Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00275 and MMJJ_RS00280 are separated by 16 nucleotides MMJJ_RS00280 and MMJJ_RS00285 are separated by 5 nucleotides MMJJ_RS00285 and MMJJ_RS00290 are separated by 275 nucleotides
MMJJ_RS00275: MMJJ_RS00275 - coenzyme F420-0:L-glutamate ligase, at 53,331 to 54,077
_RS00275
MMJJ_RS00280: MMJJ_RS00280 - shikimate dehydrogenase, at 54,094 to 54,930
_RS00280
MMJJ_RS00285: MMJJ_RS00285 - UPF0254 family protein, at 54,936 to 55,433
_RS00285
MMJJ_RS00290: MMJJ_RS00290 - CheF family chemotaxis protein, at 55,709 to 56,755
_RS00290
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 53.981 kb on + strand, within MMJJ_RS00275 at 54.006 kb on + strand at 54.108 kb on - strand at 54.130 kb on - strand at 54.131 kb on + strand at 54.298 kb on + strand, within MMJJ_RS00280 at 54.495 kb on - strand, within MMJJ_RS00280 at 54.862 kb on - strand at 54.943 kb on + strand at 54.950 kb on + strand at 54.977 kb on - strand at 54.977 kb on - strand at 54.977 kb on - strand at 54.982 kb on - strand at 54.993 kb on - strand, within MMJJ_RS00285 at 55.018 kb on + strand, within MMJJ_RS00285 at 55.033 kb on + strand, within MMJJ_RS00285 at 55.035 kb on - strand, within MMJJ_RS00285 at 55.035 kb on - strand, within MMJJ_RS00285 at 55.036 kb on + strand, within MMJJ_RS00285 at 55.036 kb on + strand, within MMJJ_RS00285 at 55.067 kb on + strand, within MMJJ_RS00285 at 55.076 kb on + strand, within MMJJ_RS00285 at 55.084 kb on + strand, within MMJJ_RS00285 at 55.086 kb on - strand, within MMJJ_RS00285 at 55.179 kb on - strand, within MMJJ_RS00285 at 55.182 kb on - strand, within MMJJ_RS00285 at 55.183 kb on + strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.185 kb on - strand, within MMJJ_RS00285 at 55.186 kb on + strand, within MMJJ_RS00285 at 55.186 kb on + strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.202 kb on - strand, within MMJJ_RS00285 at 55.205 kb on + strand, within MMJJ_RS00285 at 55.303 kb on + strand, within MMJJ_RS00285 at 55.303 kb on + strand, within MMJJ_RS00285 at 55.306 kb on - strand, within MMJJ_RS00285 at 55.306 kb on - strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.307 kb on + strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.308 kb on - strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand, within MMJJ_RS00285 at 55.309 kb on + strand at 55.309 kb on + strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.330 kb on - strand, within MMJJ_RS00285 at 55.355 kb on - strand, within MMJJ_RS00285 at 55.356 kb on + strand, within MMJJ_RS00285 at 55.377 kb on - strand, within MMJJ_RS00285 at 55.383 kb on + strand, within MMJJ_RS00285 at 55.383 kb on + strand, within MMJJ_RS00285 at 55.434 kb on + strand at 55.436 kb on - strand at 55.446 kb on + strand at 55.466 kb on + strand at 55.482 kb on - strand at 55.485 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.487 kb on - strand at 55.488 kb on + strand at 55.488 kb on + strand at 55.488 kb on + strand at 55.491 kb on + strand at 55.496 kb on + strand at 55.506 kb on + strand at 55.509 kb on - strand at 55.510 kb on + strand at 55.519 kb on - strand at 55.519 kb on - strand at 55.523 kb on + strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.527 kb on - strand at 55.528 kb on + strand at 55.533 kb on - strand