Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02185

Experiment: McCas_formate_complete selenate 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02180 and MMJJ_RS02185 are separated by 61 nucleotidesMMJJ_RS02185 and MMJJ_RS02190 are separated by 216 nucleotides MMJJ_RS02180: MMJJ_RS02180 - DHH family phosphoesterase, at 413,244 to 414,539 _RS02180 MMJJ_RS02185: MMJJ_RS02185 - TIGR00296 family protein, at 414,601 to 415,212 _RS02185 MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279 _RS02190 Position (kb) 414 415 416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 413.711 kb on + strand, within MMJJ_RS02180at 413.737 kb on + strand, within MMJJ_RS02180at 413.820 kb on - strand, within MMJJ_RS02180at 413.917 kb on - strand, within MMJJ_RS02180at 413.920 kb on + strand, within MMJJ_RS02180at 413.961 kb on + strand, within MMJJ_RS02180at 414.004 kb on + strand, within MMJJ_RS02180at 414.008 kb on - strand, within MMJJ_RS02180at 414.251 kb on - strand, within MMJJ_RS02180at 414.256 kb on + strand, within MMJJ_RS02180at 414.263 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.291 kb on - strand, within MMJJ_RS02180at 414.293 kb on - strand, within MMJJ_RS02180at 414.385 kb on + strand, within MMJJ_RS02180at 414.402 kb on - strand, within MMJJ_RS02180at 414.450 kb on - strandat 414.453 kb on - strandat 414.531 kb on - strandat 414.531 kb on - strandat 414.532 kb on + strandat 414.532 kb on + strandat 414.534 kb on + strandat 414.563 kb on + strandat 414.563 kb on + strandat 414.569 kb on + strandat 414.569 kb on + strandat 414.573 kb on - strandat 414.574 kb on + strandat 414.612 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.614 kb on - strandat 414.695 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strandat 414.768 kb on - strand, within MMJJ_RS02185at 414.768 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.770 kb on - strand, within MMJJ_RS02185at 414.778 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.917 kb on + strand, within MMJJ_RS02185at 414.924 kb on - strand, within MMJJ_RS02185at 414.925 kb on + strand, within MMJJ_RS02185at 414.960 kb on - strand, within MMJJ_RS02185at 414.982 kb on - strand, within MMJJ_RS02185at 414.997 kb on - strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 414.998 kb on + strand, within MMJJ_RS02185at 415.038 kb on - strand, within MMJJ_RS02185at 415.068 kb on - strand, within MMJJ_RS02185at 415.084 kb on - strand, within MMJJ_RS02185at 415.116 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.145 kb on + strand, within MMJJ_RS02185at 415.149 kb on + strand, within MMJJ_RS02185at 415.172 kb on - strandat 415.204 kb on - strandat 415.228 kb on + strandat 415.228 kb on + strandat 415.229 kb on - strandat 415.230 kb on + strandat 415.235 kb on + strandat 415.246 kb on - strandat 415.255 kb on - strandat 415.261 kb on + strandat 415.314 kb on - strandat 415.315 kb on + strandat 415.315 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.347 kb on + strandat 415.361 kb on - strandat 415.375 kb on + strandat 415.378 kb on - strandat 415.378 kb on - strandat 415.379 kb on + strandat 415.439 kb on - strandat 415.513 kb on - strandat 415.513 kb on - strandat 415.559 kb on - strandat 415.572 kb on - strandat 415.609 kb on + strandat 415.612 kb on - strandat 415.845 kb on - strand, within MMJJ_RS02190at 415.846 kb on + strand, within MMJJ_RS02190at 415.863 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.865 kb on - strand, within MMJJ_RS02190at 415.892 kb on + strand, within MMJJ_RS02190at 415.905 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.915 kb on - strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.916 kb on + strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.917 kb on - strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.918 kb on + strand, within MMJJ_RS02190at 415.921 kb on + strand, within MMJJ_RS02190at 415.939 kb on - strand, within MMJJ_RS02190at 416.012 kb on + strand, within MMJJ_RS02190at 416.044 kb on - strand, within MMJJ_RS02190at 416.079 kb on - strand, within MMJJ_RS02190at 416.082 kb on - strand, within MMJJ_RS02190at 416.158 kb on - strand, within MMJJ_RS02190at 416.159 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.161 kb on + strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.177 kb on - strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.178 kb on + strand, within MMJJ_RS02190at 416.182 kb on + strand, within MMJJ_RS02190

