Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00180

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
31,562	-				+3.7
31,562	-				-1.5
31,566	-				-2.7
31,566	-				-2.6
31,567	+				-1.9
31,567	+				+1.3
31,568	-				+0.8
31,569	+				+1.6
31,569	+				+2.1
31,569	+				-1.4
31,569	+				-1.3
31,593	-		MMJJ_RS00170	0.16	-0.2
31,594	+		MMJJ_RS00170	0.16	-3.4
31,594	+		MMJJ_RS00170	0.16	-1.6
31,616	-		MMJJ_RS00170	0.23	-1.3
31,616	-		MMJJ_RS00170	0.23	-0.7
31,620	-		MMJJ_RS00170	0.24	-2.4
31,621	+		MMJJ_RS00170	0.24	+1.6
31,722	-		MMJJ_RS00170	0.53	-0.5
31,722	-		MMJJ_RS00170	0.53	-0.9
31,722	-		MMJJ_RS00170	0.53	+1.2
31,723	+		MMJJ_RS00170	0.53	+0.4
31,723	+		MMJJ_RS00170	0.53	+0.9
31,723	+		MMJJ_RS00170	0.53	-0.6
31,725	+		MMJJ_RS00170	0.54	-2.2
31,734	+		MMJJ_RS00170	0.57	+2.0
31,768	-		MMJJ_RS00170	0.66	-1.9
31,773	-		MMJJ_RS00170	0.68	+0.3
31,850	-				-3.3
31,853	-				-2.4
31,890	+				-0.4
31,962	-				+0.0
31,971	-		MMJJ_RS00175	0.10	+1.8
31,972	+		MMJJ_RS00175	0.10	-2.6
31,972	+		MMJJ_RS00175	0.10	+0.9
31,984	+		MMJJ_RS00175	0.12	-2.7
31,988	-		MMJJ_RS00175	0.13	-0.5
31,988	-		MMJJ_RS00175	0.13	-3.9
31,989	+		MMJJ_RS00175	0.13	+0.4
31,990	-		MMJJ_RS00175	0.13	-1.3
31,991	+		MMJJ_RS00175	0.13	+0.2
31,991	+		MMJJ_RS00175	0.13	+0.5
32,005	-		MMJJ_RS00175	0.15	+0.8
32,045	+		MMJJ_RS00175	0.22	-0.7
32,129	-		MMJJ_RS00175	0.34	+4.4
32,248	-		MMJJ_RS00175	0.53	+0.1
32,249	+		MMJJ_RS00175	0.53	-1.8
32,256	-		MMJJ_RS00175	0.54	+4.5
32,272	+		MMJJ_RS00175	0.56	+0.1
32,314	-		MMJJ_RS00175	0.63	+0.5
32,314	-		MMJJ_RS00175	0.63	+0.9
32,315	+		MMJJ_RS00175	0.63	+3.2
32,316	-		MMJJ_RS00175	0.63	-0.9
32,316	-		MMJJ_RS00175	0.63	-1.5
32,317	+		MMJJ_RS00175	0.63	+0.7
32,375	-		MMJJ_RS00175	0.72	+1.6
32,402	-		MMJJ_RS00175	0.76	+2.3
32,430	-		MMJJ_RS00175	0.80	+1.1
32,431	+		MMJJ_RS00175	0.81	-0.8
32,466	-		MMJJ_RS00175	0.86	+2.9
32,482	+		MMJJ_RS00175	0.88	+3.7
32,495	+				+1.6
32,502	+				+0.9
32,502	+				+1.9
32,503	-				+1.3
32,503	-				-0.7
32,504	+				-0.7
32,504	+				+0.6
32,504	+				-3.3
32,504	+				-1.8
32,515	-				-1.7
32,516	+				+1.6
32,518	+				+0.6
32,545	+				+2.8
32,545	+				-0.8
32,560	-				-0.1
32,595	+				-2.1
32,636	-				+0.2
32,636	-				-1.4
32,729	-				+0.6
32,748	-				-1.4
32,766	+				-2.6
32,819	-		MMJJ_RS00180	0.11	+0.5
32,820	+		MMJJ_RS00180	0.11	+2.0
32,822	+		MMJJ_RS00180	0.11	-0.7
32,896	-		MMJJ_RS00180	0.14	-0.3
32,897	+		MMJJ_RS00180	0.14	+2.7
32,897	+		MMJJ_RS00180	0.14	-0.7
32,897	+		MMJJ_RS00180	0.14	-1.1
32,900	-		MMJJ_RS00180	0.14	-1.1
32,901	+		MMJJ_RS00180	0.14	-1.4
33,041	-		MMJJ_RS00180	0.19	-0.9
33,074	-		MMJJ_RS00180	0.21	+1.4
33,123	-		MMJJ_RS00180	0.23	-2.1
33,159	+		MMJJ_RS00180	0.24	+2.6
33,175	-		MMJJ_RS00180	0.25	+1.1
33,213	+		MMJJ_RS00180	0.26	-0.5
33,243	+		MMJJ_RS00180	0.28	-1.7
33,256	+		MMJJ_RS00180	0.28	-0.9
33,262	+		MMJJ_RS00180	0.28	+3.8
33,270	+		MMJJ_RS00180	0.29	+4.1
33,270	+		MMJJ_RS00180	0.29	+1.4
33,734	+		MMJJ_RS00180	0.48	+0.1
33,737	+		MMJJ_RS00180	0.48	+0.1
33,739	-		MMJJ_RS00180	0.48	-2.7
33,740	+		MMJJ_RS00180	0.48	-1.3
34,006	-		MMJJ_RS00180	0.59	+1.1
34,058	+		MMJJ_RS00180	0.61	-2.7
34,058	+		MMJJ_RS00180	0.61	-1.5
34,780	-		MMJJ_RS00180	0.90	-0.5
34,874	+				-2.1
34,904	-				+1.1
34,904	-				+1.1
34,923	-				+1.1
35,050	+				+3.7
35,055	-				+0.6
35,056	+				+0.8
35,096	+				-0.5
35,588	+		MMJJ_RS00185	0.59	-0.9
36,008	-				-0.5
36,018	-				+0.1
36,023	+				-0.4
36,023	+				+2.2