Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00155 and MMJJ_RS00160 are separated by 340 nucleotides MMJJ_RS00160 and MMJJ_RS00165 are separated by 85 nucleotides
MMJJ_RS00155: MMJJ_RS00155 - DUF2193 domain-containing protein, at 27,685 to 29,184
_RS00155
MMJJ_RS00160: MMJJ_RS00160 - hypothetical protein, at 29,525 to 30,532
_RS00160
MMJJ_RS00165: MMJJ_RS00165 - F420-dependent thioredoxin reductase, at 30,618 to 31,520
_RS00165
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 28.545 kb on + strand, within MMJJ_RS00155 at 28.575 kb on - strand, within MMJJ_RS00155 at 28.637 kb on - strand, within MMJJ_RS00155 at 28.703 kb on + strand, within MMJJ_RS00155 at 28.816 kb on - strand, within MMJJ_RS00155 at 28.816 kb on - strand, within MMJJ_RS00155 at 28.817 kb on + strand, within MMJJ_RS00155 at 28.889 kb on - strand, within MMJJ_RS00155 at 28.890 kb on + strand, within MMJJ_RS00155 at 28.894 kb on - strand, within MMJJ_RS00155 at 28.894 kb on - strand, within MMJJ_RS00155 at 28.895 kb on + strand, within MMJJ_RS00155 at 28.952 kb on + strand, within MMJJ_RS00155 at 28.952 kb on + strand, within MMJJ_RS00155 at 28.962 kb on - strand, within MMJJ_RS00155 at 28.962 kb on - strand, within MMJJ_RS00155 at 29.005 kb on + strand, within MMJJ_RS00155 at 29.065 kb on - strand at 29.065 kb on - strand at 29.066 kb on + strand at 29.066 kb on + strand at 29.126 kb on + strand at 29.213 kb on + strand at 29.265 kb on + strand at 29.268 kb on - strand at 29.272 kb on + strand at 29.277 kb on - strand at 29.278 kb on + strand at 29.280 kb on + strand at 29.280 kb on + strand at 29.280 kb on + strand at 29.285 kb on - strand at 29.286 kb on + strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.293 kb on - strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.294 kb on + strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.296 kb on - strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.297 kb on + strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.298 kb on - strand at 29.299 kb on + strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.301 kb on - strand at 29.302 kb on + strand at 29.302 kb on + strand at 29.302 kb on + strand at 29.303 kb on - strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.304 kb on + strand at 29.318 kb on - strand at 29.350 kb on + strand at 29.405 kb on + strand at 29.406 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.408 kb on - strand at 29.409 kb on + strand at 29.409 kb on + strand at 29.410 kb on - strand at 29.410 kb on - strand at 29.410 kb on - strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.413 kb on - strand at 29.413 kb on - strand at 29.414 kb on + strand at 29.466 kb on - strand at 29.511 kb on + strand at 29.521 kb on - strand at 29.522 kb on + strand at 29.549 kb on + strand at 