Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03370 and MMJJ_RS03375 are separated by 18 nucleotides MMJJ_RS03375 and MMJJ_RS03380 are separated by 65 nucleotides MMJJ_RS03380 and MMJJ_RS03385 are separated by 5 nucleotides MMJJ_RS03385 and MMJJ_RS03390 are separated by 0 nucleotides MMJJ_RS03390 and MMJJ_RS09295 are separated by 7 nucleotides MMJJ_RS09295 and MMJJ_RS03395 are separated by 24 nucleotides MMJJ_RS03395 and MMJJ_RS09300 are separated by 12 nucleotides MMJJ_RS09300 and MMJJ_RS03400 are separated by 11 nucleotides MMJJ_RS03400 and MMJJ_RS03405 overlap by 8 nucleotides
MMJJ_RS03370: MMJJ_RS03370 - hypothetical protein, at 638,604 to 638,948
_RS03370
MMJJ_RS03375: MMJJ_RS03375 - hypothetical protein, at 638,967 to 639,152
_RS03375
MMJJ_RS03380: MMJJ_RS03380 - hypothetical protein, at 639,218 to 639,454
_RS03380
MMJJ_RS03385: MMJJ_RS03385 - hypothetical protein, at 639,460 to 639,825
_RS03385
MMJJ_RS03390: MMJJ_RS03390 - hypothetical protein, at 639,826 to 640,062
_RS03390
MMJJ_RS09295: MMJJ_RS09295 - hypothetical protein, at 640,070 to 640,225
_RS09295
MMJJ_RS03395: MMJJ_RS03395 - hypothetical protein, at 640,250 to 640,474
_RS03395
MMJJ_RS09300: MMJJ_RS09300 - hypothetical protein, at 640,487 to 640,660
_RS09300
MMJJ_RS03400: MMJJ_RS03400 - hypothetical protein, at 640,672 to 640,908
_RS03400
MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241
_RS03405
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 638.887 kb on - strand, within MMJJ_RS03370 at 638.888 kb on + strand, within MMJJ_RS03370 at 638.891 kb on - strand, within MMJJ_RS03370 at 638.892 kb on + strand, within MMJJ_RS03370 at 638.922 kb on - strand at 638.923 kb on + strand at 638.943 kb on - strand at 638.943 kb on - strand at 638.951 kb on + strand at 638.988 kb on - strand, within MMJJ_RS03375 at 639.039 kb on + strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.078 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.080 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.121 kb on - strand, within MMJJ_RS03375 at 639.129 kb on - strand, within MMJJ_RS03375 at 639.169 kb on + strand at 639.169 kb on + strand at 639.190 kb on - strand at 639.206 kb on - strand at 639.206 kb on - strand at 639.209 kb on - strand at 639.210 kb on + strand at 639.213 kb on + strand at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.308 kb on - strand, within MMJJ_RS03380 at 639.309 kb on + strand, within MMJJ_RS03380 at 639.312 kb on - strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.313 kb on + strand, within MMJJ_RS03380 at 639.320 kb on - strand, within MMJJ_RS03380 at 639.505 kb on + strand, within MMJJ_RS03385 at 639.523 kb on + strand at 639.563 kb on - strand, within MMJJ_RS03385 at 639.575 kb on + strand, within MMJJ_RS03385 at 639.591 kb on - strand, within MMJJ_RS03385 at 639.592 kb on + strand, within MMJJ_RS03385 at 639.623 kb on + strand, within MMJJ_RS03385 at 639.652 kb on + strand, within MMJJ_RS03385 at 639.690 kb on + strand, within MMJJ_RS03385 at 639.694 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.715 