Experiment: McCas_formate_complete Rifampicin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00745 and MMJJ_RS00750 are separated by 34 nucleotides MMJJ_RS00750 and MMJJ_RS00755 are separated by 61 nucleotides MMJJ_RS00755 and MMJJ_RS00760 are separated by 98 nucleotides MMJJ_RS00760 and MMJJ_RS00765 are separated by 59 nucleotides
MMJJ_RS00745: MMJJ_RS00745 - hypothetical protein, at 143,824 to 144,180
_RS00745
MMJJ_RS00750: MMJJ_RS00750 - Bax inhibitor-1/YccA family protein, at 144,215 to 144,949
_RS00750
MMJJ_RS00755: MMJJ_RS00755 - hypothetical protein, at 145,011 to 145,238
_RS00755
MMJJ_RS00760: MMJJ_RS00760 - hypothetical protein, at 145,337 to 145,735
_RS00760
MMJJ_RS00765: MMJJ_RS00765 - DUF4013 domain-containing protein, at 145,795 to 146,640
_RS00765
Position (kb) 145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.196 kb on + strand at 144.197 kb on - strand at 144.197 kb on - strand at 144.198 kb on + strand at 144.198 kb on + strand at 144.201 kb on - strand at 144.202 kb on + strand at 144.205 kb on + strand at 144.205 kb on + strand at 144.208 kb on + strand at 144.208 kb on + strand at 144.217 kb on + strand at 144.261 kb on - strand at 144.262 kb on + strand at 144.263 kb on - strand at 144.273 kb on + strand at 144.310 kb on - strand, within MMJJ_RS00750 at 144.310 kb on - strand, within MMJJ_RS00750 at 144.311 kb on + strand, within MMJJ_RS00750 at 144.312 kb on - strand, within MMJJ_RS00750 at 144.313 kb on + strand, within MMJJ_RS00750 at 144.347 kb on + strand, within MMJJ_RS00750 at 144.383 kb on - strand, within MMJJ_RS00750 at 144.384 kb on + strand, within MMJJ_RS00750 at 144.387 kb on + strand at 144.405 kb on + strand, within MMJJ_RS00750 at 144.405 kb on + strand, within MMJJ_RS00750 at 144.405 kb on + strand, within MMJJ_RS00750 at 144.407 kb on - strand, within MMJJ_RS00750 at 144.431 kb on - strand, within MMJJ_RS00750 at 144.442 kb on - strand, within MMJJ_RS00750 at 144.443 kb on + strand, within MMJJ_RS00750 at 144.447 kb on + strand, within MMJJ_RS00750 at 144.467 kb on - strand, within MMJJ_RS00750 at 144.468 kb on + strand, within MMJJ_RS00750 at 144.481 kb on + strand, within MMJJ_RS00750 at 144.481 kb on + strand, within MMJJ_RS00750 at 144.482 kb on - strand, within MMJJ_RS00750 at 144.482 kb on - strand, within MMJJ_RS00750 at 144.482 kb on - strand, within MMJJ_RS00750 at 144.482 kb on - strand, within MMJJ_RS00750 at 144.483 kb on + strand, within MMJJ_RS00750 at 144.483 kb on + strand, within MMJJ_RS00750 at 144.493 kb on - strand, within MMJJ_RS00750 at 144.513 kb on + strand, within MMJJ_RS00750 at 144.770 kb on - strand, within MMJJ_RS00750 at 144.772 kb on - strand, within MMJJ_RS00750 at 144.831 kb on + strand, within MMJJ_RS00750 at 144.831 kb on + strand, within MMJJ_RS00750 at 144.845 kb on - strand, within