29.556 kb on - strand at 29.557 kb on + strand at 29.558 kb on - strand at 29.559 kb on + strand at 29.563 kb on - strand at 29.564 kb on + strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.569 kb on - strand at 29.570 kb on + strand at 29.570 kb on + strand at 29.570 kb on + strand at 29.574 kb on + strand at 29.583 kb on + strand at 29.593 kb on - strand at 29.607 kb on + strand at 29.623 kb on - strand at 29.673 kb on - strand, within MMJJ_RS00160 at 29.696 kb on + strand, within MMJJ_RS00160 at 29.702 kb on + strand, within MMJJ_RS00160 at 29.702 kb on + strand, within MMJJ_RS00160 at 29.718 kb on - strand, within MMJJ_RS00160 at 29.718 kb on - strand, within MMJJ_RS00160 at 29.742 kb on - strand, within MMJJ_RS00160 at 29.747 kb on - strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.748 kb on + strand, within MMJJ_RS00160 at 29.749 kb on - strand, within MMJJ_RS00160 at 29.750 kb on + strand, within MMJJ_RS00160 at 29.755 kb on - strand, within MMJJ_RS00160 at 29.755 kb on - strand, within MMJJ_RS00160 at 29.773 kb on + strand, within MMJJ_RS00160 at 29.808 kb on + strand, within MMJJ_RS00160 at 29.851 kb on - strand, within MMJJ_RS00160 at 29.855 kb on + strand, within MMJJ_RS00160 at 29.873 kb on - strand, within MMJJ_RS00160 at 29.883 kb on - strand, within MMJJ_RS00160 at 29.883 kb on - strand, within MMJJ_RS00160 at 29.893 kb on - strand, within MMJJ_RS00160 at 29.904 kb on - strand, within MMJJ_RS00160 at 29.955 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.989 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.991 kb on - strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.992 kb on + strand, within MMJJ_RS00160 at 29.996 kb on - strand, within MMJJ_RS00160 at 29.996 kb on - strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 29.997 kb on + strand, within MMJJ_RS00160 at 30.003 kb on - strand, within MMJJ_RS00160 at 30.003 kb on - strand, within MMJJ_RS00160 at 30.056 kb on + strand, within MMJJ_RS00160 at 30.069 kb on - strand, within MMJJ_RS00160 at 30.069 kb on - strand, within MMJJ_RS00160 at 30.070 kb on + strand, within MMJJ_RS00160 at 30.107 kb on + strand, within MMJJ_RS00160 at 30.130 kb on - strand, within MMJJ_RS00160 at 30.131 kb on + strand, within MMJJ_RS00160 at 30.172 kb on + strand, within MMJJ_RS00160 at 30.193 kb on + strand, within MMJJ_RS00160 at 30.211 kb on - strand, within MMJJ_RS00160 at 30.325 kb on - strand, within MMJJ_RS00160 at 30.329 kb on - strand, within MMJJ_RS00160 at 30.333 kb on - strand, within MMJJ_RS00160 at 30.395 kb on - strand, within MMJJ_RS00160 at 30.410 kb on - strand, within MMJJ_RS00160 at 30.410 kb on - strand, within MMJJ_RS00160 at 30.411 kb on + strand, within MMJJ_RS00160 at 30.411 kb on + strand, within MMJJ_RS00160 at 30.415 kb on - strand, within MMJJ_RS00160 