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.743 kb on - strand, within MMJJ_RS03385 at 639.744 kb on + strand, within MMJJ_RS03385 at 639.747 kb on - strand, within MMJJ_RS03385 at 639.748 kb on + strand, within MMJJ_RS03385 at 639.862 kb on + strand, within MMJJ_RS03390 at 640.071 kb on - strand at 640.072 kb on + strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.075 kb on - strand at 640.077 kb on - strand at 640.111 kb on - strand, within MMJJ_RS09295 at 640.330 kb on - strand, within MMJJ_RS03395 at 640.330 kb on - strand, within MMJJ_RS03395 at 640.332 kb on - strand, within MMJJ_RS03395 at 640.332 kb on - strand, within MMJJ_RS03395 at 640.333 kb on + strand, within MMJJ_RS03395 at 640.456 kb on - strand at 640.457 kb on + strand at 640.462 kb on - strand at 640.488 kb on - strand at 640.488 kb on - strand at 640.489 kb on + strand at 640.500 kb on + strand at 640.577 kb on - strand, within MMJJ_RS09300 at 640.640 kb on - strand, within MMJJ_RS09300
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 638,887 - MMJJ_RS03370 0.82 -0.9 638,888 + MMJJ_RS03370 0.82 -2.1 638,891 - MMJJ_RS03370 0.83 -0.7 638,892 + MMJJ_RS03370 0.83 -0.9 638,922 - +2.1 638,923 + -0.4 638,943 - -2.5 638,943 - -1.3 638,951 + +1.8 638,988 - MMJJ_RS03375 0.11 -0.2 639,039 + MMJJ_RS03375 0.39 -2.5 639,078 - MMJJ_RS03375 0.60 +0.2 639,078 - MMJJ_RS03375 0.60 -1.0 639,080 - MMJJ_RS03375 0.61 +0.8 639,080 - MMJJ_RS03375 0.61 -3.0 639,121 - MMJJ_RS03375 0.83 -0.3 639,121 - MMJJ_RS03375 0.83 +1.1 639,129 - MMJJ_RS03375 0.87 +1.7 639,169 + -0.8 639,169 + +1.5 639,190 - +3.1 639,206 - +2.8 639,206 - +0.9 639,209 - +0.5 639,210 + -1.9 639,213 + -0.8 639,308 - MMJJ_RS03380 0.38 +0.2 639,308 - MMJJ_RS03380 0.38 +0.0 639,308 - MMJJ_RS03380 0.38 -2.7 639,309 + MMJJ_RS03380 0.38 +2.2 639,312 - MMJJ_RS03380 0.40 -2.9 639,313 + MMJJ_RS03380 0.40 -1.3 639,313 + MMJJ_RS03380 0.40 -1.6 639,320 - MMJJ_RS03380 0.43 -2.5 639,505 + MMJJ_RS03385 0.12 -1.7 639,523 + +3.8 639,563 - MMJJ_RS03385 0.28 -0.1 639,575 + MMJJ_RS03385 0.31 +1.6 639,591 - MMJJ_RS03385 0.36 -1.1 639,592 + MMJJ_RS03385 0.36 +2.2 639,623 + MMJJ_RS03385 0.45 -1.3 639,652 + MMJJ_RS03385 0.52 -1.6 639,690 + MMJJ_RS03385 0.63 -1.8 639,694 - MMJJ_RS03385 0.64 -0.7 639,715 - MMJJ_RS03385 0.70 -0.8 639,715 - MMJJ_RS03385 0.70 -3.5 639,743 - MMJJ_RS03385 0.77 +2.0 639,743 - MMJJ_RS03385 0.77 -2.7 639,744 + MMJJ_RS03385 0.78 +1.1 639,747 - MMJJ_RS03385 0.78 -1.1 639,748 + MMJJ_RS03385 0.79 -2.2 639,862 + MMJJ_RS03390 0.15 +1.2 640,071 - +0.9 640,072 + +0.6 640,075 - +2.6 640,075 - +3.0 640,075 - +1.2 640,075 - +0.5 640,075 - +1.2 640,075 - -0.1 640,077 - +0.8 640,111 - MMJJ_RS09295 0.26 -0.3 640,330 - MMJJ_RS03395 0.36 -1.2 640,330 - MMJJ_RS03395 0.36 -0.1 640,332 - MMJJ_RS03395 0.36 -0.1 640,332 - MMJJ_RS03395 0.36 +1.0 640,333 + MMJJ_RS03395 0.37 -0.5 640,456 - +1.2 640,457 + +0.8 640,462 - -2.2 640,488 - +2.4 640,488 - -2.0 640,489 + -0.8 640,500 + +1.9 640,577 - MMJJ_RS09300 0.52 -1.4 640,640 - MMJJ_RS09300 0.88 +0.6
Or see this region's nucleotide sequence