Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08420

Experiment: McCas_formate_complete selenate 31.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete selenate 31.25 mM
1,548,070	+		MMJJ_RS08410	0.66	-1.2
1,548,081	-		MMJJ_RS08410	0.69	-2.0
1,548,096	-		MMJJ_RS08410	0.73	-3.2
1,548,211	-				+0.5
1,548,212	+				-3.8
1,548,243	-				+3.4
1,548,247	-				-0.8
1,548,247	-				+2.7
1,548,247	-				-0.4
1,548,247	-				+1.0
1,548,248	+				+2.0
1,548,273	-				+1.2
1,548,276	+				+1.2
1,548,305	-				-0.4
1,548,326	+				-0.1
1,548,328	+				-2.9
1,548,328	+				+2.0
1,548,340	-				-3.1
1,548,340	-				-0.8
1,548,341	+				-2.5
1,548,455	-		MMJJ_RS08415	0.14	-0.9
1,548,469	-		MMJJ_RS08415	0.16	+1.3
1,548,497	+		MMJJ_RS08415	0.20	+1.0
1,548,517	-		MMJJ_RS08415	0.23	+0.6
1,548,517	-		MMJJ_RS08415	0.23	-0.2
1,548,517	-		MMJJ_RS08415	0.23	-3.2
1,548,517	-		MMJJ_RS08415	0.23	-0.8
1,548,517	-		MMJJ_RS08415	0.23	+1.5
1,548,517	-		MMJJ_RS08415	0.23	+1.0
1,548,518	+		MMJJ_RS08415	0.23	-4.0
1,548,518	+		MMJJ_RS08415	0.23	+0.9
1,548,518	+		MMJJ_RS08415	0.23	-1.1
1,548,518	+		MMJJ_RS08415	0.23	-3.0
1,548,518	+		MMJJ_RS08415	0.23	-0.7
1,548,543	-		MMJJ_RS08415	0.27	-0.5
1,548,559	-		MMJJ_RS08415	0.30	+0.8
1,548,560	+		MMJJ_RS08415	0.30	+0.8
1,548,582	-		MMJJ_RS08415	0.33	+2.1
1,548,682	-		MMJJ_RS08415	0.49	-2.5
1,548,682	-		MMJJ_RS08415	0.49	+1.8
1,548,683	+		MMJJ_RS08415	0.49	+1.7
1,548,683	+		MMJJ_RS08415	0.49	+1.3
1,548,729	-		MMJJ_RS08415	0.56	+0.3
1,548,729	-		MMJJ_RS08415	0.56	-4.3
1,548,730	+		MMJJ_RS08415	0.56	-0.2
1,548,730	+		MMJJ_RS08415	0.56	-4.1
1,548,730	+		MMJJ_RS08415	0.56	-1.8
1,548,787	+		MMJJ_RS08415	0.65	+0.2
1,548,887	-		MMJJ_RS08415	0.81	+2.0
1,548,913	-		MMJJ_RS08415	0.85	+1.3
1,548,935	+		MMJJ_RS08415	0.88	+1.4
1,548,949	-				-5.1
1,548,951	-				+1.7
1,548,951	-				-1.2
1,548,951	-				+0.6
1,548,952	+				+1.4
1,548,953	-				-2.5
1,548,953	-				+0.3
1,548,954	+				-1.0
1,548,954	+				-0.0
1,548,956	+				-3.1
1,548,956	+				-2.4
1,548,956	+				-0.8
1,549,029	-				-1.9
1,549,031	-				-0.2
1,549,041	-				+1.3
1,549,080	+				+1.0
1,549,103	-				+1.0
1,549,104	+				+0.3
1,549,104	+				-4.7
1,549,104	+				+0.0
1,549,104	+				-0.0
1,549,107	-				+0.7
1,549,127	-		MMJJ_RS08420	0.11	+1.2
1,549,127	-		MMJJ_RS08420	0.11	-3.7
1,549,128	+		MMJJ_RS08420	0.11	-0.6
1,549,135	+		MMJJ_RS08420	0.12	+1.0
1,549,158	+		MMJJ_RS08420	0.14	-2.9
1,549,222	-		MMJJ_RS08420	0.20	+0.1
1,549,223	+		MMJJ_RS08420	0.20	+0.5
1,549,223	+		MMJJ_RS08420	0.20	-1.8
1,549,226	-		MMJJ_RS08420	0.20	+0.5
1,549,226	-		MMJJ_RS08420	0.20	+1.8
1,549,227	+		MMJJ_RS08420	0.20	+0.5
1,549,243	-		MMJJ_RS08420	0.22	-0.8
1,549,271	-		MMJJ_RS08420	0.24	-0.1
1,549,277	+		MMJJ_RS08420	0.25	-5.1
1,549,332	-		MMJJ_RS08420	0.30	-0.8
1,549,332	-		MMJJ_RS08420	0.30	+2.1
1,549,333	+		MMJJ_RS08420	0.30	+0.0
1,549,360	-		MMJJ_RS08420	0.33	-4.3
1,549,373	-		MMJJ_RS08420	0.34	+1.9
1,549,374	+		MMJJ_RS08420	0.34	+0.1
1,549,374	+		MMJJ_RS08420	0.34	-0.3
1,549,374	+		MMJJ_RS08420	0.34	+1.0
