Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04330

Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04325 and MMJJ_RS04330 overlap by 20 nucleotidesMMJJ_RS04330 and MMJJ_RS04335 are separated by 1 nucleotides MMJJ_RS04325: MMJJ_RS04325 - tyrosine-type recombinase/integrase, at 807,960 to 808,928 _RS04325 MMJJ_RS04330: MMJJ_RS04330 - DUF2540 domain-containing protein, at 808,909 to 809,186 _RS04330 MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212 _RS04335 Position (kb) 808 809 810Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 807.984 kb on - strandat 808.018 kb on - strandat 808.140 kb on + strand, within MMJJ_RS04325at 808.200 kb on - strand, within MMJJ_RS04325at 808.274 kb on + strand, within MMJJ_RS04325at 808.281 kb on + strand, within MMJJ_RS04325at 808.290 kb on - strand, within MMJJ_RS04325at 808.347 kb on + strand, within MMJJ_RS04325at 808.352 kb on - strand, within MMJJ_RS04325at 808.374 kb on + strand, within MMJJ_RS04325at 808.374 kb on + strand, within MMJJ_RS04325at 808.450 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.462 kb on + strand, within MMJJ_RS04325at 808.490 kb on - strand, within MMJJ_RS04325at 808.491 kb on + strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.500 kb on - strand, within MMJJ_RS04325at 808.524 kb on - strand, within MMJJ_RS04325at 808.525 kb on + strand, within MMJJ_RS04325at 808.526 kb on - strand, within MMJJ_RS04325at 808.527 kb on + strand, within MMJJ_RS04325at 808.542 kb on - strand, within MMJJ_RS04325at 808.620 kb on + strand, within MMJJ_RS04325at 808.690 kb on - strand, within MMJJ_RS04325at 808.704 kb on - strand, within MMJJ_RS04325at 808.902 kb on - strandat 808.911 kb on + strandat 808.962 kb on - strand, within MMJJ_RS04330at 808.962 kb on - strand, within MMJJ_RS04330at 808.963 kb on + strand, within MMJJ_RS04330at 808.966 kb on + strand, within MMJJ_RS04330at 808.969 kb on - strand, within MMJJ_RS04330at 808.969 kb on - strandat 808.970 kb on + strand, within MMJJ_RS04330at 808.970 kb on + strand, within MMJJ_RS04330at 808.970 kb on + strand, within MMJJ_RS04330at 808.974 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.094 kb on - strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on + strand, within MMJJ_RS04330at 809.095 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.098 kb on - strand, within MMJJ_RS04330at 809.099 kb on + strand, within MMJJ_RS04330at 809.099 kb on + strand, within MMJJ_RS04330at 809.125 kb on - strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.126 kb on + strand, within MMJJ_RS04330at 809.129 kb on + strand, within MMJJ_RS04330at 809.159 kb on - strandat 809.160 kb on + strandat 809.167 kb on + strandat 809.167 kb on + strandat 809.261 kb on + strandat 809.267 kb on + strandat 