Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00405 and MMJJ_RS00410 are separated by 43 nucleotides MMJJ_RS00410 and MMJJ_RS00415 are separated by 43 nucleotides MMJJ_RS00415 and MMJJ_RS00420 are separated by 14 nucleotides MMJJ_RS00420 and MMJJ_RS00425 are separated by 185 nucleotides
MMJJ_RS00405: MMJJ_RS00405 - flavodoxin family protein, at 75,364 to 75,945
_RS00405
MMJJ_RS00410: MMJJ_RS00410 - hypothetical protein, at 75,989 to 76,417
_RS00410
MMJJ_RS00415: MMJJ_RS00415 - DedA family protein, at 76,461 to 76,943
_RS00415
MMJJ_RS00420: MMJJ_RS00420 - CBS domain-containing protein, at 76,958 to 77,338
_RS00420
MMJJ_RS00425: MMJJ_RS00425 - hypothetical protein, at 77,524 to 77,916
_RS00425
Position (kb) 76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 75.472 kb on + strand, within MMJJ_RS00405 at 75.494 kb on - strand, within MMJJ_RS00405 at 75.540 kb on - strand, within MMJJ_RS00405 at 75.540 kb on - strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.541 kb on + strand, within MMJJ_RS00405 at 75.548 kb on - strand, within MMJJ_RS00405 at 75.596 kb on - strand, within MMJJ_RS00405 at 75.596 kb on - strand, within MMJJ_RS00405 at 75.616 kb on - strand, within MMJJ_RS00405 at 75.616 kb on - strand, within MMJJ_RS00405 at 75.685 kb on + strand, within MMJJ_RS00405 at 75.754 kb on + strand, within MMJJ_RS00405 at 75.781 kb on + strand, within MMJJ_RS00405 at 75.827 kb on + strand, within MMJJ_RS00405 at 75.941 kb on - strand at 75.942 kb on + strand at 75.943 kb on - strand at 75.946 kb on - strand at 75.947 kb on + strand at 75.966 kb on - strand at 75.976 kb on - strand at 76.026 kb on - strand at 76.030 kb on + strand at 76.077 kb on - strand, within MMJJ_RS00410 at 76.082 kb on + strand, within MMJJ_RS00410 at 76.085 kb on + strand, within MMJJ_RS00410 at 76.086 kb on - strand, within MMJJ_RS00410 at 76.086 kb on - strand, within MMJJ_RS00410 at 76.086 kb on - strand, within MMJJ_RS00410 at 76.086 kb on - strand, within MMJJ_RS00410 at 76.102 kb on - strand, within MMJJ_RS00410 at 76.152 kb on - strand, within MMJJ_RS00410 at 76.198 kb on - strand, within MMJJ_RS00410 at 76.198 kb on - strand, within MMJJ_RS00410 at 76.251 kb on - strand, within MMJJ_RS00410 at 76.252 kb on + strand, within MMJJ_RS00410 at 76.268 kb on - strand, within MMJJ_RS00410 at 76.268 kb on - strand, within MMJJ_RS00410 at 76.269 kb on + strand, within MMJJ_RS00410 at 76.269 kb on + strand, within MMJJ_RS00410 at 76.269 kb on + strand, within MMJJ_RS00410 at 76.269 kb on + strand, within MMJJ_RS00410 at 76.292 kb on + strand, within MMJJ_RS00410 at 76.292 kb on + strand, within MMJJ_RS00410 at 76.292 kb on + strand, within MMJJ_RS00410 at 76.299 kb on + strand, within