at 55.538 kb on - strand at 55.538 kb on - strand at 55.539 kb on + strand at 55.547 kb on - strand at 55.548 kb on + strand at 55.554 kb on + strand at 55.557 kb on - strand at 55.568 kb on - strand at 55.568 kb on - strand at 55.569 kb on + strand at 55.569 kb on + strand at 55.596 kb on - strand at 55.597 kb on + strand at 55.599 kb on + strand at 55.600 kb on - strand at 55.604 kb on - strand at 55.604 kb on - strand at 55.605 kb on + strand at 55.606 kb on - strand at 55.606 kb on - strand at 55.634 kb on - strand at 55.635 kb on + strand at 55.635 kb on + strand at 55.644 kb on - strand at 55.645 kb on + strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.646 kb on - strand at 55.647 kb on + strand at 55.647 kb on + strand at 55.682 kb on + strand at 55.720 kb on - strand at 55.766 kb on - strand at 55.994 kb on + strand, within MMJJ_RS00290 at 55.998 kb on - strand, within MMJJ_RS00290 at 55.998 kb on - strand, within MMJJ_RS00290 at 55.999 kb on + strand, within MMJJ_RS00290 at 55.999 kb on + strand, within MMJJ_RS00290 at 56.025 kb on + strand, within MMJJ_RS00290 at 56.025 kb on + strand, within MMJJ_RS00290 at 56.040 kb on - strand, within MMJJ_RS00290 at 56.062 kb on + strand, within MMJJ_RS00290 at 56.097 kb on - strand, within MMJJ_RS00290 at 56.097 kb on - strand, within MMJJ_RS00290 at 56.098 kb on + strand, within MMJJ_RS00290 at 56.102 kb on - strand, within MMJJ_RS00290 at 56.102 kb on - strand, within MMJJ_RS00290 at 56.103 kb on + strand, within MMJJ_RS00290 at 56.103 kb on + strand, within MMJJ_RS00290 at 56.132 kb on + strand, within MMJJ_RS00290 at 56.242 kb on - strand, within MMJJ_RS00290 at 56.242 kb on - strand, within MMJJ_RS00290 at 56.256 kb on + strand, within MMJJ_RS00290 at 56.262 kb on - strand, within MMJJ_RS00290 at 56.267 kb on + strand, within MMJJ_RS00290 at 56.272 kb on - strand, within MMJJ_RS00290 at 56.272 kb on - strand, within MMJJ_RS00290 at 56.273 kb on + strand, within MMJJ_RS00290 at 56.371 kb on - strand, within MMJJ_RS00290 at 56.372 kb on + strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.397 kb on - strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.398 kb on + strand, within MMJJ_RS00290 at 56.406 kb on - strand, within MMJJ_RS00290 at 56.411 kb on - strand, within MMJJ_RS00290 at 56.412 kb on + strand, within MMJJ_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 53,981 + MMJJ_RS00275 0.87 +0.5 54,006 + +0.1 54,108 - +0.5 54,130 - -1.8 54,131 + +2.6 54,298 + MMJJ_RS00280 0.24 -0.7 54,495 - MMJJ_RS00280 0.48 -0.5 54,862 - -0.5 54,943 + -1.7 54,950 + +0.1 54,977 - -1.5 54,977 - -2.8 54,977 - -3.1 54,982 - -3.4 54,993 - MMJJ_RS00285 0.11 -4.3 55,018 + MMJJ_RS00285 0.16 -1.5 55,033 + MMJJ_RS00285 0.19 -1.9 55,035 - MMJJ_RS00285 0.20 -3.6 55,035 - MMJJ_RS00285 0.20 -1.1 55,036 + MMJJ_RS00285 0.20 +0.4 55,036 + MMJJ_RS00285 0.20 -3.7 55,067 + MMJJ_RS00285 0.26 -0.2 55,076 + MMJJ_RS00285 0.28 -2.9 55,084 + MMJJ_RS00285 0.30 +1.1 55,086 - MMJJ_RS00285 0.30 -1.3 55,179 - MMJJ_RS00285 0.49 +1.4 55,182 - MMJJ_RS00285 0.49 +1.3 55,183 + MMJJ_RS00285 0.50 -2.5 55,185 - MMJJ_RS00285 0.50 -2.1 55,185 - MMJJ_RS00285 0.50 -4.4 55,185 - MMJJ_RS00285 0.50 -1.6 55,186 + MMJJ_RS00285 0.50 -0.9 55,186 + MMJJ_RS00285 0.50 +1.2 55,202 - MMJJ_RS00285 0.53 -1.7 55,202 - MMJJ_RS00285 0.53 -2.9 