Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05050 and MMJJ_RS05055 overlap by 12 nucleotides MMJJ_RS05055 and MMJJ_RS05060 are separated by 69 nucleotides
MMJJ_RS05050: MMJJ_RS05050 - CPBP family intramembrane metalloprotease, at 938,123 to 939,091
_RS05050
MMJJ_RS05055: MMJJ_RS05055 - hypothetical protein, at 939,080 to 939,436
_RS05055
MMJJ_RS05060: MMJJ_RS05060 - argininosuccinate synthase, at 939,506 to 940,699
_RS05060
Position (kb) 939
940 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 938.108 kb on - strand at 938.166 kb on - strand at 938.167 kb on + strand at 938.170 kb on - strand at 938.170 kb on - strand at 938.170 kb on - strand at 938.171 kb on + strand at 938.171 kb on + strand at 938.172 kb on - strand at 938.172 kb on - strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.173 kb on + strand at 938.175 kb on + strand at 938.212 kb on - strand at 938.237 kb on + strand, within MMJJ_RS05050 at 938.237 kb on + strand, within MMJJ_RS05050 at 938.237 kb on + strand, within MMJJ_RS05050 at 938.253 kb on - strand, within MMJJ_RS05050 at 938.276 kb on - strand, within MMJJ_RS05050 at 938.277 kb on + strand, within MMJJ_RS05050 at 938.277 kb on + strand, within MMJJ_RS05050 at 938.277 kb on + strand, within MMJJ_RS05050 at 938.282 kb on + strand, within MMJJ_RS05050 at 938.282 kb on + strand, within MMJJ_RS05050 at 938.297 kb on - strand, within MMJJ_RS05050 at 938.298 kb on + strand, within MMJJ_RS05050 at 938.318 kb on - strand, within MMJJ_RS05050 at 938.319 kb on + strand, within MMJJ_RS05050 at 938.443 kb on - strand, within MMJJ_RS05050 at 938.443 kb on - strand, within MMJJ_RS05050 at 938.443 kb on - strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.444 kb on + strand, within MMJJ_RS05050 at 938.448 kb on + strand, within MMJJ_RS05050 at 938.448 kb on + strand, within MMJJ_RS05050 at 938.494 kb on - strand, within MMJJ_RS05050 at 938.494 kb on - strand, within MMJJ_RS05050 at 938.494 kb on - strand, within MMJJ_RS05050 at 938.494 kb on - strand, within MMJJ_RS05050 at 938.494 kb on - strand, within MMJJ_RS05050 at 938.495 kb on + strand, within MMJJ_RS05050 at 938.495 kb on + strand, within MMJJ_RS05050 at 938.496 kb on - strand, within MMJJ_RS05050 at 938.497 kb on + strand, within MMJJ_RS05050 at 938.517 kb on - strand, within MMJJ_RS05050 at 938.523 kb on - strand, within MMJJ_RS05050 at 938.527 kb on + strand, within MMJJ_RS05050 at 938.527 kb on + strand, within MMJJ_RS05050 at 938.550 kb on - strand, within MMJJ_RS05050 at 938.551 kb on + strand, within MMJJ_RS05050 at 938.557 kb on + strand, within MMJJ_RS05050 at 938.562 kb on + strand, within MMJJ_RS05050 at 938.577 kb on - strand, within MMJJ_RS05050 