MMJJ_RS00410 at 76.299 kb on + strand, within MMJJ_RS00410 at 76.416 kb on + strand at 76.416 kb on + strand at 76.416 kb on + strand at 76.424 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.463 kb on + strand at 76.463 kb on + strand at 76.482 kb on - strand at 76.483 kb on + strand at 76.513 kb on + strand, within MMJJ_RS00415 at 76.519 kb on + strand, within MMJJ_RS00415 at 76.582 kb on + strand, within MMJJ_RS00415 at 76.647 kb on - strand, within MMJJ_RS00415 at 76.647 kb on - strand, within MMJJ_RS00415 at 76.680 kb on + strand, within MMJJ_RS00415 at 76.751 kb on - strand, within MMJJ_RS00415 at 76.751 kb on - strand, within MMJJ_RS00415 at 76.763 kb on - strand, within MMJJ_RS00415 at 76.783 kb on + strand, within MMJJ_RS00415 at 76.833 kb on + strand, within MMJJ_RS00415 at 76.833 kb on + strand, within MMJJ_RS00415 at 76.836 kb on - strand, within MMJJ_RS00415 at 76.837 kb on + strand, within MMJJ_RS00415 at 76.837 kb on + strand, within MMJJ_RS00415 at 76.838 kb on - strand, within MMJJ_RS00415 at 76.839 kb on + strand, within MMJJ_RS00415 at 76.839 kb on + strand, within MMJJ_RS00415 at 76.839 kb on + strand, within MMJJ_RS00415 at 76.845 kb on - strand, within MMJJ_RS00415 at 76.903 kb on - strand at 76.908 kb on + strand at 76.908 kb on + strand at 76.911 kb on - strand at 76.982 kb on - strand at 76.998 kb on + strand, within MMJJ_RS00420 at 76.999 kb on - strand, within MMJJ_RS00420 at 77.030 kb on - strand, within MMJJ_RS00420 at 77.045 kb on - strand, within MMJJ_RS00420 at 77.108 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.138 kb on - strand, within MMJJ_RS00420 at 77.139 kb on + strand, within MMJJ_RS00420 at 77.139 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.199 kb on + strand, within MMJJ_RS00420 at 77.200 kb on - strand, within MMJJ_RS00420 at 77.222 kb on - strand, within MMJJ_RS00420 at 77.222 kb on - strand, within MMJJ_RS00420 at 77.223 kb on + strand, within MMJJ_RS00420 at 77.228 kb on - strand, within MMJJ_RS00420 at 77.229 kb on + strand, within MMJJ_RS00420 at 77.252 kb on + strand, within MMJJ_RS00420 at 77.262 kb on + strand, within MMJJ_RS00420 at 77.266 kb on - strand, within MMJJ_RS00420 at 77.367 kb on - strand at 77.370 kb on - strand at 77.370 kb on - strand at 77.371 kb on + strand at 77.372 kb on - strand at 77.372 kb on - strand at 77.373 kb on + strand at 77.373 kb on + strand at 77.374 kb on - strand at 77.374 kb on - strand at 77.375 kb on + strand at 77.379 kb on + strand at 77.427 kb on + strand at 77.441 kb on - strand at 77.441 kb on - strand at 77.445 kb on - strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.446 kb on + strand at 77.447 kb on - strand at 77.451 kb on + strand at 