55,202 - MMJJ_RS00285 0.53 -1.5 55,205 + MMJJ_RS00285 0.54 -2.7 55,303 + MMJJ_RS00285 0.74 -1.3 55,303 + MMJJ_RS00285 0.74 -2.6 55,306 - MMJJ_RS00285 0.74 -4.1 55,306 - MMJJ_RS00285 0.74 -2.1 55,307 + MMJJ_RS00285 0.74 -3.8 55,307 + MMJJ_RS00285 0.74 -1.6 55,307 + MMJJ_RS00285 0.74 -2.0 55,307 + MMJJ_RS00285 0.74 -2.2 55,307 + MMJJ_RS00285 0.74 -1.7 55,307 + MMJJ_RS00285 0.74 -1.5 55,308 - MMJJ_RS00285 0.75 -0.5 55,308 - MMJJ_RS00285 0.75 -3.0 55,308 - MMJJ_RS00285 0.75 -2.7 55,308 - MMJJ_RS00285 0.75 -0.3 55,308 - MMJJ_RS00285 0.75 -2.6 55,308 - MMJJ_RS00285 0.75 -0.5 55,308 - MMJJ_RS00285 0.75 -1.7 55,308 - MMJJ_RS00285 0.75 +0.3 55,308 - MMJJ_RS00285 0.75 -1.1 55,308 - MMJJ_RS00285 0.75 -1.6 55,309 + MMJJ_RS00285 0.75 -1.5 55,309 + MMJJ_RS00285 0.75 -1.5 55,309 + MMJJ_RS00285 0.75 -1.5 55,309 + MMJJ_RS00285 0.75 -3.7 55,309 + MMJJ_RS00285 0.75 -3.1 55,309 + MMJJ_RS00285 0.75 -2.9 55,309 + MMJJ_RS00285 0.75 -0.9 55,309 + MMJJ_RS00285 0.75 -1.4 55,309 + -1.3 55,309 + MMJJ_RS00285 0.75 -1.9 55,330 - MMJJ_RS00285 0.79 -0.9 55,330 - MMJJ_RS00285 0.79 -3.7 55,330 - MMJJ_RS00285 0.79 -1.7 55,355 - MMJJ_RS00285 0.84 -1.9 55,356 + MMJJ_RS00285 0.84 -2.5 55,377 - MMJJ_RS00285 0.89 +1.1 55,383 + MMJJ_RS00285 0.90 -1.1 55,383 + MMJJ_RS00285 0.90 -2.3 55,434 + -2.9 55,436 - -1.0 55,446 + -2.1 55,466 + +0.5 55,482 - +1.9 55,485 - -1.7 55,487 - +1.7 55,487 - -1.3 55,487 - +1.3 55,487 - -3.8 55,488 + +0.7 55,488 + -0.8 55,488 + +0.7 55,491 + +0.6 55,496 + -0.8 55,506 + -2.1 55,509 - +3.5 55,510 + +0.4 55,519 - +0.6 55,519 - +2.3 55,523 + +1.7 55,527 - +2.9 55,527 - -1.9 55,527 - -1.5 55,527 - +3.2 55,528 + +2.5 55,533 - -3.3 55,538 - +0.1 55,538 - +0.5 55,539 + +2.2 55,547 - -0.2 55,548 + +0.7 55,554 + -1.7 55,557 - +1.8 55,568 - +0.0 55,568 - -2.1 55,569 + +1.4 55,569 + +1.9 55,596 - +1.9 55,597 + -2.6 55,599 + +0.8 55,600 - +3.0 55,604 - +1.6 55,604 - -2.4 55,605 + -1.3 55,606 - -2.6 55,606 - +0.8 55,634 - +1.2 55,635 + +1.6 55,635 + +1.1 55,644 - +1.2 55,645 + +2.6 55,646 - +3.3 55,646 - +1.3 55,646 - -1.5 55,646 - +1.9 55,647 + +4.5 55,647 + -0.1 55,682 + +1.1 55,720 - -2.6 55,766 - -3.5 55,994 + MMJJ_RS00290 0.27 +0.1 55,998 - MMJJ_RS00290 0.28 -0.9 55,998 - MMJJ_RS00290 0.28 -1.8 55,999 + MMJJ_RS00290 0.28 -3.5 55,999 + MMJJ_RS00290 0.28 +0.2 56,025 + MMJJ_RS00290 0.30 +3.1 56,025 + MMJJ_RS00290 0.30 -3.4 56,040 - MMJJ_RS00290 0.32 -3.6 56,062 + MMJJ_RS00290 0.34 -1.6 56,097 - MMJJ_RS00290 0.37 -2.4 56,097 - MMJJ_RS00290 0.37 +0.8 56,098 + MMJJ_RS00290 0.37 +2.4 56,102 - MMJJ_RS00290 0.38 -0.4 56,102 - MMJJ_RS00290 0.38 +0.7 56,103 + MMJJ_RS00290 0.38 -3.5 56,103 + MMJJ_RS00290 0.38 -0.7 56,132 + MMJJ_RS00290 0.40 +3.3 56,242 - MMJJ_RS00290 0.51 +2.5 56,242 - MMJJ_RS00290 0.51 +1.1 56,256 + MMJJ_RS00290 0.52 -3.5 56,262 - MMJJ_RS00290 0.53 +2.9 56,267 + MMJJ_RS00290 0.53 -3.1 56,272 - MMJJ_RS00290 0.54 +1.2 56,272 - MMJJ_RS00290 0.54 -3.8 56,273 + MMJJ_RS00290 0.54 +2.0 56,371 - MMJJ_RS00290 0.63 -2.9 56,372 + MMJJ_RS00290 0.63 +0.1 56,397 - MMJJ_RS00290 0.66 -1.1 56,397 - MMJJ_RS00290 0.66 -1.1 56,397 - MMJJ_RS00290 0.66 -0.2 56,398 + MMJJ_RS00290 0.66 -2.4 56,398 + MMJJ_RS00290 0.66 +1.1 56,398 + MMJJ_RS00290 0.66 +2.0 56,406 - MMJJ_RS00290 0.67 +1.7 56,411 - MMJJ_RS00290 0.67 -0.7 56,412 + MMJJ_RS00290 0.67 +3.4
Or see this region's nucleotide sequence