Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01285 and MMJJ_RS01290 are separated by 38 nucleotides MMJJ_RS01290 and MMJJ_RS01300 are separated by 381 nucleotides MMJJ_RS01300 and MMJJ_RS01305 are separated by 12 nucleotides MMJJ_RS01305 and MMJJ_RS01310 are separated by 13 nucleotides
MMJJ_RS01285: MMJJ_RS01285 - CopG family ribbon-helix-helix protein, at 248,117 to 248,524
_RS01285
MMJJ_RS01290: MMJJ_RS01290 - hypothetical protein, at 248,563 to 248,913
_RS01290
MMJJ_RS01300: MMJJ_RS01300 - MarR family transcriptional regulator, at 249,295 to 249,831
_RS01300
MMJJ_RS01305: MMJJ_RS01305 - ACT domain-containing protein, at 249,844 to 250,269
_RS01305
MMJJ_RS01310: MMJJ_RS01310 - phenylacetate--CoA ligase, at 250,283 to 251,581
_RS01310
Position (kb) 249
250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 248.396 kb on - strand, within MMJJ_RS01285 at 248.456 kb on - strand, within MMJJ_RS01285 at 248.457 kb on + strand, within MMJJ_RS01285 at 248.514 kb on + strand at 248.541 kb on + strand at 248.544 kb on - strand at 248.549 kb on + strand at 248.579 kb on + strand at 248.665 kb on - strand, within MMJJ_RS01290 at 248.665 kb on - strand, within MMJJ_RS01290 at 248.667 kb on - strand, within MMJJ_RS01290 at 248.668 kb on + strand, within MMJJ_RS01290 at 248.713 kb on - strand, within MMJJ_RS01290 at 248.714 kb on + strand, within MMJJ_RS01290 at 248.735 kb on - strand, within MMJJ_RS01290 at 248.739 kb on - strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.746 kb on + strand, within MMJJ_RS01290 at 248.762 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.764 kb on - strand, within MMJJ_RS01290 at 248.774 kb on - strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.775 kb on + strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.776 kb on - strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.777 kb on + strand, within MMJJ_RS01290 at 248.788 kb on - strand, within MMJJ_RS01290 at 248.793 kb on + strand, within MMJJ_RS01290 at 248.805 kb on - strand, within MMJJ_RS01290 at 248.806 kb on + strand, within MMJJ_RS01290 at 248.882 kb on + strand at 248.893 kb on - strand at 248.893 kb on - strand at 248.894 kb on + strand at 248.936 kb on + strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.940 kb on - strand at 248.941 kb on + strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.943 kb on - strand at 248.944 kb on + strand at 248.944 kb on + strand at 248.945 kb on - strand at 248.945 kb on - strand at 248.946 kb on + strand at 248.958 kb on + strand at 248.958 kb on + strand at 248.963 kb on - strand at 248.963 kb on - strand at 249.004 kb on - strand at 249.013 kb on - strand at 249.017 kb on - strand at 249.025 kb on - strand at 249.025 kb on - strand at 249.065 kb on - strand at 249.065 kb on - strand at 249.074 