at 938.611 kb on - strand, within MMJJ_RS05050 at 938.615 kb on + strand, within MMJJ_RS05050 at 938.629 kb on + strand, within MMJJ_RS05050 at 938.644 kb on + strand, within MMJJ_RS05050 at 938.692 kb on - strand, within MMJJ_RS05050 at 938.692 kb on - strand, within MMJJ_RS05050 at 938.693 kb on + strand, within MMJJ_RS05050 at 938.693 kb on + strand, within MMJJ_RS05050 at 938.717 kb on + strand, within MMJJ_RS05050 at 938.718 kb on - strand, within MMJJ_RS05050 at 938.718 kb on - strand, within MMJJ_RS05050 at 938.719 kb on + strand, within MMJJ_RS05050 at 938.719 kb on + strand, within MMJJ_RS05050 at 938.719 kb on + strand, within MMJJ_RS05050 at 938.719 kb on + strand, within MMJJ_RS05050 at 938.719 kb on + strand at 938.720 kb on - strand, within MMJJ_RS05050 at 938.720 kb on - strand, within MMJJ_RS05050 at 938.720 kb on - strand, within MMJJ_RS05050 at 938.721 kb on + strand, within MMJJ_RS05050 at 938.721 kb on + strand, within MMJJ_RS05050 at 938.721 kb on + strand, within MMJJ_RS05050 at 938.721 kb on + strand, within MMJJ_RS05050 at 938.758 kb on - strand, within MMJJ_RS05050 at 938.759 kb on + strand, within MMJJ_RS05050 at 938.759 kb on + strand, within MMJJ_RS05050 at 938.759 kb on + strand, within MMJJ_RS05050 at 938.805 kb on - strand, within MMJJ_RS05050 at 938.805 kb on - strand, within MMJJ_RS05050 at 938.805 kb on - strand, within MMJJ_RS05050 at 938.806 kb on + strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.809 kb on - strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.810 kb on + strand, within MMJJ_RS05050 at 938.814 kb on - strand, within MMJJ_RS05050 at 938.830 kb on - strand, within MMJJ_RS05050 at 938.831 kb on + strand, within MMJJ_RS05050 at 938.839 kb on + strand, within MMJJ_RS05050 at 938.844 kb on - strand, within MMJJ_RS05050 at 938.845 kb on + strand, within MMJJ_RS05050 at 938.862 kb on - strand, within MMJJ_RS05050 at 938.926 kb on - strand, within MMJJ_RS05050 at 938.934 kb on - strand, within MMJJ_RS05050 at 938.935 kb on + strand, within MMJJ_RS05050 at 938.961 kb on + strand, within MMJJ_RS05050 at 938.982 kb on - strand, within MMJJ_RS05050 at 938.988 kb on - strand, within MMJJ_RS05050 at 938.989 kb on + strand, within MMJJ_RS05050 at 938.992 kb on - strand, within MMJJ_RS05050 at 939.034 kb on - strand at 939.035 kb on + strand at 939.043 kb on - strand at 939.150 kb on - strand, within MMJJ_RS05055 at 939.151 kb on + strand, within MMJJ_RS05055 at 939.184 kb on - strand, within MMJJ_RS05055 at 939.184 kb on - strand, within MMJJ_RS05055 at 939.185 kb on + strand, within MMJJ_RS05055 at 939.185 kb on + strand, within MMJJ_RS05055 at 939.260 kb on + strand, within MMJJ_RS05055 at 