at 30.459 kb on - strand at 30.459 kb on - strand at 30.523 kb on - strand at 30.531 kb on + strand at 30.549 kb on - strand at 30.554 kb on + strand at 30.554 kb on + strand at 30.554 kb on + strand at 30.561 kb on - strand at 30.566 kb on - strand at 30.566 kb on - strand at 30.566 kb on - strand at 30.571 kb on - strand at 30.571 kb on - strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.574 kb on + strand at 30.592 kb on - strand at 30.622 kb on - strand at 30.623 kb on + strand at 30.623 kb on + strand at 30.624 kb on - strand at 30.636 kb on + strand at 30.638 kb on - strand at 30.869 kb on - strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.870 kb on + strand, within MMJJ_RS00165 at 30.885 kb on - strand, within MMJJ_RS00165 at 30.887 kb on - strand, within MMJJ_RS00165 at 30.912 kb on - strand, within MMJJ_RS00165 at 30.913 kb on + strand, within MMJJ_RS00165 at 30.932 kb on + strand, within MMJJ_RS00165 at 30.947 kb on - strand, within MMJJ_RS00165 at 30.947 kb on - strand, within MMJJ_RS00165 at 30.948 kb on + strand, within MMJJ_RS00165 at 30.948 kb on + strand, within MMJJ_RS00165 at 30.951 kb on - strand, within MMJJ_RS00165 at 30.967 kb on - strand, within MMJJ_RS00165 at 30.968 kb on + strand, within MMJJ_RS00165 at 31.002 kb on - strand, within MMJJ_RS00165 at 31.003 kb on + strand, within MMJJ_RS00165 at 31.003 kb on + strand, within MMJJ_RS00165 at 31.064 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.086 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.088 kb on - strand, within MMJJ_RS00165 at 31.089 kb on + strand, within MMJJ_RS00165 at 31.093 kb on - strand, within MMJJ_RS00165 at 31.094 kb on + strand, within MMJJ_RS00165 at 31.100 kb on - strand, within MMJJ_RS00165 at 31.114 kb on - strand at 31.120 kb on - strand, within MMJJ_RS00165 at 31.125 kb on + strand, within MMJJ_RS00165 at 31.142 kb on + strand, within MMJJ_RS00165 at 31.180 kb on - strand, within MMJJ_RS00165 at 31.198 kb on - strand, within MMJJ_RS00165 at 31.198 kb on - strand, within MMJJ_RS00165 at 31.253 kb on - strand, within MMJJ_RS00165 at 31.284 kb on + strand, within MMJJ_RS00165 at 31.300 kb on - strand, within MMJJ_RS00165 at 31.304 kb on - strand, within MMJJ_RS00165 at 31.306 kb on - strand, within MMJJ_RS00165 at 31.404 kb on + strand, within MMJJ_RS00165 at 31.481 kb on - strand at 31.481 kb on - strand at 31.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 28,545 + MMJJ_RS00155 0.57 +1.6 28,575 - MMJJ_RS00155 0.59 +0.8 28,637 - MMJJ_RS00155 0.63 +2.4 28,703 + MMJJ_RS00155 0.68 +0.3 28,816 - MMJJ_RS00155 0.75 -3.2 28,816 - MMJJ_RS00155 0.75 -1.7 28,817 + MMJJ_RS00155 0.75 -1.1 28,889 - MMJJ_RS00155 0.80 -1.3 28,890 + MMJJ_RS00155 0.80 -2.1 28,894 - MMJJ_RS00155 0.81 +1.2 28,894 - MMJJ_RS00155 0.81 -3.3 28,895 + MMJJ_RS00155 0.81 -0.6 28,952 + MMJJ_RS00155 0.84 -0.9 28,952 + MMJJ_RS00155 0.84 -2.4 28,962 - MMJJ_RS00155 0.85 -1.7 28,962 - MMJJ_RS00155 0.85 -0.9 29,005 + MMJJ_RS00155 0.88 -1.8 29,065 - -0.8 29,065 - -2.7 29,066 + -1.3 29,066 + +0.9 29,126 + -0.9 29,213 + -3.5 29,265 + -2.1 29,268 - +0.9 29,272 + -3.0 29,277 - +0.7 29,278 + -1.9 29,280 + +2.4 29,280 + +0.2 29,280 + -2.8 29,285 - -1.5 29,286 + +0.3 29,293 - -2.0 29,293 - -2.8 29,293 - -2.3 29,293 - -0.3 29,294 + -0.7 29,294 + +1.1 29,294 + +2.6 29,294 + +1.2 29,294 + +1.4 29,294 + -2.8 29,294 + -2.5 29,294 + -1.3 29,294 + -2.0 29,296 - -0.4 29,296 - +2.8 29,296 - -2.5 29,296 - -2.7 29,296 - -1.9 29,297 + -0.1 29,297 + +2.3 29,297 + +0.1 29,297 + -3.3 29,297 + -1.5 29,297 + +1.6 29,297 + +0.4 29,297 + -1.3 29,298 - -2.4 29,298 - +2.1 29,298 - +1.3 29,298 - +3.1 29,299 + -2.2 29,301 - -0.4 29,301 - -0.7 29,301 - -3.6 29,301 - +0.7 29,302 + -0.1 29,302 + -2.6 29,302 + -1.5 29,303 - +2.4 29,304 + +2.8 29,304 + -2.8 29,304 + -1.9 29,304 + +3.5 29,318 - -0.5 29,350 + -3.4 29,405 + -2.3 29,406 - +4.0 29,408 - -0.9 29,408 - +1.5 29,408 - -1.5 29,408 - -0.9 29,408 - -2.4 29,408 - +0.1 29,409 + -1.7 29,409 + -3.3 29,410 - +0.3 29,410 - -0.5 29,410 - -1.6 29,411 + +0.8 29,411 + +0.2 29,411 + +1.0 29,411 + +1.6 29,413 - +1.3 29,413 - +0.6 29,414 + +0.3 29,466 - -2.8 29,511 + -3.3 29,521 - +1.1 29,522 + +1.7 29,549 + +1.4 29,556 - +0.1 29,557 + -0.2 29,558 - -3.4 29,559 + +1.3 29,563 - -0.5 29,564 + +1.2 29,569 - -2.8 29,569 - +2.1 29,569 - +0.0 29,569 - -1.7 29,569 - -2.7 29,570 + +0.9 29,570 + -1.4 29,570 + -0.9 29,574 + +1.0 29,583 + -1.4 29,593 - -1.3 29,607 + -0.9 29,623 - +1.2 29,673 - MMJJ_RS00160 0.15 +1.5 29,696 + MMJJ_RS00160 0.17 +2.3 29,702 + MMJJ_RS00160 0.18 -0.3 29,702 + MMJJ_RS00160 0.18 +0.2 29,718 - MMJJ_RS00160 0.19 -0.3 29,718 - MMJJ_RS00160 0.19 +1.9 29,742 - MMJJ_RS00160 0.22 +0.6 29,747 - MMJJ_RS00160 0.22 +3.1 29,748 + MMJJ_RS00160 0.22 +1.2 29,748 + MMJJ_RS00160 0.22 +2.4 29,748 + MMJJ_RS00160 0.22 +0.9 29,749 - MMJJ_RS00160 0.22 -0.8 29,750 + MMJJ_RS00160 0.22 +1.6 29,755 - MMJJ_RS00160 0.23 +1.3 29,755 - MMJJ_RS00160 0.23 +0.7 29,773 + MMJJ_RS00160 0.25 +1.9 29,808 + MMJJ_RS00160 0.28 +1.0 29,851 - MMJJ_RS00160 0.32 -1.5 29,855 + MMJJ_RS00160 0.33 +1.2 29,873 - MMJJ_RS00160 0.35 -1.5 29,883 - MMJJ_RS00160 0.36 +0.8 29,883 - MMJJ_RS00160 0.36 +2.0 29,893 - MMJJ_RS00160 0.37 -0.4 29,904 - MMJJ_RS00160 0.38 -3.3 29,955 - MMJJ_RS00160 0.43 +0.1 29,989 - MMJJ_RS00160 0.46 -1.1 29,989 - MMJJ_RS00160 0.46 -0.5 29,989 - MMJJ_RS00160 0.46 -1.6 29,989 - MMJJ_RS00160 0.46 -2.9 29,989 - MMJJ_RS00160 0.46 -2.4 29,991 - MMJJ_RS00160 0.46 +0.4 29,991 - MMJJ_RS00160 0.46 -2.1 29,991 - MMJJ_RS00160 0.46 -1.1 29,991 - MMJJ_RS00160 0.46 -1.8 29,991 - MMJJ_RS00160 0.46 +0.5 29,992 + MMJJ_RS00160 0.46 +2.0 29,992 + MMJJ_RS00160 