kb on + strand at 249.094 kb on - strand at 249.132 kb on + strand at 249.137 kb on + strand at 249.140 kb on + strand at 249.151 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.153 kb on - strand at 249.154 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.171 kb on + strand at 249.210 kb on - strand at 249.268 kb on - strand at 249.269 kb on + strand at 249.270 kb on - strand at 249.276 kb on + strand at 249.281 kb on + strand at 249.281 kb on + strand at 249.314 kb on - strand at 249.314 kb on - strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.315 kb on + strand at 249.319 kb on - strand at 249.328 kb on - strand at 249.344 kb on - strand at 249.344 kb on - strand at 249.352 kb on + strand, within MMJJ_RS01300 at 249.352 kb on + strand, within MMJJ_RS01300 at 249.371 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.455 kb on - strand, within MMJJ_RS01300 at 249.499 kb on - strand, within MMJJ_RS01300 at 249.500 kb on + strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.502 kb on - strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.503 kb on + strand, within MMJJ_RS01300 at 249.530 kb on - strand, within MMJJ_RS01300 at 249.554 kb on - strand, within MMJJ_RS01300 at 249.555 kb on + strand, within MMJJ_RS01300 at 249.555 kb on + strand, within MMJJ_RS01300 at 249.595 kb on + strand, within MMJJ_RS01300 at 249.622 kb on + strand, within MMJJ_RS01300 at 249.626 kb on - strand, within MMJJ_RS01300 at 249.627 kb on + strand, within MMJJ_RS01300 at 249.643 kb on - strand, within MMJJ_RS01300 at 249.643 kb on - strand, within MMJJ_RS01300 at 249.716 kb on - strand, within MMJJ_RS01300 at 249.727 kb on - strand, within MMJJ_RS01300 at 249.728 kb on + strand, within MMJJ_RS01300 at 249.728 kb on + strand, within MMJJ_RS01300 at 249.732 kb on + strand, within MMJJ_RS01300 at 249.772 kb on + strand, within MMJJ_RS01300 at 249.775 kb on + strand, within MMJJ_RS01300 at 249.856 kb on - strand at 249.857 kb on + strand at 249.857 kb on + strand at 249.857 kb on + strand at 249.857 kb on + strand at 249.857 kb on + strand at 249.858 kb on - strand at 249.859 kb on + strand at 249.871 kb on - strand at 249.896 kb on + strand, within MMJJ_RS01305 at 249.898 kb on - strand, within MMJJ_RS01305 at 249.898 kb on - strand, within MMJJ_RS01305 at 249.898 kb on - strand, within MMJJ_RS01305 at 249.899 kb on + strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.970 kb on - strand, within MMJJ_RS01305 at 249.971 kb on + strand, within MMJJ_RS01305 at 249.971 kb on + strand, within MMJJ_RS01305 at 249.971 kb on + strand, within MMJJ_RS01305 at 249.974 kb on - strand, within MMJJ_RS01305 at 249.974 kb on - strand, within MMJJ_RS01305 at 249.974 kb on - strand, within MMJJ_RS01305 at 249.975 kb on + strand, within MMJJ_RS01305 at 249.975 kb