Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00360

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
67,397	-		MMJJ_RS00350	0.40	-2.2
67,397	-		MMJJ_RS00350	0.40	-0.3
67,397	-		MMJJ_RS00350	0.40	-1.2
67,397	-		MMJJ_RS00350	0.40	-1.7
67,398	+		MMJJ_RS00350	0.40	+0.1
67,398	+		MMJJ_RS00350	0.40	-0.5
67,403	-		MMJJ_RS00350	0.41	-1.3
67,404	+		MMJJ_RS00350	0.41	-2.5
67,404	+				+1.1
67,404	+		MMJJ_RS00350	0.41	-1.5
67,408	-		MMJJ_RS00350	0.42	+1.2
67,408	-		MMJJ_RS00350	0.42	-0.1
67,409	+		MMJJ_RS00350	0.42	-0.3
67,409	+		MMJJ_RS00350	0.42	-1.5
67,433	-		MMJJ_RS00350	0.46	-0.5
67,437	+		MMJJ_RS00350	0.46	-1.5
67,439	-		MMJJ_RS00350	0.47	+0.1
67,439	-		MMJJ_RS00350	0.47	-2.3
67,439	-		MMJJ_RS00350	0.47	-1.7
67,439	-		MMJJ_RS00350	0.47	+1.4
67,439	-		MMJJ_RS00350	0.47	+0.8
67,440	+		MMJJ_RS00350	0.47	-2.4
67,451	+		MMJJ_RS00350	0.48	-4.4
67,451	+		MMJJ_RS00350	0.48	-0.3
67,451	+		MMJJ_RS00350	0.48	-0.1
67,453	-				+0.1
67,457	+		MMJJ_RS00350	0.49	+1.7
67,474	-		MMJJ_RS00350	0.52	-1.0
67,474	-		MMJJ_RS00350	0.52	-1.7
67,555	-		MMJJ_RS00350	0.64	+3.7
67,556	+		MMJJ_RS00350	0.65	-1.3
67,581	-		MMJJ_RS00350	0.68	-2.1
67,581	-		MMJJ_RS00350	0.68	+1.1
67,581	-		MMJJ_RS00350	0.68	+0.6
67,581	-		MMJJ_RS00350	0.68	-2.0
67,620	-		MMJJ_RS00350	0.74	+2.4
67,670	+		MMJJ_RS00350	0.82	+0.9
67,670	+		MMJJ_RS00350	0.82	+2.3
67,670	+		MMJJ_RS00350	0.82	+1.1
67,671	-		MMJJ_RS00350	0.82	+2.8
67,671	-		MMJJ_RS00350	0.82	+0.1
67,672	+		MMJJ_RS00350	0.82	+3.9
67,673	-		MMJJ_RS00350	0.82	-2.6
67,703	+		MMJJ_RS00350	0.87	+1.6
67,703	+		MMJJ_RS00350	0.87	+1.0
67,768	-				+0.6
67,771	-				+2.1
67,801	-				+0.9
67,801	-				-0.8
67,801	-				-0.6
67,802	+				+0.5
67,803	-				-0.9
67,803	-				-0.8
67,803	-				+0.5
67,804	+				+1.3
67,804	+				+0.6
67,804	+				+3.8
67,804	+				-1.7
67,804	+				+2.9
67,808	-				+0.8
67,808	-				-0.7
67,808	-				-0.3
67,809	+				-0.9
67,827	-				+1.2
67,827	-				-3.3
67,829	-				+1.3
67,829	-				-0.6
67,829	-				-2.5
67,829	-				-1.3
67,830	+				-1.4
67,830	+				-1.3
67,830	+				+1.0
67,830	+				+2.0
67,830	+				-2.0
67,830	+				-1.4
67,831	-				-0.4
67,831	-				+0.3
67,831	-				-0.9
67,831	-				+2.2
67,832	+				+1.5
67,832	+				-2.5
67,832	+				+2.4
67,834	-				+1.0
67,834	-				-3.1
67,834	-				+0.8
67,834	-				-0.0
67,834	-				+2.1
67,834	-				-2.9
67,834	-				+0.3
67,834	-				-0.4
67,834	-				+0.6
67,835	+				-0.2
67,835	+				+1.1
67,835	+				+1.0
67,835	+				-0.9
67,835	+				-0.6
67,835	+				+4.3
67,835	+				+0.3
67,835	+				+2.0
67,835	+				+0.9
67,835	+				+1.1
67,835	+				-0.4
67,835	+				-0.1
67,835	+				-3.7
67,836	-				-0.6
67,836	-				+0.7
67,837	+				+0.8
67,837	+				-2.7
67,837	+				-1.9
67,837	+				+0.2
67,837	+				+3.1
67,849	-				+3.5
67,849	-				+1.8
67,850	+				+1.7
67,853	-				-0.4
67,853	-				-1.7
67,853	-				+2.0
67,853	-				+1.9
67,854	+				-2.6
67,854	+				-1.5
67,854	+				+0.6
67,854	+				-2.8
67,857	-				-0.5
67,857	-				-1.1
67,857	-				+2.2
67,858	+				-1.2
67,858	+				-3.5
67,858	+				-1.2
67,858	+				-1.7
67,858	+				-3.3
67,863	-				-2.1
67,863	-				-1.9
67,881	-				+0.4
67,881	-				-1.7
67,882	+				+1.1
67,895	-				+0.3
67,902	+				+1.1
67,960	-		MMJJ_RS00355	0.18	-2.3
68,012	-		MMJJ_RS00355	0.34	+1.1
68,014	-		MMJJ_RS00355	0.34	-2.1
68,014	-		MMJJ_RS00355	0.34	-1.3
68,015	+		MMJJ_RS00355	0.35	+1.1
68,108	+		MMJJ_RS00355	0.62	+0.1
68,170	-		MMJJ_RS00355	0.81	+0.1
68,245	-				+1.4
68,248	-				-1.9
68,248	-				-2.3
68,248	-				-1.4
68,248	-				+3.8
68,252	-				+1.6
68,252	-				-1.1
68,284	+				-2.8
68,288	+				-0.9
68,300	+				+1.3
68,307	+				-4.4
68,307	+				+0.8
68,318	+				-0.3
68,327	-				-0.5
68,334	-				-2.3
68,335	+				+0.1
68,335	+				-0.2
68,335	+				+0.5
68,382	+				-0.3
68,385	-				+0.1
68,385	-				+2.9
68,386	+				-0.9
68,465	-				+2.6
68,465	-				-1.5
68,466	+				-0.5
68,555	-		MMJJ_RS00360	0.13	-1.5
68,618	-		MMJJ_RS00360	0.18	-0.9
68,679	-		MMJJ_RS00360	0.23	+0.1
68,679	-		MMJJ_RS00360	0.23	-0.5
68,983	-		MMJJ_RS00360	0.47	+0.1
69,378	-				+0.1
69,378	-		MMJJ_RS00360	0.79	-1.7
69,519	-		MMJJ_RS00360	0.90	-0.5
70,074	+				+1.1
70,149	-		MMJJ_RS00365	0.62	+1.1
70,150	+		MMJJ_RS00365	0.62	+0.1
70,257	-		MMJJ_RS00365	0.76	+0.1
70,395	+				+1.5
70,411	-				-1.7
70,445	+				-1.9
70,463	-				-1.3
70,463	-				+1.4
70,467	-				+1.4
70,468	+				+3.3
70,472	+				-2.2
70,476	-				-1.3
70,481	+				+1.1
70,481	+				+2.1
70,483	+				-3.7
70,483	+				+3.5
70,625	-				-0.9