Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00665

Experiment: McCas_formate_complete sodium nitrite 0.416666666666667 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sodium nitrite 0.416666666666667 mM
128,001	-				-0.8
128,008	+				-1.4
128,011	+				+0.1
128,012	-				+1.0
128,012	-				-1.1
128,012	-				-2.3
128,012	-				+0.6
128,013	+				+0.6
128,018	+				-2.7
128,032	-				-1.3
128,032	-				+3.5
128,037	+				-3.4
128,069	+				+1.1
128,070	-				+1.8
128,070	-				+1.2
128,070	-				-0.0
128,070	-				+2.6
128,070	-				-2.6
128,071	+				+3.2
128,071	+				+2.8
128,071	+				+0.3
128,071	+				-3.7
128,120	+				-0.7
128,135	-				+5.8
128,136	+				-1.8
128,184	-				+3.2
128,191	+				+3.3
128,213	-				-1.5
128,217	-		MMJJ_RS00660	0.10	+1.8
128,217	-		MMJJ_RS00660	0.10	-0.8
128,218	+		MMJJ_RS00660	0.10	-1.4
128,253	+		MMJJ_RS00660	0.14	+3.2
128,259	-		MMJJ_RS00660	0.15	-0.8
128,277	+		MMJJ_RS00660	0.17	-1.4
128,317	-		MMJJ_RS00660	0.22	+0.9
128,317	-		MMJJ_RS00660	0.22	-0.8
128,319	-		MMJJ_RS00660	0.22	+0.6
128,319	-		MMJJ_RS00660	0.22	-2.5
128,319	-		MMJJ_RS00660	0.22	+2.0
128,320	+		MMJJ_RS00660	0.23	+2.2
128,321	-		MMJJ_RS00660	0.23	+1.0
128,321	-		MMJJ_RS00660	0.23	-0.4
128,322	+		MMJJ_RS00660	0.23	+0.0
128,322	+		MMJJ_RS00660	0.23	+1.2
128,322	+		MMJJ_RS00660	0.23	+2.9
128,322	+		MMJJ_RS00660	0.23	-0.7
128,322	+		MMJJ_RS00660	0.23	+0.1
128,323	-		MMJJ_RS00660	0.23	+1.2
128,324	+		MMJJ_RS00660	0.23	-1.7
128,324	+		MMJJ_RS00660	0.23	+3.1
128,324	+		MMJJ_RS00660	0.23	+1.4
128,326	-		MMJJ_RS00660	0.23	+1.3
128,327	+		MMJJ_RS00660	0.23	-2.7
128,331	+		MMJJ_RS00660	0.24	-0.1
128,394	-		MMJJ_RS00660	0.32	+4.3
128,395	+		MMJJ_RS00660	0.32	-2.1
128,395	+		MMJJ_RS00660	0.32	-3.8
128,400	-		MMJJ_RS00660	0.32	-2.0
128,442	-		MMJJ_RS00660	0.37	+4.3
128,452	-		MMJJ_RS00660	0.39	+2.4
128,454	-		MMJJ_RS00660	0.39	+0.5
128,459	-		MMJJ_RS00660	0.39	-1.4
128,486	+		MMJJ_RS00660	0.43	-2.8
128,488	-		MMJJ_RS00660	0.43	+3.1
128,489	+		MMJJ_RS00660	0.43	-0.7
128,490	-		MMJJ_RS00660	0.43	-1.9
128,492	-		MMJJ_RS00660	0.43	+2.9
128,493	+		MMJJ_RS00660	0.44	-1.4
128,527	+		MMJJ_RS00660	0.48	+1.4
128,621	+		MMJJ_RS00660	0.59	-3.7
128,621	+		MMJJ_RS00660	0.59	+0.9
128,639	-				+1.2
128,710	+		MMJJ_RS00660	0.70	+1.6
128,714	-		MMJJ_RS00660	0.70	+0.6
128,714	-		MMJJ_RS00660	0.70	-0.8
128,715	+		MMJJ_RS00660	0.70	+3.0
128,715	+		MMJJ_RS00660	0.70	-0.7
128,735	-		MMJJ_RS00660	0.73	+2.0
128,760	-		MMJJ_RS00660	0.76	-2.4
128,761	+		MMJJ_RS00660	0.76	-2.5
128,761	+		MMJJ_RS00660	0.76	+3.1
128,839	-		MMJJ_RS00660	0.85	-0.2
128,839	-		MMJJ_RS00660	0.85	+3.3
128,856	-		MMJJ_RS00660	0.88	+2.0
128,894	-				+2.2
128,939	+				+0.6
128,960	-				+3.1
129,019	-				+1.8
129,019	-				+1.3
