Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00430

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
76,982	-				+2.9
76,998	+		MMJJ_RS00420	0.10	+2.1
76,999	-		MMJJ_RS00420	0.11	+2.5
77,030	-		MMJJ_RS00420	0.19	+0.9
77,045	-		MMJJ_RS00420	0.23	-2.9
77,108	-		MMJJ_RS00420	0.39	-0.5
77,138	-		MMJJ_RS00420	0.47	-2.3
77,138	-		MMJJ_RS00420	0.47	+2.5
77,138	-		MMJJ_RS00420	0.47	+1.4
77,139	+		MMJJ_RS00420	0.48	+2.5
77,139	+		MMJJ_RS00420	0.48	-1.3
77,199	+		MMJJ_RS00420	0.63	-2.4
77,199	+		MMJJ_RS00420	0.63	-1.5
77,199	+		MMJJ_RS00420	0.63	+2.5
77,200	-		MMJJ_RS00420	0.64	-2.0
77,222	-		MMJJ_RS00420	0.69	+0.1
77,222	-		MMJJ_RS00420	0.69	-0.1
77,223	+		MMJJ_RS00420	0.70	+1.6
77,228	-		MMJJ_RS00420	0.71	+1.0
77,229	+		MMJJ_RS00420	0.71	-1.1
77,252	+		MMJJ_RS00420	0.77	-1.7
77,262	+		MMJJ_RS00420	0.80	-2.7
77,266	-		MMJJ_RS00420	0.81	-0.9
77,367	-				+3.6
77,370	-				+1.0
77,370	-				+0.6
77,371	+				-0.7
77,372	-				+0.9
77,372	-				-3.0
77,373	+				+0.7
77,373	+				-0.7
77,374	-				+1.4
77,374	-				+1.8
77,375	+				+0.5
77,379	+				-3.1
77,427	+				-0.5
77,441	-				-1.3
77,441	-				+2.2
77,445	-				+2.3
77,446	+				-1.4
77,446	+				-2.6
77,446	+				-0.8
77,446	+				+0.8
77,446	+				-0.7
77,447	-				-0.0
77,451	+				+0.7
77,456	+				+0.5
77,465	-				+1.7
77,469	+				-3.0
77,469	+				-1.4
77,484	-				+1.5
77,484	-				-1.3
77,485	+				-0.0
77,485	+				+1.0
77,485	+				-0.9
77,486	-				-1.6
77,486	-				-1.7
77,486	-				-1.2
77,486	-				-3.1
77,486	-				+1.0
77,486	-				+1.1
77,486	-				-2.3
77,487	+				+1.5
77,487	+				-0.5
77,487	+				+0.1
77,487	+				+0.1
77,487	+				+2.7
77,488	-				-0.3
77,488	-				+1.1
77,489	+				+0.1
77,489	+				-1.9
77,489	+				-1.1
77,489	+				-0.8
77,500	-				+1.3
77,500	-				-0.5
77,506	+				+1.7
77,541	-				+0.9
77,541	-				+0.7
77,541	-				-0.9
77,541	-				-0.3
77,542	+				-2.5
77,542	+				+0.6
77,542	+				-1.6
77,544	-				-0.5
77,562	-				-0.9
77,563	+				-0.1
77,563	+				+1.2
77,577	-		MMJJ_RS00425	0.13	-4.1
77,620	-		MMJJ_RS00425	0.24	-0.1
77,621	+		MMJJ_RS00425	0.25	+0.3
77,621	+		MMJJ_RS00425	0.25	+3.8
77,675	-		MMJJ_RS00425	0.38	+0.5
77,874	+		MMJJ_RS00425	0.89	+0.6
77,927	-				+0.1
77,932	-				-0.5
77,933	+				-1.2
77,933	+				+0.6
77,933	+				-2.2
77,934	-				-0.5
77,935	+				-1.7
77,935	+				-1.3
77,984	+				-0.5
78,087	-		MMJJ_RS00430	0.15	-1.9
78,357	-		MMJJ_RS00430	0.44	+1.6
