34	-0.3
80,923	+		MMJJ_RS00445	0.39	+1.6
80,923	+		MMJJ_RS00445	0.39	+1.4
80,923	+		MMJJ_RS00445	0.39	-2.5
80,934	+		MMJJ_RS00445	0.44	+0.1
80,939	-		MMJJ_RS00445	0.46	+1.1
80,943	-		MMJJ_RS00445	0.48	-0.7
80,944	+		MMJJ_RS00445	0.48	+1.1
80,944	+		MMJJ_RS00445	0.48	+0.2
80,944	+		MMJJ_RS00445	0.48	+3.7
80,950	-		MMJJ_RS00445	0.51	-2.5
80,968	-				-1.3
80,974	+		MMJJ_RS00445	0.61	-0.7
81,008	+		MMJJ_RS00445	0.76	+3.4
81,008	+		MMJJ_RS00445	0.76	+1.0
81,029	+		MMJJ_RS00445	0.86	+2.6
81,048	-				+0.1
81,049	+				-0.9
81,049	+				-0.8
81,231	+		MMJJ_RS00450	0.40	-1.9
81,271	-		MMJJ_RS00450	0.50	-1.9
81,388	+		MMJJ_RS00450	0.80	-1.7
81,416	-		MMJJ_RS00450	0.87	+0.1
81,417	+				+0.1
81,505	+				-0.9