Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00060 and MMJJ_RS00065 are separated by 4 nucleotides MMJJ_RS00065 and MMJJ_RS00070 are separated by 104 nucleotides MMJJ_RS00070 and MMJJ_RS00075 are separated by 12 nucleotides MMJJ_RS00075 and MMJJ_RS00080 overlap by 4 nucleotides MMJJ_RS00080 and MMJJ_RS00085 are separated by 218 nucleotides
MMJJ_RS00060: MMJJ_RS00060 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 12,610 to 13,983
_RS00060
MMJJ_RS00065: MMJJ_RS00065 - 4Fe-4S dicluster domain-containing protein, at 13,988 to 14,452
_RS00065
MMJJ_RS00070: MMJJ_RS00070 - CooT family nickel-binding protein, at 14,557 to 14,736
_RS00070
MMJJ_RS00075: MMJJ_RS00075 - AAA family ATPase, at 14,749 to 15,531
_RS00075
MMJJ_RS00080: MMJJ_RS00080 - DUF166 domain-containing protein, at 15,528 to 16,184
_RS00080
MMJJ_RS00085: MMJJ_RS00085 - substrate-binding domain-containing protein, at 16,403 to 17,254
_RS00085
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 13.750 kb on + strand, within MMJJ_RS00060 at 13.818 kb on - strand, within MMJJ_RS00060 at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.926 kb on + strand at 13.926 kb on + strand at 13.968 kb on + strand at 14.005 kb on + strand at 14.041 kb on - strand, within MMJJ_RS00065 at 14.041 kb on - strand, within MMJJ_RS00065 at 14.043 kb on - strand, within MMJJ_RS00065 at 14.053 kb on - strand, within MMJJ_RS00065 at 14.054 kb on + strand, within MMJJ_RS00065 at 14.080 kb on - strand, within MMJJ_RS00065 at 14.081 kb on + strand, within MMJJ_RS00065 at 14.081 kb on + strand, within MMJJ_RS00065 at 14.083 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.149 kb on + strand, within MMJJ_RS00065 at 14.157 kb on - strand, within MMJJ_RS00065 at 14.175 kb on - strand, within MMJJ_RS00065 at 14.176 kb on + strand, within MMJJ_RS00065 at 14.190 kb on - strand, within MMJJ_RS00065 at 14.211 kb on - strand, within MMJJ_RS00065 at 14.242 kb on - strand, within MMJJ_RS00065 at 14.254 kb on - strand at 14.290 kb on - strand, within MMJJ_RS00065 at 14.312 kb on + strand, within MMJJ_RS00065 at 14.341 kb on - strand, within MMJJ_RS00065 at 14.341 kb on - strand, within MMJJ_RS00065 at 14.361 kb on - strand, within MMJJ_RS00065 at 14.389 kb on - strand, within MMJJ_RS00065 at 14.390 kb on + strand, within MMJJ_RS00065 at 14.450 kb on - strand at 14.450 kb on - strand at 14.474 kb on - strand at 14.484 kb on - strand at 14.485 kb on + strand at 14.496 kb on - strand at 14.496 kb on - strand at 14.504 kb on - strand at 14.509 kb on - strand at 14.516 kb on - strand at 14.540 kb on - strand at 14.556 kb on - strand at 14.556 kb on - strand at 14.557 kb on + strand at 14.557 kb on + strand at 14.589 kb on - strand, within MMJJ_RS00070 at 14.594 kb on - strand, within MMJJ_RS00070 at 14.595 kb on + strand, within MMJJ_RS00070 at 14.717 kb on - strand, within MMJJ_RS00070 at 14.735 kb on + strand at 14.822 kb on + strand at 