MMJJ_RS00750 at 144.910 kb on - strand at 144.911 kb on + strand at 144.916 kb on - strand at 144.916 kb on - strand at 144.938 kb on + strand at 144.938 kb on + strand at 144.949 kb on - strand at 144.953 kb on - strand at 144.954 kb on + strand at 144.995 kb on + strand at 144.996 kb on - strand at 144.996 kb on - strand at 145.066 kb on + strand, within MMJJ_RS00755 at 145.074 kb on + strand, within MMJJ_RS00755 at 145.106 kb on - strand, within MMJJ_RS00755 at 145.137 kb on - strand, within MMJJ_RS00755 at 145.137 kb on - strand, within MMJJ_RS00755 at 145.138 kb on + strand, within MMJJ_RS00755 at 145.146 kb on + strand, within MMJJ_RS00755 at 145.164 kb on - strand, within MMJJ_RS00755 at 145.164 kb on - strand, within MMJJ_RS00755 at 145.164 kb on - strand, within MMJJ_RS00755 at 145.165 kb on + strand, within MMJJ_RS00755 at 145.182 kb on + strand, within MMJJ_RS00755 at 145.184 kb on + strand, within MMJJ_RS00755 at 145.187 kb on - strand, within MMJJ_RS00755 at 145.190 kb on - strand, within MMJJ_RS00755 at 145.190 kb on - strand, within MMJJ_RS00755 at 145.191 kb on + strand, within MMJJ_RS00755 at 145.191 kb on + strand, within MMJJ_RS00755 at 145.193 kb on + strand, within MMJJ_RS00755 at 145.193 kb on + strand, within MMJJ_RS00755 at 145.193 kb on + strand, within MMJJ_RS00755 at 145.230 kb on + strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.240 kb on - strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.241 kb on + strand at 145.242 kb on - strand at 145.243 kb on + strand at 145.264 kb on - strand at 145.265 kb on + strand at 145.268 kb on - strand at 145.268 kb on - strand at 145.269 kb on + strand at 145.269 kb on + strand at 145.271 kb on + strand at 145.271 kb on + strand at 145.271 kb on + strand at 145.277 kb on - strand at 145.286 kb on - strand at 145.330 kb on + strand at 145.332 kb on - strand at 145.333 kb on + strand at 145.402 kb on - strand, within MMJJ_RS00760 at 145.402 kb on - strand, within MMJJ_RS00760 at 145.403 kb on + strand, within MMJJ_RS00760 at 145.407 kb on + strand, within MMJJ_RS00760 at 145.407 kb on + strand, within MMJJ_RS00760 at 145.407 kb on + strand, within MMJJ_RS00760 at 145.407 kb on + strand, within MMJJ_RS00760 at 145.407 kb on + strand, within MMJJ_RS00760 at 145.408 kb on - strand, within MMJJ_RS00760 at 145.409 kb on + strand, within MMJJ_RS00760 at 145.417 kb on - strand, within MMJJ_RS00760 at 145.417 kb on - strand, within MMJJ_RS00760 at 145.431 kb on - strand, within MMJJ_RS00760 at 145.432 kb on + strand, within MMJJ_RS00760 at 145.432 kb on + strand, within MMJJ_RS00760 at 145.432 kb on + strand, within MMJJ_RS00760 at 145.433 kb on - strand, within MMJJ_RS00760 at 145.433 kb on - strand, within MMJJ_RS00760 at 145.484 kb on - strand, within MMJJ_RS00760 at 145.523 kb on - strand, within