129,019	-				+4.8
129,073	+				+4.3
129,091	+		MMJJ_RS00665	0.10	+2.8
129,134	-		MMJJ_RS00665	0.13	-4.1
129,134	-		MMJJ_RS00665	0.13	+2.0
129,135	+		MMJJ_RS00665	0.14	-0.0
129,135	+		MMJJ_RS00665	0.14	+3.4
129,145	+		MMJJ_RS00665	0.14	+1.0
129,198	+		MMJJ_RS00665	0.18	+2.6
129,241	-		MMJJ_RS00665	0.22	-0.4
129,241	-		MMJJ_RS00665	0.22	-0.4
129,248	-		MMJJ_RS00665	0.22	-0.8
129,249	+		MMJJ_RS00665	0.22	+1.5
129,273	-		MMJJ_RS00665	0.24	-1.3
129,273	-		MMJJ_RS00665	0.24	-0.3
129,273	-		MMJJ_RS00665	0.24	-0.9
129,324	-		MMJJ_RS00665	0.28	+2.1
129,347	+		MMJJ_RS00665	0.30	-1.9
129,365	-		MMJJ_RS00665	0.31	+1.4
129,365	-		MMJJ_RS00665	0.31	-0.9
129,365	-		MMJJ_RS00665	0.31	-1.1
129,366	+		MMJJ_RS00665	0.31	-3.3
129,366	+		MMJJ_RS00665	0.31	-0.3
129,366	+		MMJJ_RS00665	0.31	-2.1
129,369	+		MMJJ_RS00665	0.31	+1.2
129,376	-		MMJJ_RS00665	0.32	+1.3
129,377	+		MMJJ_RS00665	0.32	+1.9
129,419	-		MMJJ_RS00665	0.35	+2.9
129,419	-		MMJJ_RS00665	0.35	+2.9
129,420	+		MMJJ_RS00665	0.35	+5.4
129,420	+		MMJJ_RS00665	0.35	-1.6
129,448	-		MMJJ_RS00665	0.38	+4.1
129,504	-		MMJJ_RS00665	0.42	-0.2
129,537	+		MMJJ_RS00665	0.44	+1.7
129,543	-		MMJJ_RS00665	0.45	+3.1
129,544	+		MMJJ_RS00665	0.45	-0.8
129,547	-		MMJJ_RS00665	0.45	+4.3
129,583	-		MMJJ_RS00665	0.48	+3.1
129,637	-		MMJJ_RS00665	0.52	+0.4
129,656	+		MMJJ_RS00665	0.54	+2.4
129,656	+		MMJJ_RS00665	0.54	-1.8
129,656	+		MMJJ_RS00665	0.54	+2.1
129,664	-		MMJJ_RS00665	0.54	-0.8
129,739	-		MMJJ_RS00665	0.60	-2.7
129,740	+		MMJJ_RS00665	0.60	-1.6
129,846	+		MMJJ_RS00665	0.68	+2.8
129,846	+		MMJJ_RS00665	0.68	-0.9
129,865	-		MMJJ_RS00665	0.70	+1.6
129,865	-		MMJJ_RS00665	0.70	-1.8
129,866	+		MMJJ_RS00665	0.70	-1.1
129,867	-		MMJJ_RS00665	0.70	-1.5
129,870	+		MMJJ_RS00665	0.70	+0.2
129,965	+		MMJJ_RS00665	0.77	+4.2
129,996	-		MMJJ_RS00665	0.80	+2.3
130,026	-		MMJJ_RS00665	0.82	-3.7
130,034	+		MMJJ_RS00665	0.83	-1.3
130,043	-		MMJJ_RS00665	0.83	-3.0
130,043	-		MMJJ_RS00665	0.83	-1.1
130,043	-		MMJJ_RS00665	0.83	+1.3
130,043	-		MMJJ_RS00665	0.83	-0.2
130,044	+		MMJJ_RS00665	0.83	+0.8
130,044	+		MMJJ_RS00665	0.83	+0.3
130,044	+		MMJJ_RS00665	0.83	-1.8
130,053	-		MMJJ_RS00665	0.84	-3.0
130,053	-		MMJJ_RS00665	0.84	+3.1
130,069	-		MMJJ_RS00665	0.85	+1.7
130,069	-		MMJJ_RS00665	0.85	+2.2
130,069	-		MMJJ_RS00665	0.85	+2.8
130,070	+		MMJJ_RS00665	0.85	-0.8
130,070	+		MMJJ_RS00665	0.85	+3.2
130,070	+		MMJJ_RS00665	0.85	+0.2
130,070	+		MMJJ_RS00665	0.85	-0.6
130,076	+		MMJJ_RS00665	0.86	-1.8
130,140	-				+1.6
130,140	-				-0.9
130,140	-				-1.4
130,141	+				+1.2
130,141	+				+2.3
130,153	+				+2.8
130,178	-				-1.1
130,179	+				-2.2
130,226	-				-0.0
130,227	+				-0.1
130,232	+				+2.6
130,232	+				+2.3
130,234	-				+3.0
130,236	-				+4.0
