Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00080

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
14,540	-				-1.3
14,556	-				+0.3
14,556	-				-3.4
14,557	+				-1.9
14,557	+				-2.1
14,589	-		MMJJ_RS00070	0.18	-3.1
14,594	-		MMJJ_RS00070	0.21	-1.5
14,595	+		MMJJ_RS00070	0.21	-1.6
14,717	-		MMJJ_RS00070	0.89	-1.8
14,735	+				-0.7
14,822	+				+0.1
14,854	-		MMJJ_RS00075	0.13	-4.3
14,855	+		MMJJ_RS00075	0.14	-1.6
14,855	+		MMJJ_RS00075	0.14	-0.5
14,963	+		MMJJ_RS00075	0.27	-3.0
15,112	-		MMJJ_RS00075	0.46	+0.1
15,112	-		MMJJ_RS00075	0.46	+0.1
15,112	-		MMJJ_RS00075	0.46	-2.5
15,112	-		MMJJ_RS00075	0.46	-1.7
15,113	+		MMJJ_RS00075	0.46	-2.9
15,113	+		MMJJ_RS00075	0.46	-2.5
15,113	+		MMJJ_RS00075	0.46	-3.1
15,113	+		MMJJ_RS00075	0.46	+0.1
15,113	+		MMJJ_RS00075	0.46	-2.4
15,118	-		MMJJ_RS00075	0.47	-1.9
15,119	+		MMJJ_RS00075	0.47	-2.3
15,153	-		MMJJ_RS00075	0.52	-1.9
15,154	+		MMJJ_RS00075	0.52	-1.5
15,154	+		MMJJ_RS00075	0.52	-0.5
15,154	+				+0.1
15,154	+		MMJJ_RS00075	0.52	-1.8
15,164	+		MMJJ_RS00075	0.53	-3.2
15,184	-		MMJJ_RS00075	0.56	-2.7
15,184	-		MMJJ_RS00075	0.56	-1.7
15,184	-		MMJJ_RS00075	0.56	+0.1
15,256	-		MMJJ_RS00075	0.65	-1.9
15,262	-		MMJJ_RS00075	0.66	-3.6
15,295	-		MMJJ_RS00075	0.70	-3.4
15,385	+		MMJJ_RS00075	0.81	+0.1
15,409	-		MMJJ_RS00075	0.84	-2.1
15,433	-		MMJJ_RS00075	0.87	-2.3
15,434	+		MMJJ_RS00075	0.87	-2.3
15,464	+				-1.7
15,464	+				-1.8
15,465	-				-2.7
15,465	-				-2.5
15,465	-				-1.7
15,465	-				-1.5
15,466	+				-1.3
15,473	+				-3.2
15,516	-				-2.7
15,655	+		MMJJ_RS00080	0.19	-2.0
15,655	+		MMJJ_RS00080	0.19	-2.1
15,748	+		MMJJ_RS00080	0.33	-2.0
15,748	+		MMJJ_RS00080	0.33	+0.5
15,832	+		MMJJ_RS00080	0.46	-1.7
15,876	-		MMJJ_RS00080	0.53	-0.5
15,876	-		MMJJ_RS00080	0.53	-2.6
15,876	-		MMJJ_RS00080	0.53	-0.3
15,937	+		MMJJ_RS00080	0.62	-1.6
15,937	+		MMJJ_RS00080	0.62	-2.1
15,937	+		MMJJ_RS00080	0.62	-2.4
15,937	+		MMJJ_RS00080	0.62	-1.5
15,937	+		MMJJ_RS00080	0.62	-4.1
15,939	-		MMJJ_RS00080	0.63	+0.6
15,939	-		MMJJ_RS00080	0.63	-3.3
15,939	-		MMJJ_RS00080	0.63	-1.7
15,939	-		MMJJ_RS00080	0.63	-1.7
15,939	-		MMJJ_RS00080	0.63	-2.6
15,939	-		MMJJ_RS00080	0.63	-0.9
15,939	-		MMJJ_RS00080	0.63	-2.8
15,940	+		MMJJ_RS00080	0.63	-2.7
15,940	+		MMJJ_RS00080	0.63	-2.9
15,940	+		MMJJ_RS00080	0.63	-3.8
15,941	-		MMJJ_RS00080	0.63	-3.1
15,941	-		MMJJ_RS00080	0.63	-2.7
15,941	-		MMJJ_RS00080	0.63	-3.5
15,941	-		MMJJ_RS00080	0.63	-0.5
15,942	+		MMJJ_RS00080	0.63	-0.9
15,942	+		MMJJ_RS00080	0.63	-3.0
15,942	+		MMJJ_RS00080	0.63	-2.7
15,942	+		MMJJ_RS00080	0.63	+0.1
15,944	+		MMJJ_RS00080	0.63	-1.6
15,958	-		MMJJ_RS00080	0.65	-3.1
