Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00060 and MMJJ_RS00065 are separated by 4 nucleotides MMJJ_RS00065 and MMJJ_RS00070 are separated by 104 nucleotides MMJJ_RS00070 and MMJJ_RS00075 are separated by 12 nucleotides MMJJ_RS00075 and MMJJ_RS00080 overlap by 4 nucleotides
MMJJ_RS00060: MMJJ_RS00060 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 12,610 to 13,983
_RS00060
MMJJ_RS00065: MMJJ_RS00065 - 4Fe-4S dicluster domain-containing protein, at 13,988 to 14,452
_RS00065
MMJJ_RS00070: MMJJ_RS00070 - CooT family nickel-binding protein, at 14,557 to 14,736
_RS00070
MMJJ_RS00075: MMJJ_RS00075 - AAA family ATPase, at 14,749 to 15,531
_RS00075
MMJJ_RS00080: MMJJ_RS00080 - DUF166 domain-containing protein, at 15,528 to 16,184
_RS00080
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 13.580 kb on - strand, within MMJJ_RS00060 at 13.668 kb on - strand, within MMJJ_RS00060 at 13.669 kb on + strand, within MMJJ_RS00060 at 13.683 kb on + strand, within MMJJ_RS00060 at 13.687 kb on - strand, within MMJJ_RS00060 at 13.688 kb on + strand, within MMJJ_RS00060 at 13.690 kb on - strand, within MMJJ_RS00060 at 13.690 kb on - strand, within MMJJ_RS00060 at 13.691 kb on + strand, within MMJJ_RS00060 at 13.691 kb on + strand, within MMJJ_RS00060 at 13.736 kb on - strand, within MMJJ_RS00060 at 13.737 kb on + strand, within MMJJ_RS00060 at 13.737 kb on + strand, within MMJJ_RS00060 at 13.750 kb on + strand, within MMJJ_RS00060 at 13.818 kb on - strand, within MMJJ_RS00060 at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.925 kb on - strand at 13.926 kb on + strand at 13.926 kb on + strand at 13.968 kb on + strand at 14.005 kb on + strand at 14.041 kb on - strand, within MMJJ_RS00065 at 14.041 kb on - strand, within MMJJ_RS00065 at 14.043 kb on - strand, within MMJJ_RS00065 at 14.053 kb on - strand, within MMJJ_RS00065 at 14.054 kb on + strand, within MMJJ_RS00065 at 14.080 kb on - strand, within MMJJ_RS00065 at 14.081 kb on + strand, within MMJJ_RS00065 at 14.081 kb on + strand, within MMJJ_RS00065 at 14.083 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.140 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.148 kb on - strand, within MMJJ_RS00065 at 14.149 kb on + strand, within MMJJ_RS00065 at 14.157 kb on - strand, within MMJJ_RS00065 at 14.175 kb on - strand, within MMJJ_RS00065 at 14.176 kb on + strand, within MMJJ_RS00065 at 14.190 kb on - strand, within MMJJ_RS00065 at 14.211 kb on - strand, within MMJJ_RS00065 at 14.242 kb on - strand, within MMJJ_RS00065 at 14.254 kb on - strand at 14.290 kb on - strand, within MMJJ_RS00065 at 14.312 kb on + strand, within MMJJ_RS00065 at 14.341 kb on - strand, within MMJJ_RS00065 at 