78,485	+		MMJJ_RS00430	0.58	-1.9
78,742	+		MMJJ_RS00430	0.86	-1.5
78,775	+		MMJJ_RS00430	0.90	-0.5
78,876	+				+3.2
78,876	+				+1.5
78,876	+				-1.8
78,895	-				-1.4
78,904	-				-1.3
78,905	+				-1.4
78,935	-				-0.5
78,940	-				-1.3
78,941	+				-0.5
78,948	+		MMJJ_RS00435	0.11	+0.9
79,014	+		MMJJ_RS00435	0.22	+1.2
79,023	-		MMJJ_RS00435	0.24	+1.9
79,028	-		MMJJ_RS00435	0.25	+1.7
79,029	+		MMJJ_RS00435	0.25	-1.6
79,064	-		MMJJ_RS00435	0.31	-2.1
79,064	-		MMJJ_RS00435	0.31	+0.6
79,069	-		MMJJ_RS00435	0.32	+1.0
79,070	+		MMJJ_RS00435	0.32	-1.5
79,271	-		MMJJ_RS00435	0.66	-2.0
79,271	-		MMJJ_RS00435	0.66	-0.2
79,271	-		MMJJ_RS00435	0.66	+1.8
79,271	-		MMJJ_RS00435	0.66	-2.4
79,271	-		MMJJ_RS00435	0.66	+0.8
79,271	-		MMJJ_RS00435	0.66	-1.3
79,272	+		MMJJ_RS00435	0.67	+2.8
79,272	+		MMJJ_RS00435	0.67	+2.6
79,272	+		MMJJ_RS00435	0.67	+2.9
79,272	+		MMJJ_RS00435	0.67	+3.5
79,272	+		MMJJ_RS00435	0.67	-0.1
79,272	+		MMJJ_RS00435	0.67	-0.7
79,283	-		MMJJ_RS00435	0.69	+0.4
79,284	+		MMJJ_RS00435	0.69	+0.6
79,332	-		MMJJ_RS00435	0.77	-0.1
79,350	-		MMJJ_RS00435	0.80	-0.8
79,351	+		MMJJ_RS00435	0.80	-1.1
79,376	-		MMJJ_RS00435	0.85	+0.8
79,377	+		MMJJ_RS00435	0.85	+2.5
79,392	-		MMJJ_RS00435	0.87	+2.4
79,392	-		MMJJ_RS00435	0.87	-0.3
79,392	-		MMJJ_RS00435	0.87	+5.4
79,398	-		MMJJ_RS00435	0.88	+2.1
79,398	-		MMJJ_RS00435	0.88	-0.8
79,419	+				-1.2
79,428	+				-0.0
79,428	+				+0.4
79,428	+				+0.0
79,428	+				-0.9
79,431	+				-0.5
79,431	+				+0.1
79,431	+				-2.3
79,462	-				+1.4
79,463	+				+1.8
79,479	-				-1.7
79,480	+				-2.3
79,480	+				+0.6
79,480	+				+0.2
79,481	-				+2.7
79,482	+				-2.1
79,482	+				-1.9
79,482	+				-1.1
79,482	+				+3.4
79,499	+				+2.7
79,531	-				+1.7
79,532	+				+1.1
79,551	+				+4.5
79,555	-				+3.2
79,601	+				+2.8
79,604	+				+0.1
79,604	+				+0.9
79,635	-				+0.1
79,726	-		MMJJ_RS00440	0.18	+3.0
79,727	+		MMJJ_RS00440	0.18	+3.1
79,764	+		MMJJ_RS00440	0.22	+4.6
79,780	-		MMJJ_RS00440	0.23	+1.6
79,780	-		MMJJ_RS00440	0.23	+1.0
79,780	-		MMJJ_RS00440	0.23	+2.9
79,780	-		MMJJ_RS00440	0.23	+3.4
79,780	-		MMJJ_RS00440	0.23	+5.1
79,780	-		MMJJ_RS00440	0.23	+4.3
79,780	-		MMJJ_RS00440	0.23	+1.9
79,781	+		MMJJ_RS00440	0.23	+3.9
79,781	+		MMJJ_RS00440	0.23	-2.1
79,781	+		MMJJ_RS00440	0.23	+3.2
79,781	+		MMJJ_RS00440	0.23	+4.3
79,783	+		MMJJ_RS00440	0.24	+4.2
79,819	-		MMJJ_RS00440	0.27	+2.6