Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00045

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
8,335	+		MMJJ_RS00035	0.82	-0.9
8,380	-		MMJJ_RS00035	0.84	-3.7
8,380	-		MMJJ_RS00035	0.84	+0.1
8,426	-		MMJJ_RS00035	0.86	-2.3
8,507	-		MMJJ_RS00035	0.90	-1.5
8,507	-		MMJJ_RS00035	0.90	-2.9
8,508	+		MMJJ_RS00035	0.90	-1.8
8,528	-				-1.8
8,547	-				+1.1
8,562	+				-3.1
8,579	-				-2.9
8,579	-				-4.2
8,579	-				-2.8
8,580	+				-1.3
8,585	-				-3.6
8,596	-				-1.7
8,622	+				-3.5
8,627	-				-3.2
8,628	+				-2.7
8,749	-				-0.9
8,772	-				-1.9
8,773	+				-2.1
8,799	+				-1.1
8,799	+				-1.3
8,829	+		MMJJ_RS00040	0.13	-2.1
8,897	-		MMJJ_RS00040	0.26	-3.9
8,954	-		MMJJ_RS00040	0.37	-1.7
8,955	+		MMJJ_RS00040	0.37	-1.9
9,038	-		MMJJ_RS00040	0.53	-2.3
9,039	+		MMJJ_RS00040	0.54	-3.1
9,118	-		MMJJ_RS00040	0.69	-2.6
9,118	-		MMJJ_RS00040	0.69	-4.0
9,118	-		MMJJ_RS00040	0.69	-4.3
9,119	+		MMJJ_RS00040	0.69	-1.3
9,119	+		MMJJ_RS00040	0.69	+1.5
9,121	-		MMJJ_RS00040	0.69	-1.4
9,122	+		MMJJ_RS00040	0.70	+1.1
9,122	+		MMJJ_RS00040	0.70	-2.5
9,122	+		MMJJ_RS00040	0.70	-1.9
9,194	+		MMJJ_RS00040	0.83	-3.0
9,194	+		MMJJ_RS00040	0.83	-0.5
9,228	-				-3.8
9,228	-				-2.2
9,229	+				-0.7
9,229	+				-4.6
9,229	+				-2.8
9,229	+				-1.5
9,229	+				-2.7
9,253	-				-3.5
9,304	-				-0.9
9,305	+				-0.6
9,316	-				-1.3
9,317	+				-2.3
9,327	-				-2.5
9,327	-				-2.6
9,328	+				-2.6
9,407	+				-3.0
9,422	+				-2.5
9,545	+		MMJJ_RS00045	0.18	-3.0
9,576	-		MMJJ_RS00045	0.21	-1.5
9,576	-		MMJJ_RS00045	0.21	-2.4
9,576	-		MMJJ_RS00045	0.21	-1.8
9,591	+		MMJJ_RS00045	0.22	-1.7
9,598	-		MMJJ_RS00045	0.22	-0.5
9,599	+		MMJJ_RS00045	0.22	-1.1
9,599	+		MMJJ_RS00045	0.22	-0.7
9,661	-		MMJJ_RS00045	0.27	-2.6
9,736	-		MMJJ_RS00045	0.32	-0.9
9,736	-		MMJJ_RS00045	0.32	-2.9
9,757	-		MMJJ_RS00045	0.34	-1.9
9,807	+		MMJJ_RS00045	0.38	-1.5
9,842	+		MMJJ_RS00045	0.40	+0.1
9,846	-		MMJJ_RS00045	0.40	-1.5
9,847	+		MMJJ_RS00045	0.40	+0.5
9,855	+		MMJJ_RS00045	0.41	-1.9
9,892	-		MMJJ_RS00045	0.44	-1.9
9,944	-		MMJJ_RS00045	0.48	-2.4
10,027	+		MMJJ_RS00045	0.54	-3.7
10,031	-		MMJJ_RS00045	0.54	-2.0
10,031	-		MMJJ_RS00045	0.54	-1.9
10,032	+		MMJJ_RS00045	0.54	-2.1
10,055	-		MMJJ_RS00045	0.56	-3.1
10,067	-		MMJJ_RS00045	0.56	-1.1
10,068	+		MMJJ_RS00045	0.57	-3.6
10,082	+		MMJJ_RS00045	0.58	+0.1
10,084	+		MMJJ_RS00045	0.58	-2.6
10,087	-		MMJJ_RS00045	0.58	-2.6
10,088	+		MMJJ_RS00045	0.58	-0.5
10,138	-		MMJJ_RS00045	0.62	-2.1
10,146	-		MMJJ_RS00045	0.62	-1.7
10,199	-		MMJJ_RS00045	0.66	-1.8
10,200	+		MMJJ_RS00045	0.66	-1.3
10,281	+		MMJJ_RS00045	0.72	-0.5
10,281	+		MMJJ_RS00045	0.72	-1.9
10,287	-		MMJJ_RS00045	0.72	-4.1
10,287	-		MMJJ_RS00045	0.72	+0.1
10,288	+		MMJJ_RS00045	0.73	-1.1
10,288	+		MMJJ_RS00045	0.73	-3.3
10,288	+		MMJJ_RS00045	0.73	-1.6
10,289	-		MMJJ_RS00045	0.73	-2.5
10,290	+		MMJJ_RS00045	0.73	-1.6
10,358	+		MMJJ_RS00045	0.78	+1.1
10,365	+		MMJJ_RS00045	0.78	-1.3
10,393	-		MMJJ_RS00045	0.80	-0.6
10,393	-		MMJJ_RS00045	0.80	-2.2
10,393	-		MMJJ_RS00045	0.80	-1.4
10,611	+				+0.1
10,612	-				+1.1
10,613	+				-2.8
10,652	+				-1.3
10,652	+				-2.5
10,731	+				-3.1
10,775	-		MMJJ_RS00050	0.13	-3.2
10,775	-		MMJJ_RS00050	0.13	-0.5
10,776	+		MMJJ_RS00050	0.13	-2.5
10,869	-		MMJJ_RS00050	0.26	-3.9
10,882	+		MMJJ_RS00050	0.27	-2.7
10,882	+		MMJJ_RS00050	0.27	-1.7
10,914	+		MMJJ_RS00050	0.32	-1.3
10,914	+		MMJJ_RS00050	0.32	-1.9
10,940	-		MMJJ_RS00050	0.35	-2.2
10,997	+		MMJJ_RS00050	0.43	-2.8
11,050	-		MMJJ_RS00050	0.50	-3.2
11,060	-		MMJJ_RS00050	0.51	-1.2
11,061	+		MMJJ_RS00050	0.51	-2.5
11,126	-		MMJJ_RS00050	0.60	-2.5
11,127	+		MMJJ_RS00050	0.60	-2.7
11,127	+		MMJJ_RS00050	0.60	-1.7
11,133	+		MMJJ_RS00050	0.61	-2.8
11,228	-		MMJJ_RS00050	0.73	-2.0
11,235	-		MMJJ_RS00050	0.74	-0.5
11,235	-		MMJJ_RS00050	0.74	-3.9
11,299	+		MMJJ_RS00050	0.83	-0.7
11,310	+		MMJJ_RS00050	0.84	-3.7
11,335	-		MMJJ_RS00050	0.88	-3.7
11,497	-				-4.2
11,518	-				-3.0
11,519	+				-1.7
11,533	-				-2.5
11,540	+				-1.2
11,540	+				-0.5
11,546	-				-1.3
11,552	+				-2.4
11,629	+		MMJJ_RS00055	0.16	-3.2