on + strand, within MMJJ_RS01305 at 249.975 kb on + strand, within MMJJ_RS01305 at 249.975 kb on + strand, within MMJJ_RS01305 at 250.003 kb on - strand, within MMJJ_RS01305 at 250.005 kb on - strand, within MMJJ_RS01305 at 250.006 kb on + strand, within MMJJ_RS01305 at 250.006 kb on + strand, within MMJJ_RS01305 at 250.008 kb on - strand, within MMJJ_RS01305 at 250.009 kb on + strand, within MMJJ_RS01305 at 250.009 kb on + strand, within MMJJ_RS01305 at 250.009 kb on + strand, within MMJJ_RS01305 at 250.009 kb on + strand, within MMJJ_RS01305 at 250.045 kb on + strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.048 kb on - strand, within MMJJ_RS01305 at 250.049 kb on + strand, within MMJJ_RS01305 at 250.049 kb on + strand, within MMJJ_RS01305 at 250.049 kb on + strand, within MMJJ_RS01305 at 250.049 kb on + strand, within MMJJ_RS01305 at 250.049 kb on + strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.050 kb on - strand, within MMJJ_RS01305 at 250.051 kb on + strand, within MMJJ_RS01305 at 250.051 kb on + strand, within MMJJ_RS01305 at 250.051 kb on + strand, within MMJJ_RS01305 at 250.051 kb on + strand, within MMJJ_RS01305 at 250.054 kb on - strand, within MMJJ_RS01305 at 250.055 kb on + strand, within MMJJ_RS01305 at 250.084 kb on + strand, within MMJJ_RS01305 at 250.094 kb on + strand, within MMJJ_RS01305 at 250.210 kb on - strand, within MMJJ_RS01305 at 250.246 kb on - strand at 250.284 kb on - strand at 250.286 kb on - strand at 250.370 kb on - strand at 250.371 kb on + strand at 250.393 kb on - strand at 250.412 kb on - strand at 250.412 kb on - strand at 250.412 kb on - strand at 250.413 kb on + strand, within MMJJ_RS01310 at 250.499 kb on + strand, within MMJJ_RS01310 at 250.508 kb on - strand, within MMJJ_RS01310 at 250.512 kb on + strand, within MMJJ_RS01310 at 250.572 kb on + strand, within MMJJ_RS01310 at 250.587 kb on + strand, within MMJJ_RS01310 at 250.588 kb on - strand, within MMJJ_RS01310 at 250.588 kb on - strand, within MMJJ_RS01310 at 250.588 kb on - strand, within MMJJ_RS01310 at 250.593 kb on + strand, within MMJJ_RS01310 at 250.668 kb on + strand, within MMJJ_RS01310 at 250.697 kb on - strand, within MMJJ_RS01310 at 250.729 kb on - strand, within MMJJ_RS01310 at 250.729 kb on - strand, within MMJJ_RS01310 at 250.733 kb on - strand, within MMJJ_RS01310 at 250.734 kb on + strand, within MMJJ_RS01310 at 250.775 kb on + strand, within MMJJ_RS01310 at 250.787 kb on + strand, within MMJJ_RS01310