1,549,374	+		MMJJ_RS08420	0.34	+0.5
1,549,379	-		MMJJ_RS08420	0.35	+0.3
1,549,379	-		MMJJ_RS08420	0.35	+0.4
1,549,380	+		MMJJ_RS08420	0.35	+1.5
1,549,380	+		MMJJ_RS08420	0.35	-3.1
1,549,380	+		MMJJ_RS08420	0.35	-3.6
1,549,380	+		MMJJ_RS08420	0.35	-3.7
1,549,380	+		MMJJ_RS08420	0.35	+1.6
1,549,381	-		MMJJ_RS08420	0.35	+0.4
1,549,382	+		MMJJ_RS08420	0.35	+0.8
1,549,382	+		MMJJ_RS08420	0.35	+0.4
1,549,384	-		MMJJ_RS08420	0.35	+2.5
1,549,385	+		MMJJ_RS08420	0.35	+0.5
1,549,385	+		MMJJ_RS08420	0.35	+0.5
1,549,385	+		MMJJ_RS08420	0.35	+0.8
1,549,385	+		MMJJ_RS08420	0.35	-0.8
1,549,415	-		MMJJ_RS08420	0.38	-4.5
1,549,427	-		MMJJ_RS08420	0.39	+0.0
1,549,427	-		MMJJ_RS08420	0.39	-3.9
1,549,496	-		MMJJ_RS08420	0.46	-0.8
1,549,503	-		MMJJ_RS08420	0.46	-3.8
1,549,503	-		MMJJ_RS08420	0.46	+0.4
1,549,503	-		MMJJ_RS08420	0.46	+1.4
1,549,504	+		MMJJ_RS08420	0.46	-2.5
1,549,504	+		MMJJ_RS08420	0.46	+0.7
1,549,507	-		MMJJ_RS08420	0.47	-0.1
1,549,507	-		MMJJ_RS08420	0.47	+1.0
1,549,507	-		MMJJ_RS08420	0.47	+1.2
1,549,508	+		MMJJ_RS08420	0.47	-4.2
1,549,508	+		MMJJ_RS08420	0.47	+1.6
1,549,508	+		MMJJ_RS08420	0.47	-3.9
1,549,508	+		MMJJ_RS08420	0.47	-0.4
1,549,508	+		MMJJ_RS08420	0.47	+1.5
1,549,513	+		MMJJ_RS08420	0.47	-0.1
1,549,524	+		MMJJ_RS08420	0.48	-1.8
1,549,524	+		MMJJ_RS08420	0.48	-2.0
1,549,606	+		MMJJ_RS08420	0.56	+1.6
1,549,634	-		MMJJ_RS08420	0.59	+0.6
1,549,634	-		MMJJ_RS08420	0.59	+1.3
1,549,635	+		MMJJ_RS08420	0.59	-4.3
1,549,638	+		MMJJ_RS08420	0.59	+0.5
1,549,638	+		MMJJ_RS08420	0.59	-3.8
1,549,638	+		MMJJ_RS08420	0.59	-3.7
1,549,638	+		MMJJ_RS08420	0.59	+0.1
1,549,673	+		MMJJ_RS08420	0.62	-1.2
1,549,676	-		MMJJ_RS08420	0.63	-3.8
1,549,676	-		MMJJ_RS08420	0.63	+2.4
1,549,676	-		MMJJ_RS08420	0.63	-0.9
1,549,713	-		MMJJ_RS08420	0.66	+1.0
1,549,713	-		MMJJ_RS08420	0.66	+2.6
1,549,713	-		MMJJ_RS08420	0.66	+2.1
1,549,714	+		MMJJ_RS08420	0.66	+1.2
1,549,714	+		MMJJ_RS08420	0.66	-0.5
1,549,716	-		MMJJ_RS08420	0.66	-1.3
1,549,716	-		MMJJ_RS08420	0.66	-1.0
1,549,717	+		MMJJ_RS08420	0.67	-0.1
1,549,728	-		MMJJ_RS08420	0.68	+0.5
1,549,728	-		MMJJ_RS08420	0.68	-2.5
1,549,728	-		MMJJ_RS08420	0.68	+2.3
1,549,729	+		MMJJ_RS08420	0.68	+1.3
1,549,751	-		MMJJ_RS08420	0.70	-0.5
1,549,752	+		MMJJ_RS08420	0.70	-0.7
1,549,784	-		MMJJ_RS08420	0.73	-2.0
1,549,785	+		MMJJ_RS08420	0.73	+1.8
1,549,785	+		MMJJ_RS08420	0.73	-0.5
1,549,785	+		MMJJ_RS08420	0.73	+0.9
1,549,844	-		MMJJ_RS08420	0.79	+0.1
1,549,859	-		MMJJ_RS08420	0.80	+1.6
1,549,859	-		MMJJ_RS08420	0.80	-0.9
1,549,859	-		MMJJ_RS08420	0.80	-0.7
1,549,859	-		MMJJ_RS08420	0.80	+2.4
1,549,859	-		MMJJ_RS08420	0.80	+0.9
1,549,860	+		MMJJ_RS08420	0.80	+1.7
1,549,860	+		MMJJ_RS08420	0.80	-3.3
1,549,860	+		MMJJ_RS08420	0.80	+2.0
1,549,892	-		MMJJ_RS08420	0.83	-3.2
1,549,915	+		MMJJ_RS08420	0.85	+1.2
1,550,004	-				-1.5
1,550,033	+				+1.9
1,550,033	+				-4.5
1,550,036	+				+1.2
1,550,072	+				+2.1
1,550,105	-				-0.7
1,550,131	-				-0.7
1,550,132	+				-0.8
1,550,146	+				+1.3