Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02110 and MMJJ_RS02115 are separated by 11 nucleotides MMJJ_RS02115 and MMJJ_RS02120 are separated by 61 nucleotides MMJJ_RS02120 and MMJJ_RS02125 are separated by 118 nucleotides MMJJ_RS02125 and MMJJ_RS02130 are separated by 9 nucleotides MMJJ_RS02130 and MMJJ_RS02135 are separated by 1 nucleotides
MMJJ_RS02110: MMJJ_RS02110 - carboxymuconolactone decarboxylase family protein, at 403,551 to 403,985
_RS02110
MMJJ_RS02115: MMJJ_RS02115 - class I SAM-dependent methyltransferase family protein, at 403,997 to 404,758
_RS02115
MMJJ_RS02120: MMJJ_RS02120 - DJ-1/PfpI family protein, at 404,820 to 405,335
_RS02120
MMJJ_RS02125: MMJJ_RS02125 - hypothetical protein, at 405,454 to 405,750
_RS02125
MMJJ_RS02130: MMJJ_RS02130 - UPF0146 family protein, at 405,760 to 406,173
_RS02130
MMJJ_RS02135: MMJJ_RS02135 - TatD family hydrolase, at 406,175 to 407,017
_RS02135
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 403.823 kb on + strand, within MMJJ_RS02110 at 403.871 kb on - strand, within MMJJ_RS02110 at 403.872 kb on + strand, within MMJJ_RS02110 at 403.920 kb on + strand, within MMJJ_RS02110 at 403.928 kb on + strand, within MMJJ_RS02110 at 403.950 kb on + strand at 404.024 kb on - strand at 404.024 kb on - strand at 404.050 kb on + strand at 404.066 kb on + strand at 404.072 kb on + strand at 404.072 kb on + strand at 404.074 kb on + strand, within MMJJ_RS02115 at 404.191 kb on - strand, within MMJJ_RS02115 at 404.324 kb on - strand, within MMJJ_RS02115 at 404.379 kb on - strand, within MMJJ_RS02115 at 404.380 kb on + strand, within MMJJ_RS02115 at 404.444 kb on + strand, within MMJJ_RS02115 at 404.450 kb on - strand, within MMJJ_RS02115 at 404.451 kb on + strand, within MMJJ_RS02115 at 404.477 kb on + strand, within MMJJ_RS02115 at 404.480 kb on - strand, within MMJJ_RS02115 at 404.520 kb on + strand, within MMJJ_RS02115 at 404.528 kb on - strand, within MMJJ_RS02115 at 404.529 kb on + strand, within MMJJ_RS02115 at 404.626 kb on - strand, within MMJJ_RS02115 at 404.627 kb on + strand, within MMJJ_RS02115 at 404.627 kb on + strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.628 kb on - strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.629 kb on + strand, within MMJJ_RS02115 at 404.632 kb on - strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.633 kb on + strand, within MMJJ_RS02115 at 404.636 kb on + strand, within MMJJ_RS02115 at 404.643 kb on + strand, within MMJJ_RS02115 at 404.647 kb on - strand, within MMJJ_RS02115 at 404.647 kb on - strand, within MMJJ_RS02115 at 404.665 kb on - strand, within MMJJ_RS02115 at 404.769 kb on - strand at 404.775 kb on + strand at 404.777 kb on + strand at 