809.287 kb on + strandat 809.330 kb on + strandat 809.362 kb on - strandat 809.362 kb on - strandat 809.364 kb on - strandat 809.367 kb on - strandat 809.373 kb on + strandat 809.384 kb on + strandat 809.468 kb on + strand, within MMJJ_RS04335at 809.486 kb on - strand, within MMJJ_RS04335at 809.486 kb on - strand, within MMJJ_RS04335at 809.487 kb on + strand, within MMJJ_RS04335at 809.487 kb on + strand, within MMJJ_RS04335at 809.518 kb on - strand, within MMJJ_RS04335at 809.608 kb on - strand, within MMJJ_RS04335at 809.619 kb on + strand, within MMJJ_RS04335at 809.632 kb on - strand, within MMJJ_RS04335at 809.640 kb on - strand, within MMJJ_RS04335at 809.679 kb on + strand, within MMJJ_RS04335at 809.679 kb on + strand, within MMJJ_RS04335at 809.688 kb on + strand, within MMJJ_RS04335at 809.717 kb on + strand, within MMJJ_RS04335at 809.774 kb on - strand, within MMJJ_RS04335at 809.797 kb on + strand, within MMJJ_RS04335at 809.873 kb on + strand, within MMJJ_RS04335at 809.940 kb on - strand, within MMJJ_RS04335at 810.004 kb on - strand, within MMJJ_RS04335at 810.005 kb on + strand, within MMJJ_RS04335at 810.005 kb on + strand, within MMJJ_RS04335at 810.005 kb on + strand, within MMJJ_RS04335at 810.033 kb on - strand, within MMJJ_RS04335at 810.035 kb on - strand, within MMJJ_RS04335at 810.035 kb on - strand, within MMJJ_RS04335at 810.035 kb on - strand, within MMJJ_RS04335at 810.036 kb on + strand, within MMJJ_RS04335at 810.097 kb on - strand, within MMJJ_RS04335at 810.098 kb on + strand, within MMJJ_RS04335at 810.103 kb on - strand, within MMJJ_RS04335at 810.104 kb on + strand, within MMJJ_RS04335at 810.115 kb on - strand, within MMJJ_RS04335at 810.115 kb on - strand, within MMJJ_RS04335at 810.115 kb on - strand, within MMJJ_RS04335at 810.116 kb on + strand, within MMJJ_RS04335at 810.126 kb on - strand, within MMJJ_RS04335

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM
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807,984 - +1.2
808,018 - -3.2
808,140 + MMJJ_RS04325 0.19 +1.6
808,200 - MMJJ_RS04325 0.25 -0.0
808,274 + MMJJ_RS04325 0.32 -2.1
808,281 + MMJJ_RS04325 0.33 +0.6
808,290 - MMJJ_RS04325 0.34 +0.2
808,347 + MMJJ_RS04325 0.40 -1.7
808,352 - MMJJ_RS04325 0.40 +1.1
808,374 + MMJJ_RS04325 0.43 +2.1
808,374 + MMJJ_RS04325 0.43 -1.3
808,450 + MMJJ_RS04325 0.51 +3.2
808,462 + MMJJ_RS04325 0.52 -1.8
808,462 + MMJJ_RS04325 0.52 +1.0
808,462 + MMJJ_RS04325 0.52 +2.6
808,490 - MMJJ_RS04325 0.55 +3.2
808,491 + MMJJ_RS04325 0.55 -2.4
808,500 - MMJJ_RS04325 0.56 +0.8
808,500 - MMJJ_RS04325 0.56 +1.8
808,500 - MMJJ_RS04325 0.56 -0.7
808,524 - MMJJ_RS04325 0.58 +1.8
808,525 + MMJJ_RS04325 0.58 +2.5
808,526 - MMJJ_RS04325 0.58 -0.3
808,527 + MMJJ_RS04325 0.59 -1.5
808,542 - MMJJ_RS04325 0.60 -2.1
808,620 + MMJJ_RS04325 0.68 +5.1
