Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02380

Experiment: McCas_formate_complete Rifampicin 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02375 and MMJJ_RS02380 are separated by 9 nucleotidesMMJJ_RS02380 and MMJJ_RS02385 are separated by 11 nucleotides MMJJ_RS02375: MMJJ_RS02375 - site-specific integrase, at 448,645 to 449,469 _RS02375 MMJJ_RS02380: MMJJ_RS02380 - hypothetical protein, at 449,479 to 450,147 _RS02380 MMJJ_RS02385: MMJJ_RS02385 - hypothetical protein, at 450,159 to 451,604 _RS02385 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 448.713 kb on - strandat 448.713 kb on - strandat 448.725 kb on - strandat 448.725 kb on - strandat 448.761 kb on - strand, within MMJJ_RS02375at 448.762 kb on + strand, within MMJJ_RS02375at 448.789 kb on + strand, within MMJJ_RS02375at 448.789 kb on + strand, within MMJJ_RS02375at 448.791 kb on - strand, within MMJJ_RS02375at 448.894 kb on - strand, within MMJJ_RS02375at 448.894 kb on - strand, within MMJJ_RS02375at 448.895 kb on + strand, within MMJJ_RS02375at 448.905 kb on + strand, within MMJJ_RS02375at 448.919 kb on - strand, within MMJJ_RS02375at 448.920 kb on + strand, within MMJJ_RS02375at 448.937 kb on - strand, within MMJJ_RS02375at 448.938 kb on + strand, within MMJJ_RS02375at 448.938 kb on + strand, within MMJJ_RS02375at 448.938 kb on + strand, within MMJJ_RS02375at 448.950 kb on - strand, within MMJJ_RS02375at 448.951 kb on + strand, within MMJJ_RS02375at 449.033 kb on - strand, within MMJJ_RS02375at 449.034 kb on + strand, within MMJJ_RS02375at 449.034 kb on + strand, within MMJJ_RS02375at 449.075 kb on - strand, within MMJJ_RS02375at 449.091 kb on - strand, within MMJJ_RS02375at 449.111 kb on - strand, within MMJJ_RS02375at 449.111 kb on - strand, within MMJJ_RS02375at 449.130 kb on + strand, within MMJJ_RS02375at 449.139 kb on + strand, within MMJJ_RS02375at 449.143 kb on - strand, within MMJJ_RS02375at 449.144 kb on + strand, within MMJJ_RS02375at 449.144 kb on + strand, within MMJJ_RS02375at 449.144 kb on + strand, within MMJJ_RS02375at 449.144 kb on + strand, within MMJJ_RS02375at 449.144 kb on + strand, within MMJJ_RS02375at 449.146 kb on - strand, within MMJJ_RS02375at 449.146 kb on - strand, within MMJJ_RS02375at 449.155 kb on - strand, within MMJJ_RS02375at 449.155 kb on - strand, within MMJJ_RS02375at 449.155 kb on - strand, within MMJJ_RS02375at 449.175 kb on - strand, within MMJJ_RS02375at 449.176 kb on + strand, within MMJJ_RS02375at 449.176 kb on + strand, within MMJJ_RS02375at 449.176 kb on + strand, within MMJJ_RS02375at 449.237 kb on - strand, within MMJJ_RS02375at 449.313 kb on + strand, within MMJJ_RS02375at 449.337 kb on + strand, within MMJJ_RS02375at 449.358 kb on + strand, within MMJJ_RS02375at 449.362 kb on + strand, within MMJJ_RS02375at 449.366 kb on - strand, within MMJJ_RS02375at 449.532 kb on - strandat 449.539 kb on - strandat 449.539 kb on - strandat 449.540 kb on + strandat 449.560 kb on - strand, within MMJJ_RS02380at 449.560 kb on - strand, within MMJJ_RS02380at 449.561 kb on + strand, within MMJJ_RS02380at 449.566 kb on + strand, within MMJJ_RS02380at 449.568 kb on + strand, within MMJJ_RS02380at 449.606 kb on - strand, within MMJJ_RS02380at 449.606 kb on - strand, within MMJJ_RS02380at 449.607 kb on + strand, within MMJJ_RS02380at 449.607 kb on + strand, within MMJJ_RS02380at 449.650 kb on + strand, within MMJJ_RS02380at 449.673 kb on - strand, within MMJJ_RS02380at 449.673 kb on - strand, within MMJJ_RS02380at 449.673 kb on - strand, within MMJJ_RS02380at 449.674 kb on + strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.677 kb on - strand, within MMJJ_RS02380at 449.678 kb on + strand, within MMJJ_RS02380at 449.678 kb on + strand, within MMJJ_RS02380at 449.678 kb on + strand, within MMJJ_RS02380at 449.678 kb on + strand, within MMJJ_RS02380at 449.728 kb on - strand, within MMJJ_RS02380at 449.729 kb on + strand, within MMJJ_RS02380at 449.759 kb on - strand, within MMJJ_RS02380at 449.759 kb on - strand, within MMJJ_RS02380at 449.760 kb on + strand, within MMJJ_RS02380at 449.760 kb on + strand, within MMJJ_RS02380at 449.760 kb on + strand, within MMJJ_RS02380at 449.763 kb on - strand, within MMJJ_RS02380at 449.763 kb on - strand, within MMJJ_RS02380at 449.763 kb on - strand, within MMJJ_RS02380at 449.763 kb on - strand, within MMJJ_RS02380at 449.763 kb on - strand, within MMJJ_RS02380at 449.764 kb on + strand, within MMJJ_RS02380at 449.764 kb on + strandat 449.764 kb on + strand, within MMJJ_RS02380at 449.764 kb on + strand, within MMJJ_RS02380at 449.764 kb on + strand, within MMJJ_RS02380at 449.764 kb on + strand, within MMJJ_RS02380at 449.764 kb on + strandat 449.802 kb on - strand, within MMJJ_RS02380at 449.880 kb on - strand, within MMJJ_RS02380at 449.880 kb on - strand, within MMJJ_RS02380at 449.922 kb on + strand, within MMJJ_RS02380at 449.928 kb on - strand, within MMJJ_RS02380at 449.957 kb on - strand, within MMJJ_RS02380at 449.958 kb on + strand, within MMJJ_RS02380at 449.958 kb on + strand, within MMJJ_RS02380at 449.958 kb on + strand, within MMJJ_RS02380at 449.973 kb on - strand, within MMJJ_RS02380at 449.996 kb on - strand, within MMJJ_RS02380at 449.997 kb on + strand, within MMJJ_RS02380at 450.011 kb on - strand, within MMJJ_RS02380at 450.011 kb on - strand, within MMJJ_RS02380at 450.012 kb on + strand, within MMJJ_RS02380at 450.046 kb on + strand, within MMJJ_RS02380at 450.047 kb on - strand, within MMJJ_RS02380at 450.069 kb on + strand, within MMJJ_RS02380at 450.098 kb on - strandat 450.153 kb on - strandat 450.154 kb on + strandat 450.154 kb on + strandat 450.154 kb on + strandat 450.158 kb on + strandat 450.161 kb on + strandat 450.170 kb on - strandat 450.170 kb on - strandat 450.191 kb on - strandat 450.192 kb on + strandat 450.192 kb on + strandat 450.192 kb on + strandat 450.192 kb on + strandat 450.193 kb on - strandat 450.193 kb on - strandat 450.193 kb on - strandat 450.193 kb on - strandat 450.193 kb on - strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.194 kb on + strandat 450.198 kb on + strandat 450.198 kb on + strandat 450.227 