Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00050

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
9,736	-		MMJJ_RS00045	0.32	-0.9
9,736	-		MMJJ_RS00045	0.32	-2.9
9,757	-		MMJJ_RS00045	0.34	-1.9
9,807	+		MMJJ_RS00045	0.38	-1.5
9,842	+		MMJJ_RS00045	0.40	+0.1
9,846	-		MMJJ_RS00045	0.40	-1.5
9,847	+		MMJJ_RS00045	0.40	+0.5
9,855	+		MMJJ_RS00045	0.41	-1.9
9,892	-		MMJJ_RS00045	0.44	-1.9
9,944	-		MMJJ_RS00045	0.48	-2.4
10,027	+		MMJJ_RS00045	0.54	-3.7
10,031	-		MMJJ_RS00045	0.54	-2.0
10,031	-		MMJJ_RS00045	0.54	-1.9
10,032	+		MMJJ_RS00045	0.54	-2.1
10,055	-		MMJJ_RS00045	0.56	-3.1
10,067	-		MMJJ_RS00045	0.56	-1.1
10,068	+		MMJJ_RS00045	0.57	-3.6
10,082	+		MMJJ_RS00045	0.58	+0.1
10,084	+		MMJJ_RS00045	0.58	-2.6
10,087	-		MMJJ_RS00045	0.58	-2.6
10,088	+		MMJJ_RS00045	0.58	-0.5
10,138	-		MMJJ_RS00045	0.62	-2.1
10,146	-		MMJJ_RS00045	0.62	-1.7
10,199	-		MMJJ_RS00045	0.66	-1.8
10,200	+		MMJJ_RS00045	0.66	-1.3
10,281	+		MMJJ_RS00045	0.72	-0.5
10,281	+		MMJJ_RS00045	0.72	-1.9
10,287	-		MMJJ_RS00045	0.72	-4.1
10,287	-		MMJJ_RS00045	0.72	+0.1
10,288	+		MMJJ_RS00045	0.73	-1.1
10,288	+		MMJJ_RS00045	0.73	-3.3
10,288	+		MMJJ_RS00045	0.73	-1.6
10,289	-		MMJJ_RS00045	0.73	-2.5
10,290	+		MMJJ_RS00045	0.73	-1.6
10,358	+		MMJJ_RS00045	0.78	+1.1
10,365	+		MMJJ_RS00045	0.78	-1.3
10,393	-		MMJJ_RS00045	0.80	-0.6
10,393	-		MMJJ_RS00045	0.80	-2.2
10,393	-		MMJJ_RS00045	0.80	-1.4
10,611	+				+0.1
10,612	-				+1.1
10,613	+				-2.8
10,652	+				-1.3
10,652	+				-2.5
10,731	+				-3.1
10,775	-		MMJJ_RS00050	0.13	-3.2
10,775	-		MMJJ_RS00050	0.13	-0.5
10,776	+		MMJJ_RS00050	0.13	-2.5
10,869	-		MMJJ_RS00050	0.26	-3.9
10,882	+		MMJJ_RS00050	0.27	-2.7
10,882	+		MMJJ_RS00050	0.27	-1.7
10,914	+		MMJJ_RS00050	0.32	-1.3
10,914	+		MMJJ_RS00050	0.32	-1.9
10,940	-		MMJJ_RS00050	0.35	-2.2
10,997	+		MMJJ_RS00050	0.43	-2.8
11,050	-		MMJJ_RS00050	0.50	-3.2
11,060	-		MMJJ_RS00050	0.51	-1.2
11,061	+		MMJJ_RS00050	0.51	-2.5
11,126	-		MMJJ_RS00050	0.60	-2.5
11,127	+		MMJJ_RS00050	0.60	-2.7
11,127	+		MMJJ_RS00050	0.60	-1.7
11,133	+		MMJJ_RS00050	0.61	-2.8
11,228	-		MMJJ_RS00050	0.73	-2.0
11,235	-		MMJJ_RS00050	0.74	-0.5
11,235	-		MMJJ_RS00050	0.74	-3.9
11,299	+		MMJJ_RS00050	0.83	-0.7
11,310	+		MMJJ_RS00050	0.84	-3.7
11,335	-		MMJJ_RS00050	0.88	-3.7
11,497	-				-4.2
11,518	-				-3.0
11,519	+				-1.7
11,533	-				-2.5
11,540	+				-1.2
11,540	+				-0.5
11,546	-				-1.3
11,552	+				-2.4
11,629	+		MMJJ_RS00055	0.16	-3.2
11,888	-		MMJJ_RS00055	0.39	-2.8
11,888	-		MMJJ_RS00055	0.39	-1.5
11,928	+		MMJJ_RS00055	0.42	-4.8
11,978	+		MMJJ_RS00055	0.46	-2.6
12,169	-		MMJJ_RS00055	0.63	-2.8
12,170	+		MMJJ_RS00055	0.63	-2.3
12,170	+		MMJJ_RS00055	0.63	-1.3
12,170	+		MMJJ_RS00055	0.63	-2.8
12,170	+		MMJJ_RS00055	0.63	-2.6
12,174	+		MMJJ_RS00055	0.63	-4.5
12,174	+		MMJJ_RS00055	0.63	-1.0
12,233	+		MMJJ_RS00055	0.68	-2.7
12,233	+		MMJJ_RS00055	0.68	-2.4
12,410	-		MMJJ_RS00055	0.84	-1.1