808,690 - MMJJ_RS04325 0.75 +5.0
808,704 - MMJJ_RS04325 0.77 -0.6
808,902 - -0.1
808,911 + +1.5
808,962 - MMJJ_RS04330 0.19 +2.6
808,962 - MMJJ_RS04330 0.19 +4.1
808,963 + MMJJ_RS04330 0.19 -0.1
808,966 + MMJJ_RS04330 0.21 -0.7
808,969 - MMJJ_RS04330 0.22 -1.1
808,969 - +0.5
808,970 + MMJJ_RS04330 0.22 +1.7
808,970 + MMJJ_RS04330 0.22 -0.1
808,970 + MMJJ_RS04330 0.22 -1.3
808,974 - MMJJ_RS04330 0.23 +1.0
809,094 - MMJJ_RS04330 0.67 +0.0
809,094 - MMJJ_RS04330 0.67 +1.2
809,094 - MMJJ_RS04330 0.67 -1.0
809,094 - MMJJ_RS04330 0.67 -1.0
809,094 - MMJJ_RS04330 0.67 +0.6
809,094 - MMJJ_RS04330 0.67 -1.1
809,094 - MMJJ_RS04330 0.67 +1.6
809,095 + MMJJ_RS04330 0.67 -1.2
809,095 + MMJJ_RS04330 0.67 -0.9
809,095 + MMJJ_RS04330 0.67 -1.6
809,095 + MMJJ_RS04330 0.67 -2.6
809,095 + MMJJ_RS04330 0.67 +0.4
809,095 + MMJJ_RS04330 0.67 -3.3
809,095 + MMJJ_RS04330 0.67 -0.4
809,095 - MMJJ_RS04330 0.67 +1.7
809,098 - MMJJ_RS04330 0.68 +1.5
809,098 - MMJJ_RS04330 0.68 -0.9
809,098 - MMJJ_RS04330 0.68 -2.8
809,098 - MMJJ_RS04330 0.68 -0.5
809,099 + MMJJ_RS04330 0.68 -2.2
809,099 + MMJJ_RS04330 0.68 +1.3
809,125 - MMJJ_RS04330 0.78 +1.2
809,126 + MMJJ_RS04330 0.78 -0.1
809,126 + MMJJ_RS04330 0.78 -1.2
809,126 + MMJJ_RS04330 0.78 +1.7
809,126 + MMJJ_RS04330 0.78 -1.1
809,126 + MMJJ_RS04330 0.78 -0.5
809,129 + MMJJ_RS04330 0.79 -0.5
809,159 - -1.3
809,160 + +1.0
809,167 + -1.5
809,167 + -2.4
809,261 + +1.1
809,267 + -0.9
809,287 + -3.7
809,330 + -2.3
809,362 - +1.2
809,362 - +0.5
809,364 - -0.5
809,367 - -0.5
809,373 + -3.9
809,384 + -2.1
809,468 + MMJJ_RS04335 0.14 -0.9
809,486 - MMJJ_RS04335 0.15 +0.6
809,486 - MMJJ_RS04335 0.15 -0.2
809,487 + MMJJ_RS04335 0.15 +0.7
809,487 + MMJJ_RS04335 0.15 +2.5
809,518 - MMJJ_RS04335 0.16 +2.7
809,608 - MMJJ_RS04335 0.21 +2.7
809,619 + MMJJ_RS04335 0.21 +2.5
809,632 - MMJJ_RS04335 0.22 -2.4
809,640 - MMJJ_RS04335 0.22 -1.2
809,679 + MMJJ_RS04335 0.24 -3.2
809,679 + MMJJ_RS04335 0.24 -0.5
809,688 + MMJJ_RS04335 0.25 +1.9
809,717 + MMJJ_RS04335 0.26 -0.4
809,774 - MMJJ_RS04335 0.29 +3.0
809,797 + MMJJ_RS04335 0.30 +1.5
809,873 + MMJJ_RS04335 0.34 +0.9
809,940 - MMJJ_RS04335 0.37 -1.0
810,004 - MMJJ_RS04335 0.40 -2.2
810,005 + MMJJ_RS04335 0.40 -2.1
810,005 + MMJJ_RS04335 0.40 +2.6
810,005 + MMJJ_RS04335 0.40 -0.2
810,033 - MMJJ_RS04335 0.42 +1.0
810,035 - MMJJ_RS04335 0.42 +0.8
810,035 - MMJJ_RS04335 0.42 +2.9
810,035 - MMJJ_RS04335 0.42 +0.5
810,036 + MMJJ_RS04335 0.42 +0.6
810,097 - MMJJ_RS04335 0.45 -1.9
810,098 + MMJJ_RS04335 0.45 -1.1
810,103 - MMJJ_RS04335 0.45 +1.2
810,104 + MMJJ_RS04335 0.45 -0.1
810,115 - MMJJ_RS04335 0.46 -0.1
810,115 - MMJJ_RS04335 0.46 +3.3
810,115 - MMJJ_RS04335 0.46 +1.8
810,116 + MMJJ_RS04335 0.46 -0.8
810,126 - MMJJ_RS04335 0.46 -3.2

Or see this region's nucleotide sequence