Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00260 and MMJJ_RS00265 are separated by 22 nucleotides MMJJ_RS00265 and MMJJ_RS00270 are separated by 15 nucleotides MMJJ_RS00270 and MMJJ_RS00275 are separated by 53 nucleotides MMJJ_RS00275 and MMJJ_RS00280 are separated by 16 nucleotides
MMJJ_RS00260: MMJJ_RS00260 - energy-converting hydrogenase B subunit EhbP, at 51,501 to 51,788
_RS00260
MMJJ_RS00265: MMJJ_RS00265 - TIGR02253 family HAD-type hydrolase, at 51,811 to 52,488
_RS00265
MMJJ_RS00270: MMJJ_RS00270 - adenosylcobinamide-GDP ribazoletransferase, at 52,504 to 53,277
_RS00270
MMJJ_RS00275: MMJJ_RS00275 - coenzyme F420-0:L-glutamate ligase, at 53,331 to 54,077
_RS00275
MMJJ_RS00280: MMJJ_RS00280 - shikimate dehydrogenase, at 54,094 to 54,930
_RS00280
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 51.576 kb on + strand, within MMJJ_RS00260 at 51.589 kb on - strand, within MMJJ_RS00260 at 51.791 kb on - strand at 51.791 kb on - strand at 51.794 kb on + strand at 51.794 kb on + strand at 51.794 kb on + strand at 51.794 kb on + strand at 51.817 kb on + strand at 51.894 kb on + strand, within MMJJ_RS00265 at 51.925 kb on + strand, within MMJJ_RS00265 at 51.947 kb on - strand, within MMJJ_RS00265 at 52.027 kb on - strand, within MMJJ_RS00265 at 52.059 kb on - strand, within MMJJ_RS00265 at 52.105 kb on + strand, within MMJJ_RS00265 at 52.113 kb on - strand, within MMJJ_RS00265 at 52.118 kb on - strand, within MMJJ_RS00265 at 52.171 kb on + strand, within MMJJ_RS00265 at 52.230 kb on - strand, within MMJJ_RS00265 at 52.231 kb on + strand, within MMJJ_RS00265 at 52.231 kb on + strand, within MMJJ_RS00265 at 52.233 kb on + strand, within MMJJ_RS00265 at 52.283 kb on + strand, within MMJJ_RS00265 at 52.305 kb on + strand, within MMJJ_RS00265 at 52.427 kb on - strand at 52.428 kb on + strand at 52.452 kb on + strand at 52.482 kb on - strand at 52.654 kb on + strand, within MMJJ_RS00270 at 52.655 kb on - strand, within MMJJ_RS00270 at 52.719 kb on + strand, within MMJJ_RS00270 at 52.723 kb on + strand, within MMJJ_RS00270 at 52.810 kb on + strand, within MMJJ_RS00270 at 52.810 kb on + strand, within MMJJ_RS00270 at 52.928 kb on + strand, within MMJJ_RS00270 at 52.934 kb on - strand, within MMJJ_RS00270 at 53.082 kb on + strand at 53.257 kb on - strand at 53.269 kb on + strand at 53.279 kb on - strand at 53.300 kb on + strand at 53.305 kb on - strand at 53.309 kb on - strand at 53.561 kb on - strand, within MMJJ_RS00275 at 53.667 kb on + strand, within MMJJ_RS00275 at 53.838 kb on - strand, within MMJJ_RS00275 at 53.839 kb on + strand, within MMJJ_RS00275 at 53.981 kb on + strand, within MMJJ_RS00275 at 54.006 kb on + strand at 54.108 kb on - strand at 54.130 kb on - strand at 54.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 51,576 + MMJJ_RS00260 0.26 -1.5 51,589 - MMJJ_RS00260 0.31 -2.1 51,791 - +0.8 51,791 - -0.1 51,794 + -2.1 51,794 + +0.4 51,794 + -0.5 51,794 + -1.6 51,817 + -2.5 51,894 + MMJJ_RS00265 0.12 -0.5 51,925 + MMJJ_RS00265 0.17 -0.5 51,947 - MMJJ_RS00265 0.20 -3.9 52,027 - MMJJ_RS00265 0.32 -0.5 52,059 - MMJJ_RS00265 0.37 -2.1 52,105 + MMJJ_RS00265 0.43 +0.1 52,113 - MMJJ_RS00265 0.45 -1.9 52,118 - MMJJ_RS00265 0.45 -1.7 52,171 + MMJJ_RS00265 0.53 -0.5 52,230 - MMJJ_RS00265 0.62 +0.1 52,231 + MMJJ_RS00265 0.62 -0.2 52,231 + MMJJ_RS00265 0.62 -0.5 52,233 + MMJJ_RS00265 0.62 -2.8 52,283 + MMJJ_RS00265 0.70 +1.8 52,305 + MMJJ_RS00265 0.73 -0.9 52,427 - -1.7 52,428 + +0.1 52,452 + -1.3 52,482 - +0.1 52,654 + MMJJ_RS00270 0.19 +0.1 52,655 - MMJJ_RS00270 0.20 +1.1 52,719 + MMJJ_RS00270 0.28 -1.5 52,723 + MMJJ_RS00270 0.28 -1.9 52,810 + MMJJ_RS00270 0.40 +0.1 52,810 + MMJJ_RS00270 0.40 -1.3 52,928 + MMJJ_RS00270 0.55 -1.3 52,934 - MMJJ_RS00270 0.56 +0.1 53,082 + +1.1 53,257 - -0.4 53,269 + -0.2 53,279 - -2.1 53,300 + -0.7 53,305 - -2.4 53,309 - -0.1 53,561 - MMJJ_RS00275 0.31 +1.1 53,667 + MMJJ_RS00275 0.45 -0.9 53,838 - MMJJ_RS00275 0.68 -1.3 53,839 + MMJJ_RS00275 0.68 +1.1 53,981 + MMJJ_RS00275 0.87 +0.5 54,006 + +0.1 54,108 - +0.5 54,130 - -1.8 54,131 + +2.6
Or see this region's nucleotide sequence