15,997	+		MMJJ_RS00080	0.71	-1.1
15,997	+		MMJJ_RS00080	0.71	+1.1
15,999	-		MMJJ_RS00080	0.72	+1.1
16,003	-		MMJJ_RS00080	0.72	-1.3
16,003	-		MMJJ_RS00080	0.72	-0.3
16,003	-		MMJJ_RS00080	0.72	-2.5
16,004	+		MMJJ_RS00080	0.72	-1.4
16,004	+		MMJJ_RS00080	0.72	-2.0
16,074	+		MMJJ_RS00080	0.83	-3.1
16,074	+		MMJJ_RS00080	0.83	-3.0
16,100	-		MMJJ_RS00080	0.87	-0.9
16,103	-		MMJJ_RS00080	0.88	-0.7
16,103	-		MMJJ_RS00080	0.88	-2.0
16,105	-		MMJJ_RS00080	0.88	-3.3
16,127	-				-3.9
16,139	+				-2.2
16,139	+				-1.4
16,212	-				+2.4
16,212	-				-3.5
16,214	-				+0.4
16,215	+				-1.0
16,215	+				-1.0
16,226	-				-1.7
16,226	-				-0.5
16,226	-				+0.8
16,226	-				-2.7
16,226	-				-1.7
16,226	-				-1.7
16,226	-				-1.3
16,227	+				-0.9
16,227	+				-2.1
16,227	+				-2.5
16,227	+				-2.4
16,227	+				+0.1
16,227	+				-0.5
16,227	+				-1.5
16,227	+				-3.0
16,228	-				+2.3
16,228	-				+1.7
16,229	+				+0.9
16,229	+				-1.2
16,230	-				-1.9
16,230	-				-0.1
16,235	+				+1.8
16,266	+				-1.1
16,307	-				-0.6
16,307	-				-1.9
16,307	-				-0.9
16,307	-				+2.8
16,308	+				-0.4
16,308	+				+2.0
16,308	+				-1.2
16,336	+				-3.0
16,349	+				+1.9
16,400	-				-1.1
16,401	+				+1.3
16,401	+				-1.7
16,415	-				-2.3
16,468	-				-1.3
16,469	+				+1.6
16,724	-		MMJJ_RS00085	0.38	+0.8
16,725	+		MMJJ_RS00085	0.38	+2.5
16,725	+		MMJJ_RS00085	0.38	+1.1
16,742	+		MMJJ_RS00085	0.40	+1.9
16,759	+		MMJJ_RS00085	0.42	-0.0
16,803	-		MMJJ_RS00085	0.47	-3.3
16,803	-		MMJJ_RS00085	0.47	-1.9
16,993	-		MMJJ_RS00085	0.69	-1.4
17,001	-		MMJJ_RS00085	0.70	+1.3
17,002	+		MMJJ_RS00085	0.70	+2.4
17,009	+		MMJJ_RS00085	0.71	+1.5
17,020	-		MMJJ_RS00085	0.72	-3.0
17,020	-		MMJJ_RS00085	0.72	+2.2
17,065	+		MMJJ_RS00085	0.78	+0.2
17,070	-		MMJJ_RS00085	0.78	+0.3
17,071	+		MMJJ_RS00085	0.78	-0.4
17,086	-		MMJJ_RS00085	0.80	+2.6
17,093	-		MMJJ_RS00085	0.81	+0.8
17,093	-		MMJJ_RS00085	0.81	-3.2
17,093	-		MMJJ_RS00085	0.81	+1.0
17,093	-		MMJJ_RS00085	0.81	+1.5
17,093	-		MMJJ_RS00085	0.81	+1.6
17,094	+		MMJJ_RS00085	0.81	-1.5
17,094	+		MMJJ_RS00085	0.81	-0.9
17,094	+		MMJJ_RS00085	0.81	-1.5
17,094	+		MMJJ_RS00085	0.81	-3.5
17,106	-		MMJJ_RS00085	0.83	+0.7
17,106	-		MMJJ_RS00085	0.83	+1.7
17,107	+		MMJJ_RS00085	0.83	-0.9
17,107	+		MMJJ_RS00085	0.83	-0.1
17,117	-		MMJJ_RS00085	0.84	+1.3
17,117	-		MMJJ_RS00085	0.84	-1.3
17,117	-		MMJJ_RS00085	0.84	-2.1
17,117	-		MMJJ_RS00085	0.84	-1.5
17,117	-		MMJJ_RS00085	0.84	+0.0
17,118	+		MMJJ_RS00085	0.84	+1.7
17,118	+		MMJJ_RS00085	0.84	-1.9
17,118	+		MMJJ_RS00085	0.84	-0.8
17,118	+		MMJJ_RS00085	0.84	-1.4
17,123	-		MMJJ_RS00085	0.85	+1.7
17,158	-		MMJJ_RS00085	0.89	-1.5
17,159	+		MMJJ_RS00085	0.89	-3.2
17,179	-				+0.3