14.341 kb on - strand, within MMJJ_RS00065 at 14.361 kb on - strand, within MMJJ_RS00065 at 14.389 kb on - strand, within MMJJ_RS00065 at 14.390 kb on + strand, within MMJJ_RS00065 at 14.450 kb on - strand at 14.450 kb on - strand at 14.474 kb on - strand at 14.484 kb on - strand at 14.485 kb on + strand at 14.496 kb on - strand at 14.496 kb on - strand at 14.504 kb on - strand at 14.509 kb on - strand at 14.516 kb on - strand at 14.540 kb on - strand at 14.556 kb on - strand at 14.556 kb on - strand at 14.557 kb on + strand at 14.557 kb on + strand at 14.589 kb on - strand, within MMJJ_RS00070 at 14.594 kb on - strand, within MMJJ_RS00070 at 14.595 kb on + strand, within MMJJ_RS00070 at 14.717 kb on - strand, within MMJJ_RS00070 at 14.735 kb on + strand at 14.822 kb on + strand at 14.854 kb on - strand, within MMJJ_RS00075 at 14.855 kb on + strand, within MMJJ_RS00075 at 14.855 kb on + strand, within MMJJ_RS00075 at 14.963 kb on + strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.112 kb on - strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.113 kb on + strand, within MMJJ_RS00075 at 15.118 kb on - strand, within MMJJ_RS00075 at 15.119 kb on + strand, within MMJJ_RS00075 at 15.153 kb on - strand, within MMJJ_RS00075 at 15.154 kb on + strand, within MMJJ_RS00075 at 15.154 kb on + strand, within MMJJ_RS00075 at 15.154 kb on + strand at 15.154 kb on + strand, within MMJJ_RS00075 at 15.164 kb on + strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.184 kb on - strand, within MMJJ_RS00075 at 15.256 kb on - strand, within MMJJ_RS00075 at 15.262 kb on - strand, within MMJJ_RS00075 at 15.295 kb on - strand, within MMJJ_RS00075 at 15.385 kb on + strand, within MMJJ_RS00075 at 15.409 kb on - strand, within MMJJ_RS00075 at 15.433 kb on - strand, within MMJJ_RS00075 at 15.434 kb on + strand, within MMJJ_RS00075 at 15.464 kb on + strand at 15.464 kb on + strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.465 kb on - strand at 15.466 kb on + strand at 15.473 kb on + strand at 15.516 kb on - strand at 15.655 kb on + strand, within MMJJ_RS00080 at 15.655 kb on + strand, within MMJJ_RS00080
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 13,580 - MMJJ_RS00060 0.71 -1.7 13,668 - MMJJ_RS00060 0.77 -2.5 13,669 + MMJJ_RS00060 0.77 -1.6 13,683 + MMJJ_RS00060 0.78 -2.5 13,687 - MMJJ_RS00060 0.78 -1.7 13,688 + MMJJ_RS00060 0.78 -2.7 13,690 - MMJJ_RS00060 0.79 -4.2 13,690 - MMJJ_RS00060 0.79 -1.3 13,691 + MMJJ_RS00060 0.79 -2.3 13,691 + MMJJ_RS00060 0.79 -2.7 13,736 - MMJJ_RS00060 0.82 -3.0 13,737 + MMJJ_RS00060 0.82 -1.2 13,737 + MMJJ_RS00060 0.82 -2.4 13,750 + MMJJ_RS00060 0.83 -3.7 13,818 - MMJJ_RS00060 0.88 -0.6 13,925 - -3.8 13,925 - -3.3 13,925 - -3.1 13,925 - -2.4 13,925 - -3.0 13,925 - -2.1 13,926 + -3.5 13,926 + -2.8 13,968 + -3.0 14,005 + -2.6 14,041 - MMJJ_RS00065 0.11 -1.9 14,041 - MMJJ_RS00065 0.11 -1.7 14,043 - MMJJ_RS00065 0.12 -1.4 14,053 - MMJJ_RS00065 0.14 -1.5 14,054 + MMJJ_RS00065 0.14 -3.5 14,080 - MMJJ_RS00065 0.20 -0.5 14,081 + MMJJ_RS00065 0.20 -4.3 14,081 + MMJJ_RS00065 0.20 -2.1 14,083 - MMJJ_RS00065 0.20 -3.3 14,140 - MMJJ_RS00065 0.33 -2.6 14,140 - MMJJ_RS00065 0.33 -2.5 14,140 - MMJJ_RS00065 0.33 -1.4 14,140 - MMJJ_RS00065 0.33 -1.4 14,140 - MMJJ_RS00065 0.33 -2.0 14,148 - MMJJ_RS00065 0.34 -1.5 14,148 - MMJJ_RS00065 0.34 -1.5 14,148 - MMJJ_RS00065 0.34 -1.3 14,149 + MMJJ_RS00065 0.35 -2.2 14,157 - MMJJ_RS00065 0.36 +0.7 14,175 - MMJJ_RS00065 0.40 -1.9 14,176 + MMJJ_RS00065 0.40 -2.4 14,190 - MMJJ_RS00065 0.43 -0.5 14,211 - MMJJ_RS00065 0.48 -3.5 14,242 - MMJJ_RS00065 0.55 -1.1 14,254 - -0.3 14,290 - MMJJ_RS00065 0.65 -2.8 14,312 + MMJJ_RS00065 0.70 -1.7 14,341 - MMJJ_RS00065 0.76 -3.9 14,341 - MMJJ_RS00065 0.76 -1.3 14,361 - MMJJ_RS00065 0.80 -2.5 14,389 - MMJJ_RS00065 0.86 -1.2 14,390 + MMJJ_RS00065 0.86 +5.7 14,450 - +0.2 14,450 - -0.3 14,474 - -1.1 14,484 - -1.9 14,485 + -1.5 14,496 - -0.4 14,496 - +1.4 14,504 - -0.5 14,509 - -2.7 14,516 - -2.6 14,540 - -1.3 14,556 - +0.3 14,556 - -3.4 14,557 + -1.9 14,557 + -2.1 14,589 - MMJJ_RS00070 0.18 -3.1 14,594 - MMJJ_RS00070 0.21 -1.5 14,595 + MMJJ_RS00070 0.21 -1.6 14,717 - MMJJ_RS00070 0.89 -1.8 14,735 + -0.7 14,822 + +0.1 14,854 - MMJJ_RS00075 0.13 -4.3 14,855 + MMJJ_RS00075 0.14 -1.6 14,855 + MMJJ_RS00075 0.14 -0.5 14,963 + MMJJ_RS00075 0.27 -3.0 15,112 - MMJJ_RS00075 0.46 +0.1 15,112 - MMJJ_RS00075 0.46 +0.1 15,112 - MMJJ_RS00075 0.46 -2.5 15,112 - MMJJ_RS00075 0.46 -1.7 15,113 + MMJJ_RS00075 0.46 -2.9 15,113 + MMJJ_RS00075 0.46 -2.5 15,113 + MMJJ_RS00075 0.46 -3.1 15,113 + MMJJ_RS00075 0.46 +0.1 15,113 + MMJJ_RS00075 0.46 -2.4 15,118 - MMJJ_RS00075 0.47 -1.9 15,119 + MMJJ_RS00075 0.47 -2.3 15,153 - MMJJ_RS00075 0.52 -1.9 15,154 + MMJJ_RS00075 0.52 -1.5 15,154 + MMJJ_RS00075 0.52 -0.5 15,154 + +0.1 15,154 + MMJJ_RS00075 0.52 -1.8 15,164 + MMJJ_RS00075 0.53 -3.2 15,184 - MMJJ_RS00075 0.56 -2.7 15,184 - MMJJ_RS00075 0.56 -1.7 15,184 - MMJJ_RS00075 0.56 +0.1 15,256 - MMJJ_RS00075 0.65 -1.9 15,262 - MMJJ_RS00075 0.66 -3.6 15,295 - MMJJ_RS00075 0.70 -3.4 15,385 + MMJJ_RS00075 0.81 +0.1 15,409 - MMJJ_RS00075 0.84 -2.1 15,433 - MMJJ_RS00075 0.87 -2.3 15,434 + MMJJ_RS00075 0.87 -2.3 15,464 + -1.7 15,464 + -1.8 15,465 - -2.7 15,465 - -2.5 15,465 - -1.7 15,465 - -1.5 15,466 + -1.3 15,473 + -3.2 15,516 - -2.7 15,655 + MMJJ_RS00080 0.19 -2.0 15,655 + MMJJ_RS00080 0.19 -2.1
Or see this region's nucleotide sequence