14.854 kb on - strand, within MMJJ_RS00075 at 14.855 kb on + strand, within MMJJ_RS00075 at 14.855 kb on + strand, within MMJJ_RS00075 at 14.963 kb on + strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.118 kb on - strand, within MMJJ_RS00075 at 15.119 kb on + strand, within MMJJ_RS00075 at 15.153 kb on - strand, within MMJJ_RS00075 at 15.154 kb on + strand, within MMJJ_RS00075 at 15.154 kb on + strand, within MMJJ_RS00075 at 15.154 kb on + strand at 15.154 kb on + strand, within MMJJ_RS00075 at 15.164 kb on + strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.256 kb on - strand, within MMJJ_RS00075 at 15.262 kb on - strand, within MMJJ_RS00075 at 15.295 kb on - strand, within MMJJ_RS00075 at 15.385 kb on + strand, within MMJJ_RS00075 at 15.409 kb on - strand, within MMJJ_RS00075 at 15.433 kb on - strand, within MMJJ_RS00075 at 15.434 kb on + strand, within MMJJ_RS00075 at 15.464 kb on + strand at 15.464 kb on + strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.466 kb on + strand at 15.473 kb on + strand at 15.516 kb on - strand at 15.655 kb on + strand, within MMJJ_RS00080 at 15.655 kb on + strand, within MMJJ_RS00080 at 15.748 kb on + strand, within MMJJ_RS00080 at 15.748 kb on + strand, within MMJJ_RS00080 at 15.832 kb on + strand, within MMJJ_RS00080 at 15.876 kb on - strand, within MMJJ_RS00080 at 15.876 kb on - strand, within MMJJ_RS00080 at 15.876 kb on - strand, within MMJJ_RS00080 at 15.937 kb on + strand, within MMJJ_RS00080 at 15.937 kb on + strand, within MMJJ_RS00080 at 15.937 kb on + strand, within MMJJ_RS00080 at 15.937 kb on + strand, within MMJJ_RS00080 at 15.937 kb on + strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.939 kb on - strand, within MMJJ_RS00080 at 15.940 kb on + strand, within MMJJ_RS00080 at 15.940 kb on + strand, within MMJJ_RS00080 at 15.940 kb on + strand, within MMJJ_RS00080 at 15.941 kb on - strand, within MMJJ_RS00080 at 15.941 kb on - strand, within MMJJ_RS00080 at 15.941 kb on - strand, within MMJJ_RS00080 at 15.941 kb on - strand, within MMJJ_RS00080 at 15.942 kb on + strand, within MMJJ_RS00080 at 15.942 kb on + strand, within MMJJ_RS00080 at 15.942 kb on + strand, within MMJJ_RS00080 at 15.942 kb on + strand, within MMJJ_RS00080 at 15.944 kb on + strand, within MMJJ_RS00080 at 15.958 kb on - strand, within MMJJ_RS00080 at 15.997 kb on + strand, within MMJJ_RS00080 at 15.997 kb on + strand, within MMJJ_RS00080 at 15.999 kb on - strand, within MMJJ_RS00080 at 16.003 kb on - strand, within MMJJ_RS00080 at 16.003 kb on - strand, within MMJJ_RS00080 at 16.003 kb on - strand, within MMJJ_RS00080 at 16.004 kb on + strand, within MMJJ_RS00080 at 16.004 kb on + strand, within MMJJ_RS00080 at 16.074 kb on + strand, within MMJJ_RS00080 at 16.074 kb on + strand, within MMJJ_RS00080 at 16.100 kb on - strand, within MMJJ_RS00080 at 16.103 kb on - strand, within MMJJ_RS00080 at 16.103 kb on - strand, within MMJJ_RS00080 at 