939.276 kb on - strand, within MMJJ_RS05055 at 939.278 kb on - strand, within MMJJ_RS05055 at 939.278 kb on - strand, within MMJJ_RS05055 at 939.278 kb on - strand, within MMJJ_RS05055 at 939.278 kb on - strand, within MMJJ_RS05055 at 939.278 kb on - strand, within MMJJ_RS05055 at 939.279 kb on + strand, within MMJJ_RS05055 at 939.279 kb on + strand, within MMJJ_RS05055 at 939.279 kb on + strand, within MMJJ_RS05055 at 939.325 kb on - strand, within MMJJ_RS05055 at 939.325 kb on - strand, within MMJJ_RS05055 at 939.325 kb on - strand, within MMJJ_RS05055 at 939.326 kb on + strand, within MMJJ_RS05055 at 939.326 kb on + strand, within MMJJ_RS05055 at 939.377 kb on - strand, within MMJJ_RS05055 at 939.408 kb on + strand at 939.412 kb on - strand at 939.413 kb on + strand at 939.440 kb on + strand at 939.529 kb on + strand at 939.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 938,108 - -3.2 938,166 - -1.7 938,167 + +0.8 938,170 - +2.1 938,170 - -2.2 938,170 - -3.5 938,171 + +3.6 938,171 + +1.6 938,172 - -0.1 938,172 - +1.7 938,173 + +2.6 938,173 + -0.0 938,173 + -3.0 938,173 + +1.5 938,173 + -0.5 938,173 + -0.7 938,173 + +1.9 938,175 + +3.1 938,212 - -4.4 938,237 + MMJJ_RS05050 0.12 -0.2 938,237 + MMJJ_RS05050 0.12 +0.8 938,237 + MMJJ_RS05050 0.12 -2.6 938,253 - MMJJ_RS05050 0.13 -0.5 938,276 - MMJJ_RS05050 0.16 -2.8 938,277 + MMJJ_RS05050 0.16 -0.1 938,277 + MMJJ_RS05050 0.16 +3.5 938,277 + MMJJ_RS05050 0.16 -2.1 938,282 + MMJJ_RS05050 0.16 -0.5 938,282 + MMJJ_RS05050 0.16 -1.1 938,297 - MMJJ_RS05050 0.18 +1.8 938,298 + MMJJ_RS05050 0.18 +0.3 938,318 - MMJJ_RS05050 0.20 +0.0 938,319 + MMJJ_RS05050 0.20 -0.8 938,443 - MMJJ_RS05050 0.33 +1.6 938,443 - MMJJ_RS05050 0.33 -1.5 938,443 - MMJJ_RS05050 0.33 -1.2 938,444 + MMJJ_RS05050 0.33 -3.0 938,444 + MMJJ_RS05050 0.33 +0.5 938,444 + MMJJ_RS05050 0.33 -3.4 938,444 + MMJJ_RS05050 0.33 +1.5 938,444 + MMJJ_RS05050 0.33 -3.4 938,444 + MMJJ_RS05050 0.33 +1.0 938,448 + MMJJ_RS05050 0.34 -2.2 938,448 + MMJJ_RS05050 0.34 -2.8 938,494 - MMJJ_RS05050 0.38 +0.3 938,494 - MMJJ_RS05050 0.38 -0.8 938,494 - MMJJ_RS05050 0.38 +0.9 938,494 - MMJJ_RS05050 0.38 +0.2 938,494 - MMJJ_RS05050 0.38 +1.6 938,495 + MMJJ_RS05050 0.38 +1.3 938,495 + MMJJ_RS05050 0.38 -4.0 938,496 - MMJJ_RS05050 0.38 +1.8 938,497 + MMJJ_RS05050 0.39 +1.7 938,517 - MMJJ_RS05050 0.41 -2.0 938,523 - MMJJ_RS05050 0.41 -2.5 938,527 + MMJJ_RS05050 0.42 -2.4 938,527 + MMJJ_RS05050 0.42 +2.2 938,550 - MMJJ_RS05050 0.44 -2.4 938,551 + MMJJ_RS05050 0.44 -2.5 938,557 + MMJJ_RS05050 0.45 +4.6 938,562 + MMJJ_RS05050 0.45 +2.1 938,577 - MMJJ_RS05050 0.47 -3.4 938,611 - MMJJ_RS05050 0.50 -0.1 938,615 + MMJJ_RS05050 0.51 -0.8 938,629 + MMJJ_RS05050 0.52 -2.8 