77.456 kb on + strand at 77.465 kb on - strand at 77.469 kb on + strand at 77.469 kb on + strand at 77.484 kb on - strand at 77.484 kb on - strand at 77.485 kb on + strand at 77.485 kb on + strand at 77.485 kb on + strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.486 kb on - strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.487 kb on + strand at 77.488 kb on - strand at 77.488 kb on - strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.489 kb on + strand at 77.500 kb on - strand at 77.500 kb on - strand at 77.506 kb on + strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.541 kb on - strand at 77.542 kb on + strand at 77.542 kb on + strand at 77.542 kb on + strand at 77.544 kb on - strand at 77.562 kb on - strand at 77.563 kb on + strand at 77.563 kb on + strand at 77.577 kb on - strand, within MMJJ_RS00425 at 77.620 kb on - strand, within MMJJ_RS00425 at 77.621 kb on + strand, within MMJJ_RS00425 at 77.621 kb on + strand, within MMJJ_RS00425 at 77.675 kb on - strand, within MMJJ_RS00425 at 77.874 kb on + strand, within MMJJ_RS00425 at 77.927 kb on - strand at 77.932 kb on - strand at 77.933 kb on + strand at 77.933 kb on + strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 75,472 + MMJJ_RS00405 0.19 +1.4 75,494 - MMJJ_RS00405 0.22 +0.8 75,540 - MMJJ_RS00405 0.30 +0.1 75,540 - MMJJ_RS00405 0.30 -1.1 75,541 + MMJJ_RS00405 0.30 +1.3 75,541 + MMJJ_RS00405 0.30 -0.9 75,541 + MMJJ_RS00405 0.30 -2.6 75,548 - MMJJ_RS00405 0.32 +3.2 75,596 - MMJJ_RS00405 0.40 -1.2 75,596 - MMJJ_RS00405 0.40 -0.5 75,616 - MMJJ_RS00405 0.43 +0.1 75,616 - MMJJ_RS00405 0.43 -0.7 75,685 + MMJJ_RS00405 0.55 -1.2 75,754 + MMJJ_RS00405 0.67 +1.1 75,781 + MMJJ_RS00405 0.72 +1.0 75,827 + MMJJ_RS00405 0.80 -1.6 75,941 - +3.0 75,942 + +1.7 75,943 - -1.7 75,946 - -0.4 75,947 + -0.4 75,966 - -2.5 75,976 - +3.9 76,026 - +2.6 76,030 + -0.9 76,077 - MMJJ_RS00410 0.21 +0.2 76,082 + MMJJ_RS00410 0.22 +0.5 76,085 + MMJJ_RS00410 0.22 +2.2 76,086 - MMJJ_RS00410 0.23 +1.1 76,086 - MMJJ_RS00410 0.23 -0.3 76,086 - MMJJ_RS00410 0.23 -0.3 76,086 - MMJJ_RS00410 0.23 -0.1 76,102 - MMJJ_RS00410 0.26 +2.4 76,152 - MMJJ_RS00410 0.38 -1.4 76,198 - MMJJ_RS00410 0.49 +2.2 76,198 - MMJJ_RS00410 0.49 +1.0 76,251 - MMJJ_RS00410 0.61 -1.3 76,252 + MMJJ_RS00410 0.61 +0.2 76,268 - MMJJ_RS00410 0.65 -3.5 76,268 - MMJJ_RS00410 0.65 +2.7 76,269 + MMJJ_RS00410 0.65 +0.1 76,269 + MMJJ_RS00410 0.65 +1.7 76,269 + MMJJ_RS00410 0.65 -1.7 76,269 + MMJJ_RS00410 0.65 -0.6 76,292 + MMJJ_RS00410 0.71 +0.3 76,292 + MMJJ_RS00410 0.71 -1.2 76,292 + MMJJ_RS00410 0.71 -1.1 76,299 + MMJJ_RS00410 0.72 -0.9 76,299 + MMJJ_RS00410 0.72 -1.7 76,416 + +1.7 76,416 + +2.5 76,416 + -3.4 76,424 + +0.1 76,458 + +0.4 76,458 + -1.5 