Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03605 and MMJJ_RS03610 are separated by 436 nucleotides MMJJ_RS03610 and MMJJ_RS03615 are separated by 1 nucleotides MMJJ_RS03615 and MMJJ_RS03620 are separated by 14 nucleotides MMJJ_RS03620 and MMJJ_RS03625 are separated by 13 nucleotides
MMJJ_RS03605: MMJJ_RS03605 - TIGR00297 family protein, at 672,173 to 672,886
_RS03605
MMJJ_RS03610: MMJJ_RS03610 - HIT family protein, at 673,323 to 673,715
_RS03610
MMJJ_RS03615: MMJJ_RS03615 - cobalt-precorrin-8 methylmutase, at 673,717 to 674,349
_RS03615
MMJJ_RS03620: MMJJ_RS03620 - DUF2097 domain-containing protein, at 674,364 to 674,654
_RS03620
MMJJ_RS03625: MMJJ_RS03625 - DUF63 family protein, at 674,668 to 675,474
_RS03625
Position (kb) 673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 672.342 kb on + strand, within MMJJ_RS03605 at 672.369 kb on + strand, within MMJJ_RS03605 at 672.544 kb on + strand, within MMJJ_RS03605 at 672.548 kb on - strand, within MMJJ_RS03605 at 672.548 kb on - strand, within MMJJ_RS03605 at 672.692 kb on + strand, within MMJJ_RS03605 at 672.743 kb on - strand, within MMJJ_RS03605 at 672.766 kb on - strand, within MMJJ_RS03605 at 672.766 kb on - strand, within MMJJ_RS03605 at 672.827 kb on - strand at 672.866 kb on - strand at 672.899 kb on + strand at 672.921 kb on + strand at 672.921 kb on + strand at 672.923 kb on - strand at 672.930 kb on - strand at 672.935 kb on - strand at 672.939 kb on - strand at 672.939 kb on - strand at 672.945 kb on + strand at 672.959 kb on - strand at 672.962 kb on - strand at 672.962 kb on - strand at 672.962 kb on - strand at 672.963 kb on + strand at 672.964 kb on - strand at 672.964 kb on - strand at 672.965 kb on + strand at 672.965 kb on + strand at 672.967 kb on - strand at 672.967 kb on - strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.969 kb on - strand at 672.970 kb on + strand at 672.988 kb on - strand at 673.024 kb on - strand at 673.028 kb on - strand at 673.040 kb on + strand at 673.045 kb on - strand at 673.045 kb on - strand at 673.090 kb on + strand at 673.101 kb on - strand at 673.113 kb on - strand at 673.145 kb on + strand at 673.145 kb on + strand at 673.162 kb on - strand at 673.197 kb on - strand at 673.229 kb on - strand at 673.230 kb on + strand at 673.249 kb on + strand at 673.249 kb on + strand at 673.254 kb on - strand at 673.255 kb on + strand at 673.272 kb on - strand at 673.272 kb on - strand at 673.279 kb on - strand at 673.308 kb on - strand at 673.308 kb on - strand at 673.309 kb on + strand at 673.309 kb on + strand at 673.309 kb on + strand at 673.318 kb on - strand at 673.328 kb on - strand at 673.329 kb on + strand at 673.356 kb on + strand at 673.369 kb on - strand, within MMJJ_RS03610 at 673.370 kb on + strand, within MMJJ_RS03610 at 673.375 kb on + strand, within MMJJ_RS03610 at 673.400 kb on - strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.438 kb on - strand, within MMJJ_RS03610 at 673.439 kb on + strand, within MMJJ_RS03610 at 673.564 kb on - strand, within MMJJ_RS03610 at 673.568 kb on - strand, within MMJJ_RS03610 at 673.569 kb on + strand, within MMJJ_RS03610 at 673.714 kb on + strand at 673.918 kb on - strand, within MMJJ_RS03615 at 673.919 kb on + strand, within MMJJ_RS03615 at 673.919 kb on + strand, within MMJJ_RS03615 at 673.953 kb on - strand, within MMJJ_RS03615 at 673.957 kb on - strand, within MMJJ_RS03615 at 674.065 kb on - strand, within MMJJ_RS03615 at 674.130 kb on - strand, within MMJJ_RS03615 