Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00120 and MMJJ_RS00125 are separated by 17 nucleotides MMJJ_RS00125 and MMJJ_RS00130 are separated by 256 nucleotides
MMJJ_RS00120: MMJJ_RS00120 - histidinol dehydrogenase, at 22,922 to 24,196
_RS00120
MMJJ_RS00125: MMJJ_RS00125 - KEOPS complex subunit Cgi121, at 24,214 to 24,645
_RS00125
MMJJ_RS00130: MMJJ_RS00130 - uroporphyrinogen-III C-methyltransferase, at 24,902 to 25,621
_RS00130
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.472 kb on - strand, within MMJJ_RS00125 at 24.502 kb on + strand at 24.524 kb on - strand, within MMJJ_RS00125 at 24.528 kb on - strand, within MMJJ_RS00125 at 24.529 kb on + strand, within MMJJ_RS00125 at 24.540 kb on - strand, within MMJJ_RS00125 at 24.553 kb on + strand, within MMJJ_RS00125 at 24.556 kb on - strand, within MMJJ_RS00125 at 24.690 kb on + strand at 24.690 kb on + strand at 24.714 kb on + strand at 24.725 kb on - strand at 24.726 kb on + strand at 24.743 kb on - strand at 24.744 kb on + strand at 24.745 kb on - strand at 24.745 kb on - strand at 24.749 kb on - strand at 24.753 kb on - strand at 24.754 kb on + strand at 24.779 kb on + strand at 24.796 kb on + strand at 24.817 kb on + strand at 24.829 kb on + strand at 24.833 kb on + strand at 24.855 kb on - strand at 24.855 kb on - strand at 24.856 kb on + strand at 24.856 kb on + strand at 24.861 kb on + strand at 24.861 kb on + strand at 24.861 kb on + strand at 25.147 kb on + strand, within MMJJ_RS00130 at 25.221 kb on - strand, within MMJJ_RS00130 at 25.246 kb on - strand, within MMJJ_RS00130 at 25.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 24,472 - MMJJ_RS00125 0.60 +0.1 24,502 + +1.1 24,524 - MMJJ_RS00125 0.72 -0.9 24,528 - MMJJ_RS00125 0.73 -0.9 24,529 + MMJJ_RS00125 0.73 -0.9 24,540 - MMJJ_RS00125 0.75 -0.9 24,553 + MMJJ_RS00125 0.78 +0.1 24,556 - MMJJ_RS00125 0.79 +0.1 24,690 + +1.1 24,690 + -1.7 24,714 + -0.9 24,725 - -0.7 24,726 + -0.9 24,743 - +1.1 24,744 + -1.9 24,745 - -1.7 24,745 - -1.3 24,749 - -1.3 24,753 - +3.3 24,754 + +0.3 24,779 + -0.6 24,796 + -2.1 24,817 + -1.9 24,829 + -1.6 24,833 + -0.5 24,855 - -2.4 24,855 - -1.7 24,856 + -2.5 24,856 + -1.5 24,861 + -0.9 24,861 + -1.9 24,861 + -0.9 25,147 + MMJJ_RS00130 0.34 +0.1 25,221 - MMJJ_RS00130 0.44 -0.5 25,246 - MMJJ_RS00130 0.48 -0.7 25,615 + +0.9
Or see this region's nucleotide sequence