76,463 + +1.5 76,463 + -0.9 76,482 - -0.9 76,483 + -1.7 76,513 + MMJJ_RS00415 0.11 -0.2 76,519 + MMJJ_RS00415 0.12 -0.5 76,582 + MMJJ_RS00415 0.25 -2.1 76,647 - MMJJ_RS00415 0.39 -0.3 76,647 - MMJJ_RS00415 0.39 +3.1 76,680 + MMJJ_RS00415 0.45 -0.4 76,751 - MMJJ_RS00415 0.60 -1.9 76,751 - MMJJ_RS00415 0.60 +1.1 76,763 - MMJJ_RS00415 0.63 -1.3 76,783 + MMJJ_RS00415 0.67 +1.9 76,833 + MMJJ_RS00415 0.77 -1.9 76,833 + MMJJ_RS00415 0.77 +3.5 76,836 - MMJJ_RS00415 0.78 +3.6 76,837 + MMJJ_RS00415 0.78 -2.3 76,837 + MMJJ_RS00415 0.78 +0.1 76,838 - MMJJ_RS00415 0.78 -2.3 76,839 + MMJJ_RS00415 0.78 +2.5 76,839 + MMJJ_RS00415 0.78 -3.3 76,839 + MMJJ_RS00415 0.78 +3.2 76,845 - MMJJ_RS00415 0.80 +3.3 76,903 - -2.5 76,908 + -1.5 76,908 + +1.6 76,911 - +5.3 76,982 - +2.9 76,998 + MMJJ_RS00420 0.10 +2.1 76,999 - MMJJ_RS00420 0.11 +2.5 77,030 - MMJJ_RS00420 0.19 +0.9 77,045 - MMJJ_RS00420 0.23 -2.9 77,108 - MMJJ_RS00420 0.39 -0.5 77,138 - MMJJ_RS00420 0.47 -2.3 77,138 - MMJJ_RS00420 0.47 +2.5 77,138 - MMJJ_RS00420 0.47 +1.4 77,139 + MMJJ_RS00420 0.48 +2.5 77,139 + MMJJ_RS00420 0.48 -1.3 77,199 + MMJJ_RS00420 0.63 -2.4 77,199 + MMJJ_RS00420 0.63 -1.5 77,199 + MMJJ_RS00420 0.63 +2.5 77,200 - MMJJ_RS00420 0.64 -2.0 77,222 - MMJJ_RS00420 0.69 +0.1 77,222 - MMJJ_RS00420 0.69 -0.1 77,223 + MMJJ_RS00420 0.70 +1.6 77,228 - MMJJ_RS00420 0.71 +1.0 77,229 + MMJJ_RS00420 0.71 -1.1 77,252 + MMJJ_RS00420 0.77 -1.7 77,262 + MMJJ_RS00420 0.80 -2.7 77,266 - MMJJ_RS00420 0.81 -0.9 77,367 - +3.6 77,370 - +1.0 77,370 - +0.6 77,371 + -0.7 77,372 - +0.9 77,372 - -3.0 77,373 + +0.7 77,373 + -0.7 77,374 - +1.4 77,374 - +1.8 77,375 + +0.5 77,379 + -3.1 77,427 + -0.5 77,441 - -1.3 77,441 - +2.2 77,445 - +2.3 77,446 + -1.4 77,446 + -2.6 77,446 + -0.8 77,446 + +0.8 77,446 + -0.7 77,447 - -0.0 77,451 + +0.7 77,456 + +0.5 77,465 - +1.7 77,469 + -3.0 77,469 + -1.4 77,484 - +1.5 77,484 - -1.3 77,485 + -0.0 77,485 + +1.0 77,485 + -0.9 77,486 - -1.6 77,486 - -1.7 77,486 - -1.2 77,486 - -3.1 77,486 - +1.0 77,486 - +1.1 77,486 - -2.3 77,487 + +1.5 77,487 + -0.5 77,487 + +0.1 77,487 + +0.1 77,487 + +2.7 77,488 - -0.3 77,488 - +1.1 77,489 + +0.1 77,489 + -1.9 77,489 + -1.1 77,489 + -0.8 77,500 - +1.3 77,500 - -0.5 77,506 + +1.7 77,541 - +0.9 77,541 - +0.7 77,541 - -0.9 77,541 - -0.3 77,542 + -2.5 77,542 + +0.6 77,542 + -1.6 77,544 - -0.5 77,562 - -0.9 77,563 + -0.1 77,563 + +1.2 77,577 - MMJJ_RS00425 0.13 -4.1 77,620 - MMJJ_RS00425 0.24 -0.1 77,621 + MMJJ_RS00425 0.25 +0.3 77,621 + MMJJ_RS00425 0.25 +3.8 77,675 - MMJJ_RS00425 0.38 +0.5 77,874 + MMJJ_RS00425 0.89 +0.6 77,927 - +0.1 77,932 - -0.5 77,933 + -1.2 77,933 + +0.6 77,933 + -2.2 77,934 - -0.5 77,935 + -1.7 77,935 + -1.3
Or see this region's nucleotide sequence