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium nitrite 0.416666666666667 mM remove 248,396 - MMJJ_RS01285 0.68 -0.1 248,456 - MMJJ_RS01285 0.83 -1.4 248,457 + MMJJ_RS01285 0.83 -4.2 248,514 + -1.3 248,541 + -1.4 248,544 - +0.5 248,549 + +2.7 248,579 + +0.6 248,665 - MMJJ_RS01290 0.29 +2.2 248,665 - MMJJ_RS01290 0.29 +1.3 248,667 - MMJJ_RS01290 0.30 +2.0 248,668 + MMJJ_RS01290 0.30 -2.3 248,713 - MMJJ_RS01290 0.43 +1.0 248,714 + MMJJ_RS01290 0.43 +0.8 248,735 - MMJJ_RS01290 0.49 -2.9 248,739 - MMJJ_RS01290 0.50 +1.0 248,746 + MMJJ_RS01290 0.52 +1.7 248,746 + MMJJ_RS01290 0.52 -1.6 248,762 - MMJJ_RS01290 0.57 -2.8 248,764 - MMJJ_RS01290 0.57 -1.2 248,764 - MMJJ_RS01290 0.57 -0.7 248,774 - MMJJ_RS01290 0.60 -1.8 248,775 + MMJJ_RS01290 0.60 +2.5 248,775 + MMJJ_RS01290 0.60 -1.6 248,776 - MMJJ_RS01290 0.61 -2.7 248,776 - MMJJ_RS01290 0.61 +1.1 248,776 - MMJJ_RS01290 0.61 -1.5 248,777 + MMJJ_RS01290 0.61 -4.1 248,777 + MMJJ_RS01290 0.61 -0.2 248,788 - MMJJ_RS01290 0.64 +0.6 248,793 + MMJJ_RS01290 0.66 -1.1 248,805 - MMJJ_RS01290 0.69 -0.8 248,806 + MMJJ_RS01290 0.69 -3.5 248,882 + -1.9 248,893 - +0.2 248,893 - -0.8 248,894 + +1.1 248,936 + -1.6 248,940 - +0.9 248,940 - -0.8 248,940 - +1.8 248,940 - -0.3 248,941 + +1.3 248,943 - +0.9 248,943 - -0.8 248,943 - +2.0 248,944 + -0.8 248,944 + +2.6 248,945 - -1.6 248,945 - -1.1 248,946 + -1.9 248,958 + +1.1 248,958 + -0.3 248,963 - -1.1 248,963 - +1.7 249,004 - +0.1 249,013 - -0.0 249,017 - +2.5 249,025 - +0.2 249,025 - +0.8 249,065 - +2.8 249,065 - -2.4 249,074 + -1.0 249,094 - +2.6 249,132 + +1.0 249,137 + +1.2 249,140 + +0.3 249,151 - -2.8 249,153 - -2.3 249,153 - -2.1 249,153 - -2.7 249,153 - +0.5 249,154 + -0.8 249,171 + +1.3 249,171 + +1.0 249,171 + -0.6 249,210 - +1.0 249,268 - +3.4 249,269 + +2.4 249,270 - +2.3 249,276 + +3.6 249,281 + -2.4 249,281 + +3.2 249,314 - +0.6 249,314 - +0.4 249,315 + +3.1 249,315 + +2.4 249,315 + -1.1 249,315 + +0.6 249,315 + -1.5 249,319 - +1.2 249,328 - +1.5 249,344 - -0.1 249,344 - -1.0 249,352 + MMJJ_RS01300 0.11 +3.8 249,352 + MMJJ_RS01300 0.11 -3.7 249,371 - MMJJ_RS01300 0.14 +1.5 249,455 - MMJJ_RS01300 0.30 +0.8 249,455 - MMJJ_RS01300 0.30 +1.0 249,499 - MMJJ_RS01300 0.38 -0.4 249,500 + MMJJ_RS01300 0.38 +3.3 249,502 - MMJJ_RS01300 0.39 +2.0 249,502 - MMJJ_RS01300 0.39 +0.5 249,502 - MMJJ_RS01300 0.39 -2.3 249,503 + MMJJ_RS01300 0.39 -0.4 249,503 + MMJJ_RS01300 0.39 +2.2 249,503 + MMJJ_RS01300 0.39 +1.7 249,503 + MMJJ_RS01300 0.39 -2.3 249,530 - MMJJ_RS01300 0.44 -2.3 249,554 - MMJJ_RS01300 0.48 -0.4 249,555 + MMJJ_RS01300 0.48 -0.8 249,555 + MMJJ_RS01300 0.48 -3.1 249,595 + MMJJ_RS01300 0.56 +1.2 249,622 + MMJJ_RS01300 0.61 +1.7 249,626 - MMJJ_RS01300 0.62 -3.5 249,627 + MMJJ_RS01300 0.62 -2.5 249,643 - MMJJ_RS01300 0.65 -1.6 249,643 - MMJJ_RS01300 0.65 +1.7 249,716 - MMJJ_RS01300 0.78 +1.8 249,727 - MMJJ_RS01300 0.80 -3.7 249,728 + MMJJ_RS01300 0.81 +0.6 249,728 + MMJJ_RS01300 0.81 -1.6 249,732 + MMJJ_RS01300 0.81 +1.9 249,772 + MMJJ_RS01300 0.89 +0.9 249,775 + MMJJ_RS01300 0.89 +0.2 249,856 - -2.0 249,857 + +0.9 249,857 + +1.5 249,857 + +2.4 249,857 + -0.6 249,857 + +3.8 249,858 - -1.8 249,859 + -1.1 249,871 - -0.5 249,896 + MMJJ_RS01305 0.12 -2.0 249,898 - MMJJ_RS01305 0.13 +1.3 249,898 - MMJJ_RS01305 0.13 +0.2 249,898 - MMJJ_RS01305 0.13 -1.4 249,899 + MMJJ_RS01305 0.13 +1.2 249,970 - MMJJ_RS01305 0.30 -2.8 249,970 - MMJJ_RS01305 0.30 -2.1 249,970 - MMJJ_RS01305 0.30 +1.1 249,970 - MMJJ_RS01305 0.30 +1.3 249,970 - MMJJ_RS01305 0.30 +0.8 249,970 - MMJJ_RS01305 0.30 -1.0 249,970 - MMJJ_RS01305 0.30 -0.6 249,971 + MMJJ_RS01305 0.30 -2.6 249,971 + MMJJ_RS01305 0.30 -2.5 249,971 + MMJJ_RS01305 0.30 -1.6 249,974 - MMJJ_RS01305 0.31 +3.4 249,974 - MMJJ_RS01305 0.31 -2.9 249,974 - MMJJ_RS01305 0.31 -1.4 249,975 + MMJJ_RS01305 0.31 +1.7 249,975 + MMJJ_RS01305 0.31 +3.7 249,975 + MMJJ_RS01305 0.31 +0.1 249,975 + MMJJ_RS01305 0.31 -3.6 250,003 - MMJJ_RS01305 0.37 +1.4 250,005 - MMJJ_RS01305 0.38 +1.6 250,006 + MMJJ_RS01305 0.38 +0.7 250,006 + MMJJ_RS01305 0.38 -1.4 250,008 - MMJJ_RS01305 0.38 -1.1 250,009 + MMJJ_RS01305 0.39 -2.5 250,009 + MMJJ_RS01305 0.39 -3.7 250,009 + MMJJ_RS01305 0.39 -0.7 250,009 + MMJJ_RS01305 0.39 +1.6 250,045 + MMJJ_RS01305 0.47 +3.0 250,048 - MMJJ_RS01305 0.48 +1.3 250,048 - MMJJ_RS01305 0.48 -0.6 250,048 - MMJJ_RS01305 0.48 -2.5 250,048 - MMJJ_RS01305 0.48 -1.4 250,048 - MMJJ_RS01305 0.48 -0.4 250,048 - MMJJ_RS01305 0.48 -2.5 250,049 + MMJJ_RS01305 0.48 -1.5 250,049 + MMJJ_RS01305 0.48 -1.8 250,049 + MMJJ_RS01305 0.48 -1.6 250,049 + MMJJ_RS01305 0.48 -3.9 250,049 + MMJJ_RS01305 0.48 -3.7 250,050 - MMJJ_RS01305 0.48 +0.7 250,050 - MMJJ_RS01305 0.48 -2.1 250,050 - MMJJ_RS01305 0.48 -3.2 250,050 - MMJJ_RS01305 0.48 +0.7 250,050 - MMJJ_RS01305 0.48 +2.9 250,050 - MMJJ_RS01305 0.48 +0.4 250,050 - MMJJ_RS01305 0.48 -1.7 250,050 - MMJJ_RS01305 0.48 +1.8 250,050 - MMJJ_RS01305 0.48 -3.4 250,051 + MMJJ_RS01305 0.49 -1.0 250,051 + MMJJ_RS01305 0.49 -0.6 250,051 + MMJJ_RS01305 0.49 -2.5 250,051 + MMJJ_RS01305 0.49 +3.5 250,054 - MMJJ_RS01305 0.49 -2.6 250,055 + MMJJ_RS01305 0.50 -0.8 250,084 + MMJJ_RS01305 0.56 +3.5 250,094 + MMJJ_RS01305 0.59 -1.9 250,210 - MMJJ_RS01305 0.86 +0.9 250,246 - -1.7 250,284 - -0.8 250,286 - +1.9 250,370 - +1.7 250,371 + +4.2 250,393 - -1.7 250,412 - +0.9 250,412 - -1.8 250,412 - -2.9 250,413 + MMJJ_RS01310 0.10 -0.5 250,499 + MMJJ_RS01310 0.17 +1.6 250,508 - MMJJ_RS01310 0.17 -0.7 250,512 + MMJJ_RS01310 0.18 +0.4 250,572 + MMJJ_RS01310 0.22 +0.4 250,587 + MMJJ_RS01310 0.23 +1.2 250,588 - MMJJ_RS01310 0.23 +0.6 250,588 - MMJJ_RS01310 0.23 -1.0 250,588 - MMJJ_RS01310 0.23 -2.0 250,593 + MMJJ_RS01310 0.24 +1.9 250,668 + MMJJ_RS01310 0.30 +1.6 250,697 - MMJJ_RS01310 0.32 -1.6 250,729 - MMJJ_RS01310 0.34 +0.8 250,729 - MMJJ_RS01310 0.34 +0.8 250,733 - MMJJ_RS01310 0.35 +3.4 250,734 + MMJJ_RS01310 0.35 +0.0 250,775 + MMJJ_RS01310 0.38 -1.2 250,787 + MMJJ_RS01310 0.39 +0.2
Or see this region's nucleotide sequence