Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00195 and MMJJ_RS00200 are separated by 142 nucleotides MMJJ_RS00200 and MMJJ_RS00205 are separated by 92 nucleotides MMJJ_RS00205 and MMJJ_RS00210 are separated by 10 nucleotides
MMJJ_RS00195: MMJJ_RS00195 - precorrin-3B C(17)-methyltransferase, at 37,263 to 38,015
_RS00195
MMJJ_RS00200: MMJJ_RS00200 - translation initiation factor IF-5A, at 38,158 to 38,553
_RS00200
MMJJ_RS00205: MMJJ_RS00205 - adenosylcobinamide-phosphate synthase CbiB, at 38,646 to 39,566
_RS00205
MMJJ_RS00210: MMJJ_RS00210 - DUF530 family protein, at 39,577 to 41,007
_RS00210
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 37.809 kb on + strand at 37.908 kb on + strand, within MMJJ_RS00195 at 37.995 kb on - strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.997 kb on - strand at 37.997 kb on - strand at 37.997 kb on - strand at 37.997 kb on - strand at 37.997 kb on - strand at 37.998 kb on + strand at 37.998 kb on + strand at 37.998 kb on + strand at 38.008 kb on + strand at 38.024 kb on - strand at 38.040 kb on - strand at 38.045 kb on + strand at 38.045 kb on + strand at 38.045 kb on + strand at 38.045 kb on + strand at 38.045 kb on + strand at 38.046 kb on - strand at 38.046 kb on - strand at 38.046 kb on - strand at 38.047 kb on + strand at 38.047 kb on + strand at 38.047 kb on + strand at 38.047 kb on + strand at 38.047 kb on + strand at 38.047 kb on + strand at 38.058 kb on + strand at 38.090 kb on - strand at 38.090 kb on - strand at 38.123 kb on + strand at 38.136 kb on + strand at 38.304 kb on - strand, within MMJJ_RS00200 at 38.334 kb on + strand, within MMJJ_RS00200 at 38.551 kb on - strand at 38.580 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.755 kb on - strand, within MMJJ_RS00205 at 38.758 kb on - strand, within MMJJ_RS00205 at 38.780 kb on - strand, within MMJJ_RS00205 at 38.784 kb on - strand, within MMJJ_RS00205 at 38.903 kb on - strand, within MMJJ_RS00205 at 38.983 kb on + strand, within MMJJ_RS00205 at 39.090 kb on + strand, within MMJJ_RS00205 at 39.153 kb on - strand, within MMJJ_RS00205 at 39.165 kb on + strand, within MMJJ_RS00205 at 39.175 kb on + strand, within MMJJ_RS00205 at 39.175 kb on + strand, within MMJJ_RS00205 at 39.175 kb on + strand, within MMJJ_RS00205 at 39.180 kb on + strand, within MMJJ_RS00205 at 39.180 kb on + strand, within MMJJ_RS00205 at 39.309 kb on + strand, within MMJJ_RS00205 at 39.777 kb on + strand, within MMJJ_RS00210 at 40.416 kb on - strand at 40.450 kb on - strand at 40.490 kb on + strand, within MMJJ_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 37,809 + +0.1 37,908 + MMJJ_RS00195 0.86 -1.8 37,995 - -0.5 37,996 + -0.5 37,996 + +1.1 37,997 - +2.2 37,997 - -3.0 37,997 - +0.9 37,997 - -3.0 37,997 - +4.2 37,998 + +1.1 37,998 + -0.6 37,998 + -0.5 38,008 + +2.1 38,024 - +1.1 38,040 - +0.8 38,045 + +0.5 38,045 + -0.7 38,045 + +3.2 38,045 + -1.5 38,045 + -3.0 38,046 - -1.5 38,046 - -0.9 38,046 - +4.5 38,047 + +1.1 38,047 + +0.7 38,047 + +0.1 38,047 + -1.5 38,047 + -0.1 38,047 + +0.4 38,058 + -1.5 38,090 - -0.7 38,090 - -2.3 38,123 + -0.7 38,136 + -2.1 38,304 - MMJJ_RS00200 0.37 -0.5 38,334 + MMJJ_RS00200 0.44 -0.7 38,551 - -2.1 38,580 - +0.1 38,665 - +0.1 38,665 - +1.5 38,755 - MMJJ_RS00205 0.12 +0.6 38,758 - MMJJ_RS00205 0.12 -2.1 38,780 - MMJJ_RS00205 0.15 -0.5 38,784 - MMJJ_RS00205 0.15 -0.3 38,903 - MMJJ_RS00205 0.28 +0.1 38,983 + MMJJ_RS00205 0.37 -1.9 39,090 + MMJJ_RS00205 0.48 +1.1 39,153 - MMJJ_RS00205 0.55 +1.1 39,165 + MMJJ_RS00205 0.56 -0.9 39,175 + MMJJ_RS00205 0.57 +1.1 39,175 + MMJJ_RS00205 0.57 -2.3 39,175 + MMJJ_RS00205 0.57 -0.5 39,180 + MMJJ_RS00205 0.58 +0.1 39,180 + MMJJ_RS00205 0.58 -1.2 39,309 + MMJJ_RS00205 0.72 -2.9 39,777 + MMJJ_RS00210 0.14 -0.3 40,416 - -0.5 40,450 - -0.5 40,490 + MMJJ_RS00210 0.64 -1.7
Or see this region's nucleotide sequence