kb on - strandat 450.228 kb on + strandat 450.228 kb on + strandat 450.228 kb on + strandat 450.228 kb on + strandat 450.234 kb on + strandat 450.237 kb on - strandat 450.238 kb on + strandat 450.246 kb on + strandat 450.250 kb on + strandat 450.276 kb on - strandat 450.302 kb on - strandat 450.304 kb on - strand, within MMJJ_RS02385at 450.304 kb on - strand, within MMJJ_RS02385at 450.305 kb on + strand, within MMJJ_RS02385at 450.305 kb on + strand, within MMJJ_RS02385at 450.323 kb on - strand, within MMJJ_RS02385at 450.353 kb on + strand, within MMJJ_RS02385at 450.353 kb on + strand, within MMJJ_RS02385at 450.375 kb on - strand, within MMJJ_RS02385at 450.375 kb on - strand, within MMJJ_RS02385at 450.389 kb on - strand, within MMJJ_RS02385at 450.410 kb on - strand, within MMJJ_RS02385at 450.441 kb on - strand, within MMJJ_RS02385at 450.528 kb on - strand, within MMJJ_RS02385at 450.532 kb on + strand, within MMJJ_RS02385at 450.567 kb on - strand, within MMJJ_RS02385at 450.615 kb on - strand, within MMJJ_RS02385at 450.620 kb on - strand, within MMJJ_RS02385at 450.620 kb on - strand, within MMJJ_RS02385at 450.628 kb on - strand, within MMJJ_RS02385at 450.628 kb on - strand, within MMJJ_RS02385at 450.647 kb on - strand, within MMJJ_RS02385at 450.679 kb on + strand, within MMJJ_RS02385at 450.679 kb on + strand, within MMJJ_RS02385at 450.727 kb on + strand, within MMJJ_RS02385at 450.727 kb on + strand, within MMJJ_RS02385at 450.736 kb on - strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.737 kb on + strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.741 kb on - strand, within MMJJ_RS02385at 450.742 kb on + strand, within MMJJ_RS02385at 450.742 kb on + strand, within MMJJ_RS02385at 450.744 kb on + strand, within MMJJ_RS02385at 450.771 kb on - strand, within MMJJ_RS02385at 450.774 kb on + strand, within MMJJ_RS02385at 450.795 kb on - strand, within MMJJ_RS02385at 450.823 kb on + strand, within MMJJ_RS02385at 450.823 kb on + strand, within MMJJ_RS02385at 450.857 kb on - strand, within MMJJ_RS02385at 450.903 kb on - strand, within MMJJ_RS02385at 450.926 kb on + strand, within MMJJ_RS02385at 450.946 kb on - strand, within MMJJ_RS02385at 450.961 kb on - strand, within MMJJ_RS02385at 450.962 kb on + strand, within MMJJ_RS02385at 450.962 kb on + strand, within MMJJ_RS02385at 450.992 kb on - strand, within MMJJ_RS02385at 450.995 kb on + strand, within MMJJ_RS02385at 451.002 kb on - strand, within MMJJ_RS02385at 451.059 kb on + strand, within MMJJ_RS02385at 451.059 kb on + strand, within MMJJ_RS02385at 451.068 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.080 kb on - strand, within MMJJ_RS02385at 451.082 kb on - strand, within MMJJ_RS02385

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM
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448,713 - -1.5
448,713 - -1.7
448,725 - +0.1
448,725 - -1.5
448,761 - MMJJ_RS02375 0.14 +1.5
448,762 + MMJJ_RS02375 0.14 -1.4
448,789 + MMJJ_RS02375 0.17 +1.0
448,789 + MMJJ_RS02375 0.17 -2.3
448,791 - MMJJ_RS02375 0.18 +0.6