938,644 + MMJJ_RS05050 0.54 -2.6 938,692 - MMJJ_RS05050 0.59 -0.2 938,692 - MMJJ_RS05050 0.59 +1.4 938,693 + MMJJ_RS05050 0.59 +2.5 938,693 + MMJJ_RS05050 0.59 +1.7 938,717 + MMJJ_RS05050 0.61 -0.5 938,718 - MMJJ_RS05050 0.61 -2.5 938,718 - MMJJ_RS05050 0.61 -2.6 938,719 + MMJJ_RS05050 0.62 -2.6 938,719 + MMJJ_RS05050 0.62 -1.5 938,719 + MMJJ_RS05050 0.62 -0.8 938,719 + MMJJ_RS05050 0.62 +3.0 938,719 + +1.5 938,720 - MMJJ_RS05050 0.62 -0.4 938,720 - MMJJ_RS05050 0.62 -0.8 938,720 - MMJJ_RS05050 0.62 +0.3 938,721 + MMJJ_RS05050 0.62 +2.4 938,721 + MMJJ_RS05050 0.62 +0.6 938,721 + MMJJ_RS05050 0.62 -1.3 938,721 + MMJJ_RS05050 0.62 +2.3 938,758 - MMJJ_RS05050 0.66 +1.7 938,759 + MMJJ_RS05050 0.66 +1.2 938,759 + MMJJ_RS05050 0.66 -3.0 938,759 + MMJJ_RS05050 0.66 +1.1 938,805 - MMJJ_RS05050 0.70 +1.5 938,805 - MMJJ_RS05050 0.70 -2.4 938,805 - MMJJ_RS05050 0.70 -0.8 938,806 + MMJJ_RS05050 0.70 +0.6 938,809 - MMJJ_RS05050 0.71 -3.0 938,809 - MMJJ_RS05050 0.71 -0.6 938,809 - MMJJ_RS05050 0.71 -2.1 938,809 - MMJJ_RS05050 0.71 +0.4 938,809 - MMJJ_RS05050 0.71 -1.0 938,809 - MMJJ_RS05050 0.71 +2.2 938,810 + MMJJ_RS05050 0.71 +2.0 938,810 + MMJJ_RS05050 0.71 -2.0 938,810 + MMJJ_RS05050 0.71 -1.3 938,810 + MMJJ_RS05050 0.71 +2.1 938,810 + MMJJ_RS05050 0.71 -0.5 938,810 + MMJJ_RS05050 0.71 +2.3 938,814 - MMJJ_RS05050 0.71 -3.0 938,830 - MMJJ_RS05050 0.73 +2.5 938,831 + MMJJ_RS05050 0.73 -1.2 938,839 + MMJJ_RS05050 0.74 -2.3 938,844 - MMJJ_RS05050 0.74 +0.9 938,845 + MMJJ_RS05050 0.75 +0.5 938,862 - MMJJ_RS05050 0.76 -4.6 938,926 - MMJJ_RS05050 0.83 -0.7 938,934 - MMJJ_RS05050 0.84 +1.9 938,935 + MMJJ_RS05050 0.84 -0.8 938,961 + MMJJ_RS05050 0.86 -1.3 938,982 - MMJJ_RS05050 0.89 +3.3 938,988 - MMJJ_RS05050 0.89 -2.6 938,989 + MMJJ_RS05050 0.89 +1.2 938,992 - MMJJ_RS05050 0.90 -1.2 939,034 - +0.5 939,035 + -1.7 939,043 - -0.9 939,150 - MMJJ_RS05055 0.20 -1.8 939,151 + MMJJ_RS05055 0.20 -0.9 939,184 - MMJJ_RS05055 0.29 +2.3 939,184 - MMJJ_RS05055 0.29 +1.8 939,185 + MMJJ_RS05055 0.29 -1.3 939,185 + MMJJ_RS05055 0.29 -2.1 939,260 + MMJJ_RS05055 0.50 -0.1 939,276 - MMJJ_RS05055 0.55 -0.8 939,278 - MMJJ_RS05055 0.55 -0.8 939,278 - MMJJ_RS05055 0.55 -2.8 939,278 - MMJJ_RS05055 0.55 -0.0 939,278 - MMJJ_RS05055 0.55 -0.9 939,278 - MMJJ_RS05055 0.55 -0.9 939,279 + MMJJ_RS05055 0.56 +0.7 939,279 + MMJJ_RS05055 0.56 -3.3 939,279 + MMJJ_RS05055 0.56 +3.1 939,325 - MMJJ_RS05055 0.69 -2.0 939,325 - MMJJ_RS05055 0.69 -0.4 939,325 - MMJJ_RS05055 0.69 -3.1 939,326 + MMJJ_RS05055 0.69 -1.3 939,326 + MMJJ_RS05055 0.69 -0.5 939,377 - MMJJ_RS05055 0.83 -3.6 939,408 + +0.3 939,412 - -1.9 939,413 + +0.9 939,440 + -2.7 939,529 + -0.5 939,621 - -2.1
Or see this region's nucleotide sequence