404.785 kb on + strand at 404.817 kb on - strand at 404.818 kb on + strand at 404.818 kb on + strand at 404.821 kb on - strand at 404.889 kb on - strand, within MMJJ_RS02120 at 405.062 kb on - strand, within MMJJ_RS02120 at 405.107 kb on + strand, within MMJJ_RS02120 at 405.134 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.138 kb on - strand, within MMJJ_RS02120 at 405.139 kb on + strand, within MMJJ_RS02120 at 405.139 kb on + strand, within MMJJ_RS02120 at 405.325 kb on + strand at 405.361 kb on + strand at 405.361 kb on + strand at 405.364 kb on - strand at 405.364 kb on - strand at 405.365 kb on + strand at 405.365 kb on + strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.370 kb on - strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.371 kb on + strand at 405.372 kb on - strand at 405.372 kb on - strand at 405.373 kb on + strand at 405.373 kb on + strand at 405.374 kb on - strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.375 kb on + strand at 405.379 kb on - strand at 405.385 kb on + strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.398 kb on - strand at 405.426 kb on - strand at 405.427 kb on + strand at 405.442 kb on + strand at 405.513 kb on - strand, within MMJJ_RS02125 at 405.513 kb on - strand, within MMJJ_RS02125 at 405.513 kb on - strand, within MMJJ_RS02125 at 405.514 kb on + strand, within MMJJ_RS02125 at 405.583 kb on - strand, within MMJJ_RS02125 at 405.594 kb on - strand, within MMJJ_RS02125 at 405.749 kb on + strand at 405.779 kb on + strand at 405.779 kb on + strand at 405.782 kb on - strand at 405.818 kb on - strand at 405.903 kb on - strand, within MMJJ_RS02130 at 406.172 kb on + strand at 406.231 kb on + strand at 406.294 kb on - strand, within MMJJ_RS02135 at 406.295 kb on + strand, within MMJJ_RS02135 at 406.304 kb on + strand, within MMJJ_RS02135 at 406.315 kb on - strand, within MMJJ_RS02135 at 406.315 kb on - strand, within MMJJ_RS02135 at 406.316 kb on + strand, within MMJJ_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 403,823 + MMJJ_RS02110 0.63 -0.0 403,871 - MMJJ_RS02110 0.74 -3.2 403,872 + MMJJ_RS02110 0.74 +1.1 403,920 + MMJJ_RS02110 0.85 -1.3 403,928 + MMJJ_RS02110 0.87 +2.8 403,950 + -3.4 404,024 - +0.3 404,024 - +2.5 404,050 + +0.6 404,066 + -1.3 404,072 + -0.2 404,072 + -3.5 404,074 + MMJJ_RS02115 0.10 +2.2 404,191 - MMJJ_RS02115 0.25 +0.7 404,324 - MMJJ_RS02115 0.43 -1.6 404,379 - MMJJ_RS02115 0.50 +0.7 404,380 + MMJJ_RS02115 0.50 -0.3 404,444 + MMJJ_RS02115 0.59 -2.4 404,450 - MMJJ_RS02115 0.59 +0.5 404,451 + MMJJ_RS02115 0.60 -2.2 404,477 + MMJJ_RS02115 0.63 -1.5 404,480 - MMJJ_RS02115 0.63 +0.3 404,520 + MMJJ_RS02115 0.69 -2.0 404,528 - MMJJ_RS02115 0.70 -2.6 404,529 + MMJJ_RS02115 