130,237	+				+1.6
130,249	-				-0.1
130,271	-				-2.4
130,271	-				+1.2
130,272	+				+3.0
130,272	+				-1.4
130,317	-				+1.0
130,317	-				+3.9
130,317	-				+5.0
130,317	-				-2.3
130,317	-				+2.5
130,318	+				+0.2
130,319	-				-0.6
130,319	-				+5.0
130,319	-				-2.1
130,320	+				+0.7
130,320	+				+7.0
130,320	+				+1.6
130,343	-				+3.9
130,344	+				+2.3
130,394	-				-0.1
130,394	-				+2.2
130,394	-				-2.0
130,394	-				-0.3
130,395	+				-1.1
130,440	-				-0.4
130,440	-				+2.4
130,440	-				+2.2
130,440	-				-2.8
130,441	+				+1.2
130,441	+				+0.5
130,441	+				+1.1
130,444	+				-1.4
130,445	-				-2.9
130,445	-				-0.8
130,445	-				+3.0
130,445	-				+0.3
130,450	-				+1.6
130,450	-				+1.2
130,450	-				-1.3
130,451	+				+3.8
130,451	+				+0.7
130,451	+				+1.1
130,488	+				+1.9
130,488	+				-3.0
130,489	-				-3.4
130,489	-				+2.2
130,489	-				+2.1
130,489	-				-0.4
130,490	+				+2.8
130,498	-				+0.8
130,521	-				-2.2
130,521	-				-0.5
130,522	+				-0.8
130,522	+				+0.2
130,522	+				+1.1
130,525	-				+4.1
130,525	-				-1.1
130,530	-				+0.6
130,531	+				+1.7
130,534	-				-0.8
130,553	+				+0.3
130,563	+				-0.7
130,572	+				+1.1
130,572	+				+1.1
130,597	-				-1.6
130,640	-				+1.6
130,640	-				-2.1
130,640	-				+1.9
130,641	+				+1.2
130,656	+				+1.0
130,701	-				+1.9
130,729	-				-1.1
130,735	-				-0.7
130,891	-		MMJJ_RS00670	0.17	+2.7
130,985	-		MMJJ_RS00670	0.46	-2.7
130,985	-		MMJJ_RS00670	0.46	+3.8
130,986	+		MMJJ_RS00670	0.46	+1.6
130,986	+		MMJJ_RS00670	0.46	+2.6
130,986	+		MMJJ_RS00670	0.46	+0.9
131,011	-		MMJJ_RS00670	0.54	-2.4
131,011	-		MMJJ_RS00670	0.54	-1.8
131,011	-		MMJJ_RS00670	0.54	-0.0
131,011	-		MMJJ_RS00670	0.54	-1.2
131,012	+		MMJJ_RS00670	0.55	-0.4
131,012	+		MMJJ_RS00670	0.55	+1.8
131,012	+		MMJJ_RS00670	0.55	+1.0
131,012	+		MMJJ_RS00670	0.55	+2.2
131,012	+		MMJJ_RS00670	0.55	+2.4
131,013	-		MMJJ_RS00670	0.55	+1.1
131,013	-		MMJJ_RS00670	0.55	-1.6
131,116	-		MMJJ_RS00670	0.87	-0.6
131,116	-		MMJJ_RS00670	0.87	+1.0
131,117	+		MMJJ_RS00670	0.87	-0.5
131,117	+		MMJJ_RS00670	0.87	-1.5
131,163	+				-1.8
131,170	-				+1.8
131,170	-				-0.0
131,180	-				-2.4
131,221	-				-3.5
131,221	-				+1.2
131,221	-				-1.1
131,221	-				+1.8
131,222	+				+1.7
131,230	-				+0.8
131,230	-				-1.6
131,230	-				-1.7
131,230	-				+1.5
131,231	+				-0.7
131,231	+				+0.1
131,231	+				-0.5
131,231	+				+2.1
131,233	-				+3.1
131,233	-				-0.4
131,233	-				+1.4
131,233	-				-1.6
131,233	-				-3.6
131,233	-				-0.1
131,234	+				-0.4
131,234	+				-1.4
131,237	-				+1.8
131,237	-				+1.8
131,237	-				+0.8
131,237	-				+1.1
131,238	+				-2.6
131,238	+				+2.2
131,246	+				-0.1
131,246	+				+0.8
131,246	+				+0.1
131,257	-				+1.1
131,258	+				-0.2
131,259	-				-2.3