0.46 +0.3 29,992 + MMJJ_RS00160 0.46 -2.2 29,992 + MMJJ_RS00160 0.46 -1.8 29,992 + MMJJ_RS00160 0.46 +1.5 29,992 + MMJJ_RS00160 0.46 +0.2 29,996 - MMJJ_RS00160 0.47 -2.0 29,996 - MMJJ_RS00160 0.47 +0.6 29,997 + MMJJ_RS00160 0.47 +1.1 29,997 + MMJJ_RS00160 0.47 -0.9 29,997 + MMJJ_RS00160 0.47 -0.9 29,997 + MMJJ_RS00160 0.47 -1.1 30,003 - MMJJ_RS00160 0.47 +2.0 30,003 - MMJJ_RS00160 0.47 -2.3 30,056 + MMJJ_RS00160 0.53 -1.6 30,069 - MMJJ_RS00160 0.54 -1.1 30,069 - MMJJ_RS00160 0.54 -1.1 30,070 + MMJJ_RS00160 0.54 -1.5 30,107 + MMJJ_RS00160 0.58 +1.4 30,130 - MMJJ_RS00160 0.60 -2.3 30,131 + MMJJ_RS00160 0.60 +2.0 30,172 + MMJJ_RS00160 0.64 -0.4 30,193 + MMJJ_RS00160 0.66 -2.3 30,211 - MMJJ_RS00160 0.68 -1.8 30,325 - MMJJ_RS00160 0.79 +1.1 30,329 - MMJJ_RS00160 0.80 +1.6 30,333 - MMJJ_RS00160 0.80 -1.6 30,395 - MMJJ_RS00160 0.86 -0.3 30,410 - MMJJ_RS00160 0.88 +1.6 30,410 - MMJJ_RS00160 0.88 +0.4 30,411 + MMJJ_RS00160 0.88 +1.0 30,411 + MMJJ_RS00160 0.88 -0.8 30,415 - MMJJ_RS00160 0.88 +1.3 30,459 - +2.9 30,459 - +1.6 30,523 - -2.8 30,531 + -0.9 30,549 - +3.3 30,554 + +2.0 30,554 + -0.9 30,554 + -0.4 30,561 - +2.8 30,566 - -2.3 30,566 - +1.5 30,566 - -1.3 30,571 - -2.8 30,571 - -1.4 30,572 + +0.3 30,572 + -0.2 30,574 + +0.0 30,592 - -3.5 30,622 - -1.6 30,623 + -1.7 30,623 + +2.0 30,624 - +1.3 30,636 + -1.1 30,638 - +0.1 30,869 - MMJJ_RS00165 0.28 -2.1 30,870 + MMJJ_RS00165 0.28 -1.9 30,870 + MMJJ_RS00165 0.28 -0.7 30,870 + MMJJ_RS00165 0.28 -1.9 30,885 - MMJJ_RS00165 0.30 -0.3 30,887 - MMJJ_RS00165 0.30 -1.7 30,912 - MMJJ_RS00165 0.33 -2.4 30,913 + MMJJ_RS00165 0.33 -1.4 30,932 + MMJJ_RS00165 0.35 +2.1 30,947 - MMJJ_RS00165 0.36 +1.5 30,947 - MMJJ_RS00165 0.36 +0.7 30,948 + MMJJ_RS00165 0.37 +3.1 30,948 + MMJJ_RS00165 0.37 -1.0 30,951 - MMJJ_RS00165 0.37 +2.4 30,967 - MMJJ_RS00165 0.39 +0.7 30,968 + MMJJ_RS00165 0.39 -0.1 31,002 - MMJJ_RS00165 0.43 -1.4 31,003 + MMJJ_RS00165 0.43 +0.8 31,003 + MMJJ_RS00165 0.43 -2.0 31,064 - MMJJ_RS00165 0.49 -1.2 31,086 - MMJJ_RS00165 0.52 -0.8 31,086 - MMJJ_RS00165 0.52 +2.9 31,086 - MMJJ_RS00165 0.52 +1.4 31,086 - MMJJ_RS00165 0.52 -2.5 31,088 - MMJJ_RS00165 0.52 -1.3 31,088 - MMJJ_RS00165 0.52 -2.9 31,088 - MMJJ_RS00165 0.52 +2.3 31,089 + MMJJ_RS00165 0.52 +1.6 31,093 - MMJJ_RS00165 0.53 +2.7 31,094 + MMJJ_RS00165 0.53 +2.4 31,100 - MMJJ_RS00165 0.53 +0.6 31,114 - +0.1 31,120 - MMJJ_RS00165 0.56 +1.9 31,125 + MMJJ_RS00165 0.56 +0.1 31,142 + MMJJ_RS00165 0.58 +4.0 31,180 - MMJJ_RS00165 0.62 +2.5 31,198 - MMJJ_RS00165 0.64 -1.4 31,198 - MMJJ_RS00165 0.64 +1.1 31,253 - MMJJ_RS00165 0.70 +1.7 31,284 + MMJJ_RS00165 0.74 +1.0 31,300 - MMJJ_RS00165 0.76 -1.1 31,304 - MMJJ_RS00165 0.76 -1.9 31,306 - MMJJ_RS00165 0.76 +0.6 31,404 + MMJJ_RS00165 0.87 -0.3 31,481 - +4.1 31,481 - -1.7 31,482 + -0.4
Or see this region's nucleotide sequence