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete selenate 31.25 mM
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413,711 + MMJJ_RS02180 0.36 +1.8
413,737 + MMJJ_RS02180 0.38 -4.2
413,820 - MMJJ_RS02180 0.44 +0.5
413,917 - MMJJ_RS02180 0.52 -3.9
413,920 + MMJJ_RS02180 0.52 -4.7
413,961 + MMJJ_RS02180 0.55 -2.1
414,004 + MMJJ_RS02180 0.59 -0.3
414,008 - MMJJ_RS02180 0.59 +0.3
414,251 - MMJJ_RS02180 0.78 +2.0
414,256 + MMJJ_RS02180 0.78 +0.6
414,263 - MMJJ_RS02180 0.79 +1.1
414,291 - MMJJ_RS02180 0.81 +1.6
414,291 - MMJJ_RS02180 0.81 +0.4
414,291 - MMJJ_RS02180 0.81 +0.9
414,291 - MMJJ_RS02180 0.81 -3.7
414,293 - MMJJ_RS02180 0.81 +0.4
414,385 + MMJJ_RS02180 0.88 +1.2
414,402 - MMJJ_RS02180 0.89 -1.2
414,450 - +1.5
414,453 - +2.5
414,531 - +1.0
414,531 - +3.5
414,532 + +1.2
414,532 + +1.2
414,534 + +1.5
414,563 + +0.2
414,563 + -0.0
414,569 + -0.9
414,569 + -3.9
414,573 - +0.2
414,574 + +0.7
414,612 - -0.9
414,614 - +2.0
414,614 - -0.3
414,614 - -0.4
414,695 - MMJJ_RS02185 0.15 +1.7
414,768 - -1.3
414,768 - MMJJ_RS02185 0.27 +0.8
414,768 - MMJJ_RS02185 0.27 +1.3
414,770 - MMJJ_RS02185 0.28 +0.4
414,770 - MMJJ_RS02185 0.28 +0.6
414,778 + MMJJ_RS02185 0.29 +0.6
414,917 + MMJJ_RS02185 0.52 +1.2
414,917 + MMJJ_RS02185 0.52 +1.0
414,924 - MMJJ_RS02185 0.53 +0.4
414,925 + MMJJ_RS02185 0.53 +1.8
414,960 - MMJJ_RS02185 0.59 +0.8
414,982 - MMJJ_RS02185 0.62 -0.9
414,997 - MMJJ_RS02185 0.65 -3.5
414,998 + MMJJ_RS02185 0.65 +1.3
414,998 + MMJJ_RS02185 0.65 +1.5
415,038 - MMJJ_RS02185 0.71 +1.8
415,068 - MMJJ_RS02185 0.76 -1.6
415,084 - MMJJ_RS02185 0.79 +1.5
415,116 + MMJJ_RS02185 0.84 +1.7
415,145 + MMJJ_RS02185 0.89 +0.1
415,145 + MMJJ_RS02185 0.89 +0.5
415,149 + MMJJ_RS02185 0.90 -0.3
415,172 - +0.5
415,204 - +0.6
415,228 + +0.5
415,228 + +0.0
415,229 - -2.4
415,230 + -1.9
415,235 + +0.3
415,246 - -3.6
415,255 - -0.2
415,261 + -2.6
415,314 - +0.5
415,315 + +3.3
415,315 + -4.7
415,347 + +2.4
415,347 + +0.8
415,347 + -1.0
415,347 + -0.3
415,361 - -1.9
415,375 + +1.1
415,378 - +0.7
415,378 - +1.2
415,379 + +0.0
415,439 - -3.9
415,513 - -2.1
415,513 - -0.8
415,559 - -2.4
415,572 - -3.3
415,609 + -0.3
415,612 - -0.9
415,845 - MMJJ_RS02190 0.22 -0.3
415,846 + MMJJ_RS02190 0.23 -3.6
415,863 - MMJJ_RS02190 0.23 -4.2
415,865 - MMJJ_RS02190 0.24 -2.9
415,865 - MMJJ_RS02190 0.24 -3.2
415,892 + MMJJ_RS02190 0.25 -3.2
415,905 - MMJJ_RS02190 0.26 -2.1
415,915 - MMJJ_RS02190 0.26 +2.3
415,915 - MMJJ_RS02190 0.26 -3.5
415,916 + MMJJ_RS02190 0.26 -3.7
415,916 + MMJJ_RS02190 0.26 -3.3
415,916 + MMJJ_RS02190 0.26 -2.4
415,917 - MMJJ_RS02190 0.26 -1.9
415,917 - MMJJ_RS02190 0.26 +1.3
415,918 + MMJJ_RS02190 0.26 -4.3
415,918 + MMJJ_RS02190 0.26 -1.6
415,921 + MMJJ_RS02190 0.27 -0.5
415,939 - MMJJ_RS02190 0.28 -3.7
416,012 + MMJJ_RS02190 0.31 -3.5
416,044 - MMJJ_RS02190 0.33 -3.2
416,079 - MMJJ_RS02190 0.35 -2.9
416,082 - MMJJ_RS02190 0.35 +1.0
416,158 - MMJJ_RS02190 0.39 -2.3
416,159 + MMJJ_RS02190 0.39 -2.4
416,161 + MMJJ_RS02190 0.40 -3.5
416,161 + MMJJ_RS02190 0.40 -3.0
416,161 + MMJJ_RS02190 0.40 -0.3
416,177 - MMJJ_RS02190 0.40 -3.7
416,177 - MMJJ_RS02190 0.40 -3.0
416,177 - MMJJ_RS02190 0.40 -3.4
416,178 + MMJJ_RS02190 0.40 -2.6
416,178 + MMJJ_RS02190 0.40 +0.2
416,182 + MMJJ_RS02190 0.41 -4.3

Or see this region's nucleotide sequence