448,894 - MMJJ_RS02375 0.30 -1.3
448,894 - MMJJ_RS02375 0.30 +0.6
448,895 + MMJJ_RS02375 0.30 -3.4
448,905 + MMJJ_RS02375 0.32 -0.7
448,919 - MMJJ_RS02375 0.33 +1.5
448,920 + MMJJ_RS02375 0.33 +0.8
448,937 - MMJJ_RS02375 0.35 -1.2
448,938 + MMJJ_RS02375 0.36 +0.7
448,938 + MMJJ_RS02375 0.36 +2.2
448,938 + MMJJ_RS02375 0.36 +3.9
448,950 - MMJJ_RS02375 0.37 -1.3
448,951 + MMJJ_RS02375 0.37 -2.6
449,033 - MMJJ_RS02375 0.47 -2.0
449,034 + MMJJ_RS02375 0.47 -0.3
449,034 + MMJJ_RS02375 0.47 -0.5
449,075 - MMJJ_RS02375 0.52 +0.6
449,091 - MMJJ_RS02375 0.54 +3.9
449,111 - MMJJ_RS02375 0.56 -0.5
449,111 - MMJJ_RS02375 0.56 +2.5
449,130 + MMJJ_RS02375 0.59 -2.0
449,139 + MMJJ_RS02375 0.60 +1.0
449,143 - MMJJ_RS02375 0.60 -1.9
449,144 + MMJJ_RS02375 0.60 -2.6
449,144 + MMJJ_RS02375 0.60 -0.6
449,144 + MMJJ_RS02375 0.60 -0.7
449,144 + MMJJ_RS02375 0.60 +2.3
449,144 + MMJJ_RS02375 0.60 -0.9
449,146 - MMJJ_RS02375 0.61 -0.7
449,146 - MMJJ_RS02375 0.61 +0.2
449,155 - MMJJ_RS02375 0.62 -1.7
449,155 - MMJJ_RS02375 0.62 +3.2
449,155 - MMJJ_RS02375 0.62 -0.2
449,175 - MMJJ_RS02375 0.64 +1.2
449,176 + MMJJ_RS02375 0.64 -1.3
449,176 + MMJJ_RS02375 0.64 -1.4
449,176 + MMJJ_RS02375 0.64 -2.1
449,237 - MMJJ_RS02375 0.72 +0.7
449,313 + MMJJ_RS02375 0.81 -0.4
449,337 + MMJJ_RS02375 0.84 -1.8
449,358 + MMJJ_RS02375 0.86 +0.8
449,362 + MMJJ_RS02375 0.87 -0.8
449,366 - MMJJ_RS02375 0.87 -0.4
449,532 - +1.0
449,539 - -0.6
449,539 - +2.3
449,540 + +2.0
449,560 - MMJJ_RS02380 0.12 +1.8
449,560 - MMJJ_RS02380 0.12 +0.6
449,561 + MMJJ_RS02380 0.12 -0.7
449,566 + MMJJ_RS02380 0.13 +1.9
449,568 + MMJJ_RS02380 0.13 +0.0
449,606 - MMJJ_RS02380 0.19 -2.1
449,606 - MMJJ_RS02380 0.19 -0.2
449,607 + MMJJ_RS02380 0.19 -3.0
449,607 + MMJJ_RS02380 0.19 +2.0
449,650 + MMJJ_RS02380 0.26 +3.0
449,673 - MMJJ_RS02380 0.29 +0.6
449,673 - MMJJ_RS02380 0.29 -2.1
449,673 - MMJJ_RS02380 0.29 +2.1
449,674 + MMJJ_RS02380 0.29 -1.0
449,677 - MMJJ_RS02380 0.30 +0.8
449,677 - MMJJ_RS02380 0.30 -1.6
449,677 - MMJJ_RS02380 0.30 +2.5
449,677 - MMJJ_RS02380 0.30 +0.0
449,677 - MMJJ_RS02380 0.30 +1.4
449,677 - MMJJ_RS02380 0.30 -2.2
449,678 + MMJJ_RS02380 0.30 +1.9
449,678 + MMJJ_RS02380 0.30 -1.3
449,678 + MMJJ_RS02380 0.30 -1.8
449,678 + MMJJ_RS02380 0.30 +0.7
449,728 - MMJJ_RS02380 0.37 -0.9
449,729 + MMJJ_RS02380 0.37 -0.6
449,759 - MMJJ_RS02380 0.42 +2.2
449,759 - MMJJ_RS02380 0.42 +2.1
449,760 + MMJJ_RS02380 0.42 -2.8
449,760 + MMJJ_RS02380 0.42 -1.6
449,760 + MMJJ_RS02380 0.42 -1.2
449,763 - MMJJ_RS02380 0.42 +0.1
449,763 - MMJJ_RS02380 0.42 +2.1
449,763 - MMJJ_RS02380 0.42 +1.7
449,763 - MMJJ_RS02380 0.42 +2.7
449,763 - MMJJ_RS02380 0.42 +0.6
449,764 + MMJJ_RS02380 0.43 -0.8
449,764 + +0.6
449,764 + MMJJ_RS02380 0.43 -0.9
449,764 + MMJJ_RS02380 0.43 +2.3
449,764 + MMJJ_RS02380 0.43 +0.7
449,764 + MMJJ_RS02380 0.43 +0.8
449,764 + +2.1
449,802 - MMJJ_RS02380 0.48 -0.4
449,880 - MMJJ_RS02380 0.60 +1.6
449,880 - MMJJ_RS02380 0.60 -0.0
449,922 + MMJJ_RS02380 0.66 -2.0
449,928 - MMJJ_RS02380 0.67 +4.2
449,957 - MMJJ_RS02380 0.71 +2.5
449,958 + MMJJ_RS02380 0.72 +1.6
