Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08490

Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sodium nitrite 0.416666666666667 mM
1,560,991	-		MMJJ_RS08480	0.82	+1.2
1,561,055	+				-2.2
1,561,062	+				+1.2
1,561,068	-				-3.3
1,561,120	-				-1.9
1,561,120	-				-2.2
1,561,155	-				+1.6
1,561,177	-				-0.4
1,561,177	-				+1.2
1,561,177	-				-2.7
1,561,179	-				-2.5
1,561,179	-				-1.3
1,561,179	-				-1.9
1,561,183	-				-2.3
1,561,183	-				+1.2
1,561,184	+				+1.1
1,561,233	-				+2.4
1,561,234	+				-4.2
1,561,234	+				+0.7
1,561,234	+				+2.0
1,561,238	+				+1.5
1,561,242	-				+1.4
1,561,243	+				+1.4
1,561,246	-				+0.6
1,561,247	+				+1.2
1,561,254	+				-0.4
1,561,254	+				+1.5
1,561,255	-				+0.5
1,561,260	-				+0.9
1,561,260	-				-2.9
1,561,260	-				-1.8
1,561,260	-				-3.7
1,561,260	-				+0.3
1,561,260	-				+2.2
1,561,260	-				+2.7
1,561,261	+				-2.2
1,561,261	+				-2.0
1,561,261	+				+1.7
1,561,261	+				+0.2
1,561,262	-				-1.8
1,561,262	-				-0.2
1,561,262	-				+0.9
1,561,263	+				+0.2
1,561,264	-				+0.2
1,561,264	-				-2.4
1,561,264	-				-4.0
1,561,264	-				+1.8
1,561,264	-				-0.8
1,561,264	-				-1.4
1,561,264	-				+1.2
1,561,264	-				-2.0
1,561,264	-				-0.2
1,561,264	-				-0.8
1,561,264	-				-1.1
1,561,264	-				+2.0
1,561,264	-				-0.2
1,561,264	-				+2.2
1,561,265	+				-3.7
1,561,265	+				-0.9
1,561,265	+				-3.7
1,561,265	+				-1.7
1,561,265	+				-0.4
1,561,265	+				-3.0
1,561,265	+				+1.8
1,561,265	+				-2.4
1,561,265	+				+0.2
1,561,265	+				-1.4
1,561,265	+				+0.1
1,561,266	-				-0.8
1,561,266	-				+1.0
1,561,266	-				+0.6
1,561,266	-				-1.4
1,561,267	+				-1.1
1,561,267	+				-0.9
1,561,267	+				-1.9
1,561,267	+				+1.3
1,561,267	+				+0.4
1,561,267	+				-1.4
1,561,268	-				-1.8
1,561,268	-				+1.3
1,561,268	-				+1.4
1,561,268	-				-0.8
1,561,268	-				-1.4
1,561,268	-				-1.9
1,561,299	-				+2.8
1,561,311	-				-2.8
1,561,312	+				+2.0
1,561,315	+				+0.4
1,561,316	-				-2.8
1,561,316	-				+0.3
1,561,316	-				-1.8
1,561,316	-				-2.9
1,561,317	+				-2.4
1,561,317	+				-1.6
1,561,317	+				+0.0
1,561,320	-				-1.4
1,561,370	-				-3.0
1,561,371	+				-2.6
1,561,416	+		MMJJ_RS08485	0.19	-0.4
1,561,473	-		MMJJ_RS08485	0.32	+0.8
1,561,475	-		MMJJ_RS08485	0.33	-1.1
1,561,475	-		MMJJ_RS08485	0.33	-1.5
1,561,476	+		MMJJ_RS08485	0.33	-1.6
1,561,484	+		MMJJ_RS08485	0.35	-0.8
1,561,517	+		MMJJ_RS08485	0.43	+0.7
1,561,545	-		MMJJ_RS08485	0.49	+4.0
1,561,601	-		MMJJ_RS08485	0.63	-1.9
1,561,614	-		MMJJ_RS08485	0.66	-1.5
1,561,615	+		MMJJ_RS08485	0.66	-2.4
1,561,637	-		MMJJ_RS08485	0.71	-2.9
1,561,683	-		MMJJ_RS08485	0.82	+1.0
1,561,683	-		MMJJ_RS08485	0.82	-2.4
1,561,685	-		MMJJ_RS08485	0.83	+0.2
1,561,685	-		MMJJ_RS08485	0.83	-2.5
1,561,686	+		MMJJ_RS08485	0.83	+2.1
1,561,716	-				+1.9
1,561,716	-				-1.0
1,561,756	-				+0.7
1,561,756	-				+1.1
1,561,766	+				-0.1
1,561,827	+				-1.4
1,561,833	-				+0.4
1,561,847	-				-0.3
1,561,847	-				-1.0
1,561,847	-				+0.4
1,561,847	-				+1.0