0.70 +1.7 404,626 - MMJJ_RS02115 0.83 -1.6 404,627 + MMJJ_RS02115 0.83 -2.0 404,627 + MMJJ_RS02115 0.83 +2.1 404,628 - MMJJ_RS02115 0.83 -0.2 404,628 - MMJJ_RS02115 0.83 -1.8 404,628 - MMJJ_RS02115 0.83 +2.4 404,628 - MMJJ_RS02115 0.83 +0.2 404,628 - MMJJ_RS02115 0.83 -1.2 404,628 - MMJJ_RS02115 0.83 -2.3 404,628 - MMJJ_RS02115 0.83 -2.8 404,628 - MMJJ_RS02115 0.83 +0.3 404,628 - MMJJ_RS02115 0.83 -0.7 404,628 - MMJJ_RS02115 0.83 -1.4 404,629 + MMJJ_RS02115 0.83 +2.0 404,629 + MMJJ_RS02115 0.83 -1.0 404,629 + MMJJ_RS02115 0.83 -2.5 404,632 - MMJJ_RS02115 0.83 -1.1 404,633 + MMJJ_RS02115 0.83 +0.7 404,633 + MMJJ_RS02115 0.83 +2.2 404,633 + MMJJ_RS02115 0.83 +4.9 404,633 + MMJJ_RS02115 0.83 -0.3 404,636 + MMJJ_RS02115 0.84 +1.2 404,643 + MMJJ_RS02115 0.85 +2.7 404,647 - MMJJ_RS02115 0.85 +0.7 404,647 - MMJJ_RS02115 0.85 -0.3 404,665 - MMJJ_RS02115 0.88 -1.3 404,769 - +0.5 404,775 + -1.5 404,777 + -1.0 404,785 + +1.4 404,817 - -1.2 404,818 + -3.2 404,818 + -1.7 404,821 - -0.7 404,889 - MMJJ_RS02120 0.13 -0.5 405,062 - MMJJ_RS02120 0.47 +4.8 405,107 + MMJJ_RS02120 0.56 +3.0 405,134 - MMJJ_RS02120 0.61 -1.5 405,138 - MMJJ_RS02120 0.62 +2.1 405,138 - MMJJ_RS02120 0.62 +2.6 405,138 - MMJJ_RS02120 0.62 -1.4 405,139 + MMJJ_RS02120 0.62 +3.0 405,139 + MMJJ_RS02120 0.62 +2.2 405,325 + -2.4 405,361 + -2.4 405,361 + +2.0 405,364 - +2.8 405,364 - -1.0 405,365 + +2.6 405,365 + -3.7 405,370 - -0.9 405,370 - +0.6 405,370 - -2.5 405,370 - -1.0 405,370 - +1.1 405,370 - +0.5 405,370 - -1.3 405,370 - +2.5 405,370 - +0.4 405,370 - -1.5 405,370 - -1.7 405,370 - -2.4 405,370 - +0.4 405,371 + -2.4 405,371 + -0.3 405,371 + +1.7 405,371 + -1.6 405,371 + +0.6 405,371 + -0.6 405,371 + -1.0 405,371 + -0.5 405,371 + +3.4 405,371 + +0.5 405,371 + -0.2 405,371 + +0.5 405,371 + -0.2 405,371 + +0.6 405,371 + -0.3 405,371 + -1.7 405,371 + +1.9 405,371 + -2.8 405,372 - +1.8 405,372 - +0.4 405,373 + -3.1 405,373 + +1.3 405,374 - +1.0 405,375 + +2.1 405,375 + -0.5 405,375 + -3.6 405,375 + -1.1 405,379 - +0.5 405,385 + -0.3 405,398 - +2.2 405,398 - +0.7 405,398 - +2.3 405,398 - -0.9 405,426 - +3.0 405,427 + +1.4 405,442 + -0.4 405,513 - MMJJ_RS02125 0.20 -1.5 405,513 - MMJJ_RS02125 0.20 +3.9 405,513 - MMJJ_RS02125 0.20 +0.9 405,514 + MMJJ_RS02125 0.20 +2.0 405,583 - MMJJ_RS02125 0.43 -2.4 405,594 - MMJJ_RS02125 0.47 -0.7 405,749 + -1.7 405,779 + -3.0 405,779 + -1.7 405,782 - +0.3 405,818 - +0.3 405,903 - MMJJ_RS02130 0.35 -0.3 406,172 + -3.4 406,231 + +0.5 406,294 - MMJJ_RS02135 0.14 +3.0 406,295 + MMJJ_RS02135 0.14 -0.3 406,304 + MMJJ_RS02135 0.15 +3.4 406,315 - MMJJ_RS02135 0.17 -1.7 406,315 - MMJJ_RS02135 0.17 -1.0 406,316 + MMJJ_RS02135 0.17 +0.6
Or see this region's nucleotide sequence