449,958 + MMJJ_RS02380 0.72 +2.2
449,958 + MMJJ_RS02380 0.72 -1.0
449,973 - MMJJ_RS02380 0.74 -1.4
449,996 - MMJJ_RS02380 0.77 +3.4
449,997 + MMJJ_RS02380 0.77 +0.6
450,011 - MMJJ_RS02380 0.80 +1.0
450,011 - MMJJ_RS02380 0.80 +0.2
450,012 + MMJJ_RS02380 0.80 -0.4
450,046 + MMJJ_RS02380 0.85 +0.4
450,047 - MMJJ_RS02380 0.85 -0.6
450,069 + MMJJ_RS02380 0.88 -3.5
450,098 - -2.4
450,153 - +1.7
450,154 + -0.8
450,154 + +3.6
450,154 + -0.7
450,158 + +1.1
450,161 + -0.9
450,170 - +0.4
450,170 - -1.1
450,191 - +0.6
450,192 + +0.0
450,192 + -1.3
450,192 + -0.7
450,192 + -0.6
450,193 - -1.4
450,193 - +3.0
450,193 - +2.8
450,193 - +0.1
450,193 - +1.1
450,194 + +1.8
450,194 + +0.6
450,194 + -1.3
450,194 + +1.8
450,194 + +0.4
450,194 + +0.1
450,194 + -0.9
450,198 + +0.6
450,198 + -1.9
450,227 - +0.6
450,228 + +1.2
450,228 + -0.4
450,228 + -0.7
450,228 + -0.6
450,234 + -1.7
450,237 - -0.7
450,238 + -1.6
450,246 + -2.1
450,250 + +1.7
450,276 - -3.9
450,302 - -1.6
450,304 - MMJJ_RS02385 0.10 -2.1
450,304 - MMJJ_RS02385 0.10 -0.6
450,305 + MMJJ_RS02385 0.10 -1.9
450,305 + MMJJ_RS02385 0.10 -1.4
450,323 - MMJJ_RS02385 0.11 -2.5
450,353 + MMJJ_RS02385 0.13 +1.1
450,353 + MMJJ_RS02385 0.13 -1.7
450,375 - MMJJ_RS02385 0.15 +0.3
450,375 - MMJJ_RS02385 0.15 +1.1
450,389 - MMJJ_RS02385 0.16 -2.8
450,410 - MMJJ_RS02385 0.17 +1.4
450,441 - MMJJ_RS02385 0.20 -1.8
450,528 - MMJJ_RS02385 0.26 -3.3
450,532 + MMJJ_RS02385 0.26 +0.2
450,567 - MMJJ_RS02385 0.28 -0.0
450,615 - MMJJ_RS02385 0.32 -0.4
450,620 - MMJJ_RS02385 0.32 +4.4
450,620 - MMJJ_RS02385 0.32 +2.6
450,628 - MMJJ_RS02385 0.32 +0.1
450,628 - MMJJ_RS02385 0.32 -1.3
450,647 - MMJJ_RS02385 0.34 +0.6
450,679 + MMJJ_RS02385 0.36 +1.0
450,679 + MMJJ_RS02385 0.36 -1.2
450,727 + MMJJ_RS02385 0.39 +1.7
450,727 + MMJJ_RS02385 0.39 +0.8
450,736 - MMJJ_RS02385 0.40 +1.4
450,737 + MMJJ_RS02385 0.40 -2.6
450,737 + MMJJ_RS02385 0.40 +0.1
450,737 + MMJJ_RS02385 0.40 -0.6
450,741 - MMJJ_RS02385 0.40 +1.9
450,741 - MMJJ_RS02385 0.40 +0.9
450,741 - MMJJ_RS02385 0.40 -2.2
450,742 + MMJJ_RS02385 0.40 -3.0
450,742 + MMJJ_RS02385 0.40 -0.2
450,744 + MMJJ_RS02385 0.40 -0.1
450,771 - MMJJ_RS02385 0.42 +0.4
450,774 + MMJJ_RS02385 0.43 -0.3
450,795 - MMJJ_RS02385 0.44 -1.9
450,823 + MMJJ_RS02385 0.46 -1.7
450,823 + MMJJ_RS02385 0.46 +2.1
450,857 - MMJJ_RS02385 0.48 -1.6
450,903 - MMJJ_RS02385 0.51 -1.7
450,926 + MMJJ_RS02385 0.53 -0.8
450,946 - MMJJ_RS02385 0.54 -2.1
450,961 - MMJJ_RS02385 0.55 +0.9
450,962 + MMJJ_RS02385 0.56 -0.2
450,962 + MMJJ_RS02385 0.56 -0.1
450,992 - MMJJ_RS02385 0.58 +0.0
450,995 + MMJJ_RS02385 0.58 -2.7
451,002 - MMJJ_RS02385 0.58 -0.1
451,059 + MMJJ_RS02385 0.62 -0.5
451,059 + MMJJ_RS02385 0.62 +0.1
451,068 - MMJJ_RS02385 0.63 +2.3
451,080 - MMJJ_RS02385 0.64 -1.6
451,080 - MMJJ_RS02385 0.64 +0.0
451,080 - MMJJ_RS02385 0.64 -1.4
451,080 - MMJJ_RS02385 0.64 -1.8
451,080 - MMJJ_RS02385 0.64 +4.1
451,080 - MMJJ_RS02385 0.64 -1.7
451,080 - MMJJ_RS02385 0.64 +2.8
451,080 - MMJJ_RS02385 0.64 -0.9
451,082 - MMJJ_RS02385 0.64 -1.8

Or see this region's nucleotide sequence