1,561,848	+				+0.9
1,561,848	+				+1.3
1,561,848	+				+0.2
1,561,860	-				+1.2
1,561,861	+				-1.9
1,561,861	+				-0.8
1,561,862	-				+2.7
1,561,863	+				+0.4
1,561,879	-				-0.3
1,561,883	-				+0.2
1,561,884	+				-1.6
1,561,915	+				+2.4
1,561,950	-				+0.6
1,561,960	+				+2.2
1,561,968	-				-0.9
1,561,968	-				-1.8
1,561,969	+				-1.1
1,561,972	-				+1.4
1,561,977	+				-3.0
1,562,147	+		MMJJ_RS08490	0.45	-2.8
1,562,274	-		MMJJ_RS08490	0.75	+0.3
1,562,275	+		MMJJ_RS08490	0.75	-3.4
1,562,291	+		MMJJ_RS08490	0.79	+0.9
1,562,291	+		MMJJ_RS08490	0.79	-2.9
1,562,369	+				-2.5
1,562,390	+				+0.0
1,562,390	+				-2.6
1,562,397	-				-2.6
1,562,399	-				-2.2
1,562,400	+				-2.6
1,562,401	-				-0.2
1,562,440	-				-0.6
1,562,440	-				-0.4
1,562,453	-				+0.8
1,562,454	+				-2.6
1,562,473	+				-1.8
1,562,490	+				-2.2
1,562,490	+				+1.1
1,562,490	+				+2.0
1,562,496	-				-0.1
1,562,496	-				-0.4
1,562,496	-				-0.4
1,562,497	+				-2.6
1,562,497	+				+0.9
1,562,497	+				-0.4
1,562,497	+				-0.2
1,562,497	+				-2.9
1,562,501	+				-1.4
1,562,507	+				-2.6
1,562,507	+				-1.4
1,562,511	-				-0.8
1,562,511	-				+0.9
1,562,512	+				+0.8
1,562,526	-				-0.5
1,562,527	+				-0.8
1,562,531	+				-0.5
1,562,533	-				-2.4
1,562,550	-				-2.4
1,562,633	-				-3.0
1,562,633	-				+0.6
1,562,634	+				-3.2
1,562,638	-				-1.4
1,562,680	-				-1.4
1,562,724	-		MMJJ_RS08495	0.13	-0.8
1,562,724	-		MMJJ_RS08495	0.13	-1.1
1,562,763	-		MMJJ_RS08495	0.16	-1.9
1,562,790	+		MMJJ_RS08495	0.19	+1.5
1,562,795	+		MMJJ_RS08495	0.19	-1.4
1,562,795	+		MMJJ_RS08495	0.19	+0.2
1,562,826	-		MMJJ_RS08495	0.22	+1.7
1,562,826	-		MMJJ_RS08495	0.22	+0.8
1,562,827	+		MMJJ_RS08495	0.22	-2.9
1,562,845	-		MMJJ_RS08495	0.23	+0.9
1,562,846	+		MMJJ_RS08495	0.23	+0.8
1,562,902	-		MMJJ_RS08495	0.28	+2.9
1,562,902	-		MMJJ_RS08495	0.28	-1.4
1,562,902	-		MMJJ_RS08495	0.28	-0.1
1,562,903	+		MMJJ_RS08495	0.28	+0.7
1,562,903	+		MMJJ_RS08495	0.28	-1.7
1,562,909	-		MMJJ_RS08495	0.28	-0.8
1,562,915	+		MMJJ_RS08495	0.29	+2.0
1,562,935	-		MMJJ_RS08495	0.30	-2.1
1,562,978	-		MMJJ_RS08495	0.34	-2.6
1,562,993	-		MMJJ_RS08495	0.35	-0.8
1,562,993	-		MMJJ_RS08495	0.35	+1.3
1,562,994	+		MMJJ_RS08495	0.35	-1.1
1,563,003	-		MMJJ_RS08495	0.36	-0.7
1,563,004	+		MMJJ_RS08495	0.36	+1.7
1,563,042	+		MMJJ_RS08495	0.39	+0.2
1,563,052	-		MMJJ_RS08495	0.40	-3.0
1,563,115	-		MMJJ_RS08495	0.45	-1.1
1,563,139	+				-0.4
1,563,171	-		MMJJ_RS08495	0.50	-0.4
1,563,171	-		MMJJ_RS08495	0.50	-1.7
1,563,172	+		MMJJ_RS08495	0.50	+2.4
1,563,172	+		MMJJ_RS08495	0.50	+2.3
1,563,172	+		MMJJ_RS08495	0.50	-2.7
1,563,172	+		MMJJ_RS08495	0.50	+0.6
1,563,176	+		MMJJ_RS08495	0.50	-0.1
1,563,207	-		MMJJ_RS08495	0.53	+1.5
1,563,214	+		MMJJ_RS08495	0.53	+1.9
1,563,303	+		MMJJ_RS08495	0.61	-3.4
1,563,309	-		MMJJ_RS08495	0.61	-1.7
1,563,309	-		MMJJ_RS08495	0.61	+1.4
1,563,310	+		MMJJ_RS08495	0.61	-0.2
1,563,354	-		MMJJ_RS08495	0.65	-3.8
1,563,354	-		MMJJ_RS08495	0.65	-0.8
1,563,355	+		MMJJ_RS08495	0.65	+2.5