at 674.293 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.356 kb on + strand at 674.356 kb on + strand at 674.358 kb on - strand at 674.358 kb on - strand at 674.359 kb on + strand at 674.365 kb on - strand at 674.380 kb on + strand at 674.421 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.557 kb on + strand, within MMJJ_RS03620 at 674.560 kb on - strand, within MMJJ_RS03620 at 674.560 kb on - strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.574 kb on - strand, within MMJJ_RS03620 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.591 kb on + strand, within MMJJ_RS03620 at 674.638 kb on - strand at 674.639 kb on + strand at 674.655 kb on + strand at 674.669 kb on - strand at 674.688 kb on - strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 672,342 + MMJJ_RS03605 0.24 -1.6 672,369 + MMJJ_RS03605 0.27 -0.9 672,544 + MMJJ_RS03605 0.52 +3.2 672,548 - MMJJ_RS03605 0.53 +1.4 672,548 - MMJJ_RS03605 0.53 -0.3 672,692 + MMJJ_RS03605 0.73 -0.0 672,743 - MMJJ_RS03605 0.80 +3.0 672,766 - MMJJ_RS03605 0.83 +2.0 672,766 - MMJJ_RS03605 0.83 +2.5 672,827 - +2.0 672,866 - -0.3 672,899 + -0.7 672,921 + -0.4 672,921 + +3.3 672,923 - +3.6 672,930 - +2.8 672,935 - -0.2 672,939 - -1.3 672,939 - -2.7 672,945 + +0.1 672,959 - -0.3 672,962 - +0.7 672,962 - -0.6 672,962 - -0.6 672,963 + -2.1 672,964 - -2.3 672,964 - -2.4 672,965 + +0.6 672,965 + +1.4 672,967 - +0.4 672,967 - +1.0 672,968 + +1.1 672,968 + +0.3 672,968 + +0.7 672,968 + +1.2 672,969 - +2.1 672,970 + -2.1 672,988 - -0.3 673,024 - +2.0 673,028 - -1.9 673,040 + -0.9 673,045 - +2.3 673,045 - -2.7 673,090 + +0.5 673,101 - +0.8 673,113 - +0.9 673,145 + -1.8 673,145 + +0.4 673,162 - +0.5 673,197 - -1.9 673,229 - -0.6 673,230 + -3.1 673,249 + -1.3 673,249 + -1.2 673,254 - +0.9 673,255 + +0.8 673,272 - -2.2 673,272 - +2.5 673,279 - -0.7 673,308 - -1.1 673,308 - +1.5 673,309 + -1.0 673,309 + -0.0 673,309 + +2.7 673,318 - -1.7 673,328 - +0.3 673,329 + -0.3 673,356 + -1.9 673,369 - MMJJ_RS03610 0.12 -0.3 673,370 + MMJJ_RS03610 0.12 +0.1 673,375 + MMJJ_RS03610 0.13 -1.2 673,400 - MMJJ_RS03610 0.20 +0.9 673,401 + MMJJ_RS03610 0.20 -1.9 673,401 + MMJJ_RS03610 0.20 -1.8 673,401 + MMJJ_RS03610 0.20 -2.3 673,401 + MMJJ_RS03610 0.20 -1.5 673,438 - MMJJ_RS03610 0.29 -0.9 673,439 + MMJJ_RS03610 0.30 -2.2 673,564 - MMJJ_RS03610 0.61 -1.3 673,568 - MMJJ_RS03610 0.62 -0.4 673,569 + MMJJ_RS03610 0.63 +1.0 673,714 + -2.8 673,918 - MMJJ_RS03615 0.32 +1.3 673,919 + MMJJ_RS03615 0.32 -0.0 673,919 + MMJJ_RS03615 0.32 +2.3 673,953 - MMJJ_RS03615 0.37 +1.3 673,957 - MMJJ_RS03615 0.38 -1.2 674,065 - MMJJ_RS03615 0.55 +0.7 674,130 - MMJJ_RS03615 0.65 -0.5 674,293 - -0.2 674,355 - -0.2 674,355 - +1.3 674,355 - -0.0 674,355 - +2.3 674,356 + +0.7 674,356 + +0.7 674,358 - +0.3 674,358 - -0.0 674,359 + -1.1 674,365 - -1.2 674,380 + +0.7 674,421 - MMJJ_RS03620 0.20 +0.3 674,556 - MMJJ_RS03620 0.66 +1.3 674,556 - MMJJ_RS03620 0.66 +0.7 674,556 - MMJJ_RS03620 0.66 -0.5 674,556 - MMJJ_RS03620 0.66 -0.0 674,557 + MMJJ_RS03620 0.66 -0.7 674,560 - MMJJ_RS03620 0.67 +0.3 674,560 - MMJJ_RS03620 0.67 +0.7 674,561 + MMJJ_RS03620 0.68 -0.0 674,561 + MMJJ_RS03620 0.68 +1.3 674,561 + MMJJ_RS03620 0.68 +2.3 674,574 - MMJJ_RS03620 0.72 -0.0 674,590 - MMJJ_RS03620 0.78 +0.3 674,590 - MMJJ_RS03620 0.78 -1.4 674,591 + MMJJ_RS03620 0.78 +1.3 674,638 - -0.0 674,639 + -0.0 674,655 + -1.0 674,669 - +1.6 674,688 - -3.1 674,689 + -0.2 674,689 + -1.3 674,689 + +1.3 674,692 - +1.1
Or see this region's nucleotide sequence