Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00055

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
10,611	+				+0.1
10,612	-				+1.1
10,613	+				-2.8
10,652	+				-1.3
10,652	+				-2.5
10,731	+				-3.1
10,775	-		MMJJ_RS00050	0.13	-3.2
10,775	-		MMJJ_RS00050	0.13	-0.5
10,776	+		MMJJ_RS00050	0.13	-2.5
10,869	-		MMJJ_RS00050	0.26	-3.9
10,882	+		MMJJ_RS00050	0.27	-2.7
10,882	+		MMJJ_RS00050	0.27	-1.7
10,914	+		MMJJ_RS00050	0.32	-1.3
10,914	+		MMJJ_RS00050	0.32	-1.9
10,940	-		MMJJ_RS00050	0.35	-2.2
10,997	+		MMJJ_RS00050	0.43	-2.8
11,050	-		MMJJ_RS00050	0.50	-3.2
11,060	-		MMJJ_RS00050	0.51	-1.2
11,061	+		MMJJ_RS00050	0.51	-2.5
11,126	-		MMJJ_RS00050	0.60	-2.5
11,127	+		MMJJ_RS00050	0.60	-2.7
11,127	+		MMJJ_RS00050	0.60	-1.7
11,133	+		MMJJ_RS00050	0.61	-2.8
11,228	-		MMJJ_RS00050	0.73	-2.0
11,235	-		MMJJ_RS00050	0.74	-0.5
11,235	-		MMJJ_RS00050	0.74	-3.9
11,299	+		MMJJ_RS00050	0.83	-0.7
11,310	+		MMJJ_RS00050	0.84	-3.7
11,335	-		MMJJ_RS00050	0.88	-3.7
11,497	-				-4.2
11,518	-				-3.0
11,519	+				-1.7
11,533	-				-2.5
11,540	+				-1.2
11,540	+				-0.5
11,546	-				-1.3
11,552	+				-2.4
11,629	+		MMJJ_RS00055	0.16	-3.2
11,888	-		MMJJ_RS00055	0.39	-2.8
11,888	-		MMJJ_RS00055	0.39	-1.5
11,928	+		MMJJ_RS00055	0.42	-4.8
11,978	+		MMJJ_RS00055	0.46	-2.6
12,169	-		MMJJ_RS00055	0.63	-2.8
12,170	+		MMJJ_RS00055	0.63	-2.3
12,170	+		MMJJ_RS00055	0.63	-1.3
12,170	+		MMJJ_RS00055	0.63	-2.8
12,170	+		MMJJ_RS00055	0.63	-2.6
12,174	+		MMJJ_RS00055	0.63	-4.5
12,174	+		MMJJ_RS00055	0.63	-1.0
12,233	+		MMJJ_RS00055	0.68	-2.7
12,233	+		MMJJ_RS00055	0.68	-2.4
12,410	-		MMJJ_RS00055	0.84	-1.1
12,428	-		MMJJ_RS00055	0.85	-2.0
12,452	-		MMJJ_RS00055	0.87	-1.6
12,453	+		MMJJ_RS00055	0.88	-2.1
12,478	-		MMJJ_RS00055	0.90	-2.1
12,478	-		MMJJ_RS00055	0.90	+0.1
12,478	-		MMJJ_RS00055	0.90	-1.7
12,479	+		MMJJ_RS00055	0.90	-0.9
12,506	-				-3.9
12,506	-				-2.5
12,524	+				-1.5
12,541	+				-1.7
12,587	-				-2.6
12,588	+				-1.3
12,630	-				-2.5
12,631	+				-4.7
12,641	-				-0.5
12,648	-				-2.6
12,648	-				-1.3
12,684	-				-2.5
12,685	+				-1.3
12,685	+				-2.3
12,685	+				-1.9
12,745	+				-2.3
12,792	+		MMJJ_RS00060	0.13	-2.5
12,817	+		MMJJ_RS00060	0.15	-1.4
12,829	+		MMJJ_RS00060	0.16	-0.9
12,848	-		MMJJ_RS00060	0.17	-2.6
12,851	-		MMJJ_RS00060	0.18	-2.3
12,853	-		MMJJ_RS00060	0.18	-2.3
12,854	+		MMJJ_RS00060	0.18	-1.7
12,854	+		MMJJ_RS00060	0.18	-3.8
12,854	+		MMJJ_RS00060	0.18	-1.7
12,854	+		MMJJ_RS00060	0.18	-1.7
12,859	-		MMJJ_RS00060	0.18	-2.5
12,859	-		MMJJ_RS00060	0.18	+0.5
12,868	+		MMJJ_RS00060	0.19	-1.1
12,868	+		MMJJ_RS00060	0.19	+1.1
12,871	-		MMJJ_RS00060	0.19	-2.3
12,871	-		MMJJ_RS00060	0.19	-2.4
12,871	-		MMJJ_RS00060	0.19	-3.6
12,872	+		MMJJ_RS00060	0.19	-2.3
12,874	-		MMJJ_RS00060	0.19	-2.2
12,890	-		MMJJ_RS00060	0.20	-1.6
12,902	-		MMJJ_RS00060	0.21	-2.7
13,001	-		MMJJ_RS00060	0.28	-0.3
13,002	+		MMJJ_RS00060	0.29	-1.9
13,014	-		MMJJ_RS00060	0.29	-3.2
13,153	-		MMJJ_RS00060	0.40	-1.5
13,173	-		MMJJ_RS00060	0.41	+0.1
13,295	-		MMJJ_RS00060	0.50	-1.3
13,298	-		MMJJ_RS00060	0.50	-3.4
13,298	-		MMJJ_RS00060	0.50	-2.7
13,298	-		MMJJ_RS00060	0.50	-3.0
13,299	+				+1.1
13,299	+		MMJJ_RS00060	0.50	-3.2
13,299	+		MMJJ_RS00060	0.50	-1.5
13,299	+		MMJJ_RS00060	0.50	-2.7
13,301	-		MMJJ_RS00060	0.50	-1.5
13,302	+		MMJJ_RS00060	0.50	-2.3
13,315	-		MMJJ_RS00060	0.51	-0.5
13,315	-		MMJJ_RS00060	0.51	-3.7
13,339	+		MMJJ_RS00060	0.53	-3.3
13,362	+		MMJJ_RS00060	0.55	-1.5
13,458	+		MMJJ_RS00060	0.62	-1.7
13,507	-		MMJJ_RS00060	0.65	-3.4
13,507	-		MMJJ_RS00060	0.65	-1.5
13,507	-		MMJJ_RS00060	0.65	-2.9
13,508	+		MMJJ_RS00060	0.65	-1.4
13,517	-		MMJJ_RS00060	0.66	-3.1
13,517	-		MMJJ_RS00060	0.66	-1.7
13,518	+		MMJJ_RS00060	0.66	-2.4
13,540	+		MMJJ_RS00060	0.68	-4.0
13,580	-		MMJJ_RS00060	0.71	-1.7