16.105 kb on - strand, within MMJJ_RS00080 at 16.127 kb on - strand at 16.139 kb on + strand at 16.139 kb on + strand at 16.212 kb on - strand at 16.212 kb on - strand at 16.214 kb on - strand at 16.215 kb on + strand at 16.215 kb on + strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.226 kb on - strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.227 kb on + strand at 16.228 kb on - strand at 16.228 kb on - strand at 16.229 kb on + strand at 16.229 kb on + strand at 16.230 kb on - strand at 16.230 kb on - strand at 16.235 kb on + strand at 16.266 kb on + strand at 16.307 kb on - strand at 16.307 kb on - strand at 16.307 kb on - strand at 16.307 kb on - strand at 16.308 kb on + strand at 16.308 kb on + strand at 16.308 kb on + strand at 16.336 kb on + strand at 16.349 kb on + strand at 16.400 kb on - strand at 16.401 kb on + strand at 16.401 kb on + strand at 16.415 kb on - strand at 16.468 kb on - strand at 16.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 13,750 + MMJJ_RS00060 0.83 -3.7 13,818 - MMJJ_RS00060 0.88 -0.6 13,925 - -3.8 13,925 - -3.3 13,925 - -3.1 13,925 - -2.4 13,925 - -3.0 13,925 - -2.1 13,926 + -3.5 13,926 + -2.8 13,968 + -3.0 14,005 + -2.6 14,041 - MMJJ_RS00065 0.11 -1.9 14,041 - MMJJ_RS00065 0.11 -1.7 14,043 - MMJJ_RS00065 0.12 -1.4 14,053 - MMJJ_RS00065 0.14 -1.5 14,054 + MMJJ_RS00065 0.14 -3.5 14,080 - MMJJ_RS00065 0.20 -0.5 14,081 + MMJJ_RS00065 0.20 -4.3 14,081 + MMJJ_RS00065 0.20 -2.1 14,083 - MMJJ_RS00065 0.20 -3.3 14,140 - MMJJ_RS00065 0.33 -2.6 14,140 - MMJJ_RS00065 0.33 -2.5 14,140 - MMJJ_RS00065 0.33 -1.4 14,140 - MMJJ_RS00065 0.33 -1.4 14,140 - MMJJ_RS00065 0.33 -2.0 14,148 - MMJJ_RS00065 0.34 -1.5 14,148 - MMJJ_RS00065 0.34 -1.5 14,148 - MMJJ_RS00065 0.34 -1.3 14,149 + MMJJ_RS00065 0.35 -2.2 14,157 - MMJJ_RS00065 0.36 +0.7 14,175 - MMJJ_RS00065 0.40 -1.9 14,176 + MMJJ_RS00065 0.40 -2.4 14,190 - MMJJ_RS00065 0.43 -0.5 14,211 - MMJJ_RS00065 0.48 -3.5 14,242 - MMJJ_RS00065 0.55 -1.1 14,254 - -0.3 14,290 - MMJJ_RS00065 0.65 -2.8 14,312 + MMJJ_RS00065 0.70 -1.7 14,341 - MMJJ_RS00065 0.76 -3.9 14,341 - MMJJ_RS00065 0.76 -1.3 14,361 - MMJJ_RS00065 0.80 -2.5 14,389 - MMJJ_RS00065 0.86 -1.2 14,390 + MMJJ_RS00065 0.86 +5.7 14,450 - +0.2 14,450 - -0.3 14,474 - -1.1 14,484 - -1.9 14,485 + -1.5 14,496 - -0.4 14,496 - +1.4 14,504 - -0.5 14,509 - -2.7 14,516 - -2.6 14,540 - -1.3 14,556 - +0.3 14,556 - -3.4 14,557 + -1.9 14,557 + -2.1 14,589 - MMJJ_RS00070 0.18 -3.1 14,594 - MMJJ_RS00070 0.21 -1.5 14,595 + MMJJ_RS00070 0.21 -1.6 14,717 - MMJJ_RS00070 0.89 -1.8 14,735 + -0.7 14,822 + +0.1 14,854 - MMJJ_RS00075 0.13 -4.3 14,855 + MMJJ_RS00075 0.14 -1.6 14,855 + MMJJ_RS00075 0.14 -0.5 14,963 + MMJJ_RS00075 0.27 -3.0 15,112 - MMJJ_RS00075 0.46 +0.1 15,112 - MMJJ_RS00075 0.46 +0.1 15,112 - MMJJ_RS00075 0.46 -2.5 15,112 - MMJJ_RS00075 0.46 -1.7 15,113 + MMJJ_RS00075 0.46 -2.9 15,113 + MMJJ_RS00075 0.46 -2.5 15,113 + MMJJ_RS00075 0.46 -3.1 15,113 + MMJJ_RS00075 0.46 +0.1 15,113 + MMJJ_RS00075 0.46 -2.4 15,118 - MMJJ_RS00075 0.47 -1.9 15,119 + MMJJ_RS00075 0.47 -2.3 15,153 - MMJJ_RS00075 0.52 -1.9 15,154 + MMJJ_RS00075 0.52 -1.5 15,154 + MMJJ_RS00075 0.52 -0.5 15,154 + +0.1 15,154 + MMJJ_RS00075 0.52 -1.8 15,164 + MMJJ_RS00075 0.53 -3.2 15,184 - MMJJ_RS00075 0.56 -2.7 15,184 - MMJJ_RS00075 0.56 -1.7 15,184 - MMJJ_RS00075 0.56 +0.1 15,256 - MMJJ_RS00075 0.65 -1.9 15,262 - MMJJ_RS00075 0.66 -3.6 15,295 - MMJJ_RS00075 0.70 -3.4 15,385 + MMJJ_RS00075 0.81 +0.1 15,409 - MMJJ_RS00075 0.84 -2.1 15,433 - MMJJ_RS00075 0.87 -2.3 15,434 + MMJJ_RS00075 0.87 -2.3 15,464 + -1.7 15,464 + -1.8 15,465 - -2.7 15,465 - -2.5 15,465 - -1.7 15,465 - -1.5 15,466 + -1.3 15,473 + -3.2 15,516 - -2.7 15,655 + MMJJ_RS00080 0.19 -2.0 15,655 + MMJJ_RS00080 0.19 -2.1 15,748 + MMJJ_RS00080 0.33 -2.0 15,748 + MMJJ_RS00080 0.33 +0.5 15,832 + MMJJ_RS00080 0.46 -1.7 15,876 - MMJJ_RS00080 0.53 -0.5 15,876 - MMJJ_RS00080 0.53 -2.6 15,876 - MMJJ_RS00080 0.53 -0.3 15,937 + MMJJ_RS00080 0.62 -1.6 15,937 + MMJJ_RS00080 0.62 -2.1 15,937 + MMJJ_RS00080 0.62 -2.4 15,937 + MMJJ_RS00080 0.62 -1.5 15,937 + MMJJ_RS00080 0.62 -4.1 15,939 - MMJJ_RS00080 0.63 +0.6 15,939 - MMJJ_RS00080 0.63 -3.3 15,939 - MMJJ_RS00080 0.63 -1.7 15,939 - MMJJ_RS00080 0.63 -1.7 15,939 - MMJJ_RS00080 0.63 -2.6 15,939 - MMJJ_RS00080 0.63 -0.9 15,939 - MMJJ_RS00080 0.63 -2.8 15,940 + MMJJ_RS00080 0.63 -2.7 15,940 + MMJJ_RS00080 0.63 -2.9 15,940 + MMJJ_RS00080 0.63 -3.8 15,941 - MMJJ_RS00080 0.63 -3.1 15,941 - MMJJ_RS00080 0.63 -2.7 15,941 - MMJJ_RS00080 0.63 -3.5 15,941 - MMJJ_RS00080 0.63 -0.5 15,942 + MMJJ_RS00080 0.63 -0.9 15,942 + MMJJ_RS00080 0.63 -3.0 15,942 + MMJJ_RS00080 0.63 -2.7 15,942 + MMJJ_RS00080 0.63 +0.1 15,944 + MMJJ_RS00080 0.63 -1.6 15,958 - MMJJ_RS00080 0.65 -3.1 15,997 + MMJJ_RS00080 0.71 -1.1 15,997 + MMJJ_RS00080 0.71 +1.1 15,999 - MMJJ_RS00080 0.72 +1.1 16,003 - MMJJ_RS00080 0.72 -1.3 16,003 - MMJJ_RS00080 0.72 -0.3 16,003 - MMJJ_RS00080 0.72 -2.5 16,004 + MMJJ_RS00080 0.72 -1.4 16,004 + MMJJ_RS00080 0.72 -2.0 16,074 + MMJJ_RS00080 0.83 -3.1 16,074 + MMJJ_RS00080 0.83 -3.0 16,100 - MMJJ_RS00080 0.87 -0.9 16,103 - MMJJ_RS00080 0.88 -0.7 16,103 - MMJJ_RS00080 0.88 -2.0 16,105 - MMJJ_RS00080 0.88 -3.3 16,127 - -3.9 16,139 + -2.2 16,139 + -1.4 16,212 - +2.4 16,212 - -3.5 16,214 - +0.4 16,215 + -1.0 16,215 + -1.0 16,226 - -1.7 16,226 - -0.5 16,226 - +0.8 16,226 - -2.7 16,226 - -1.7 16,226 - -1.7 16,226 - -1.3 16,227 + -0.9 16,227 + -2.1 16,227 + -2.5 16,227 + -2.4 16,227 + +0.1 16,227 + -0.5 16,227 + -1.5 16,227 + -3.0 16,228 - +2.3 16,228 - +1.7 16,229 + +0.9 16,229 + -1.2 16,230 - -1.9 16,230 - -0.1 16,235 + +1.8 16,266 + -1.1 16,307 - -0.6 16,307 - -1.9 16,307 - -0.9 16,307 - +2.8 16,308 + -0.4 16,308 + +2.0 16,308 + -1.2 16,336 + -3.0 16,349 + +1.9 16,400 - -1.1 16,401 + +1.3 16,401 + -1.7 16,415 - -2.3 16,468 - -1.3 16,469 + +1.6
Or see this region's nucleotide sequence