MMJJ_RS00760 at 145.524 kb on + strand, within MMJJ_RS00760 at 145.561 kb on - strand, within MMJJ_RS00760 at 145.602 kb on + strand, within MMJJ_RS00760 at 145.618 kb on - strand, within MMJJ_RS00760 at 145.637 kb on - strand, within MMJJ_RS00760 at 145.637 kb on - strand, within MMJJ_RS00760 at 145.637 kb on - strand, within MMJJ_RS00760 at 145.637 kb on - strand, within MMJJ_RS00760 at 145.638 kb on + strand, within MMJJ_RS00760 at 145.647 kb on + strand, within MMJJ_RS00760 at 145.684 kb on - strand, within MMJJ_RS00760 at 145.685 kb on + strand, within MMJJ_RS00760 at 145.688 kb on - strand, within MMJJ_RS00760 at 145.688 kb on - strand, within MMJJ_RS00760 at 145.688 kb on - strand, within MMJJ_RS00760 at 145.689 kb on + strand, within MMJJ_RS00760 at 145.689 kb on + strand, within MMJJ_RS00760 at 145.689 kb on + strand, within MMJJ_RS00760 at 145.690 kb on - strand, within MMJJ_RS00760 at 145.690 kb on - strand, within MMJJ_RS00760 at 145.690 kb on - strand, within MMJJ_RS00760 at 145.690 kb on - strand, within MMJJ_RS00760 at 145.691 kb on + strand, within MMJJ_RS00760 at 145.691 kb on + strand, within MMJJ_RS00760 at 145.691 kb on + strand, within MMJJ_RS00760 at 145.691 kb on + strand, within MMJJ_RS00760 at 145.729 kb on + strand at 145.729 kb on + strand at 145.754 kb on - strand at 145.755 kb on + strand at 145.757 kb on + strand at 145.760 kb on - strand at 145.766 kb on - strand at 145.769 kb on + strand at 145.769 kb on + strand at 145.772 kb on + strand at 145.798 kb on - strand at 145.856 kb on - strand at 145.872 kb on + strand at 145.909 kb on + strand, within MMJJ_RS00765 at 145.930 kb on - strand, within MMJJ_RS00765 at 145.931 kb on + strand, within MMJJ_RS00765 at 145.973 kb on - strand, within MMJJ_RS00765 at 145.974 kb on + strand, within MMJJ_RS00765 at 146.059 kb on - strand, within MMJJ_RS00765 at 146.059 kb on - strand, within MMJJ_RS00765 at 146.059 kb on - strand, within MMJJ_RS00765 at 146.059 kb on - strand, within MMJJ_RS00765 at 146.064 kb on - strand, within MMJJ_RS00765 at 146.064 kb on - strand, within MMJJ_RS00765 at 146.065 kb on + strand, within MMJJ_RS00765 at 146.070 kb on - strand, within MMJJ_RS00765 at 146.070 kb on - strand, within MMJJ_RS00765 at 146.079 kb on + strand, within MMJJ_RS00765 at 146.153 kb on + strand, within MMJJ_RS00765 at 146.169 kb on - strand, within MMJJ_RS00765 at 146.170 kb on + strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.171 kb on - strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.172 kb on + strand, within MMJJ_RS00765 at 146.173 kb on - strand, within MMJJ_RS00765 at 146.174 kb on + strand, within MMJJ_RS00765 at 146.182 kb on + strand, within MMJJ_RS00765 at 146.206 kb on - strand, within MMJJ_RS00765 at 146.206 kb on - strand, within MMJJ_RS00765 at 146.207 kb on + strand, within MMJJ_RS00765 at 146.237 kb on - strand, within MMJJ_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM remove 144,196 + +2.9 144,197 - +3.4 144,197 - +1.4 144,198 + -1.6 144,198 + -0.0 144,201 - -2.4 144,202 + -1.3 144,205 + -3.0 144,205 + -2.7 144,208 + +1.2 144,208 + -2.4 144,217 + +1.0 144,261 - -1.9 144,262 + +0.5 144,263 - +0.4 144,273 + -1.0 144,310 - MMJJ_RS00750 0.13 +1.9 144,310 - MMJJ_RS00750 0.13 +1.6 144,311 + MMJJ_RS00750 0.13 +1.4 144,312 - MMJJ_RS00750 0.13 +0.3 144,313 + MMJJ_RS00750 0.13 -1.8 144,347 + MMJJ_RS00750 0.18 -0.6 144,383 - MMJJ_RS00750 0.23 -0.2 144,384 + MMJJ_RS00750 0.23 -1.4 144,387 + +2.0 144,405 + MMJJ_RS00750 0.26 +0.0 144,405 + MMJJ_RS00750 0.26 -1.5 144,405 + MMJJ_RS00750 0.26 -0.0 144,407 - MMJJ_RS00750 0.26 +0.7 144,431 - MMJJ_RS00750 0.29 -0.3 144,442 - MMJJ_RS00750 0.31 +0.1 144,443 + MMJJ_RS00750 0.31 +2.3 144,447 + MMJJ_RS00750 0.32 +0.5 144,467 - MMJJ_RS00750 0.34 -1.3 144,468 + MMJJ_RS00750 0.34 +0.4 144,481 + MMJJ_RS00750 0.36 +1.6 144,481 + MMJJ_RS00750 0.36 +0.2 144,482 - MMJJ_RS00750 0.36 -0.0 144,482 - MMJJ_RS00750 0.36 +1.0 144,482 - MMJJ_RS00750 0.36 +1.2 144,482 - MMJJ_RS00750 0.36 -1.9 144,483 + MMJJ_RS00750 0.36 +0.2 144,483 + MMJJ_RS00750 0.36 +0.8 144,493 - MMJJ_RS00750 0.38 +0.8 144,513 + MMJJ_RS00750 0.41 -0.4 144,770 - MMJJ_RS00750 0.76 -3.1 144,772 - MMJJ_RS00750 0.76 +0.1 144,831 + MMJJ_RS00750 0.84 -3.7 144,831 + MMJJ_RS00750 0.84 -1.6 144,845 - MMJJ_RS00750 0.86 -0.8 144,910 - -0.8 144,911 + -0.6 144,916 - -2.4 144,916 - +0.6 144,938 + +2.8 144,938 + -1.0 144,949 - +2.8 144,953 - -1.1 144,954 + -1.9 144,995 + +2.0 144,996 - +0.4 144,996 - -0.2 145,066 + MMJJ_RS00755 0.24 +0.1 145,074 + MMJJ_RS00755 0.28 +0.4 145,106 - MMJJ_RS00755 0.42 +1.6 145,137 - MMJJ_RS00755 0.55 -0.6 145,137 - MMJJ_RS00755 0.55 +0.5 145,138 + MMJJ_RS00755 0.56 -1.8 145,146 + MMJJ_RS00755 0.59 -0.6 145,164 - MMJJ_RS00755 0.67 +0.4 145,164 - MMJJ_RS00755 0.67 -2.2 145,164 - MMJJ_RS00755 0.67 +1.0 145,165 + MMJJ_RS00755 0.68 +0.9 145,182 + MMJJ_RS00755 0.75 +1.8 145,184 + MMJJ_RS00755 0.76 +1.0 145,187 - MMJJ_RS00755 0.77 +2.3 145,190 - MMJJ_RS00755 0.79 -2.4 145,190 - MMJJ_RS00755 0.79 -1.5 145,191 + MMJJ_RS00755 0.79 +1.2 145,191 + MMJJ_RS00755 0.79 +1.2 145,193 + MMJJ_RS00755 0.80 -1.9 145,193 + MMJJ_RS00755 0.80 +1.9 145,193 + MMJJ_RS00755 0.80 +1.9 145,230 + -0.4 145,240 - +0.7 145,240 - -0.2 145,240 - -2.7 145,240 - +1.0 145,240 - -2.0 145,240 - +0.5 145,240 - +2.0 145,241 + +0.1 145,241 + -0.0 145,241 + +1.6 145,241 + +2.2 145,241 + -0.4 145,241 + +2.9 145,241 + -0.5 145,242 - +0.6 145,243 + -3.1 145,264 - -0.1 145,265 + +0.5 145,268 - +0.2 145,268 - -0.3 145,269 + -0.6 145,269 + -0.2 145,271 + +3.7 145,271 + -0.4 145,271 + -2.6 145,277 - +0.7 145,286 - +0.6 145,330 + +1.1 145,332 - -1.4 145,333 + -1.4 145,402 - MMJJ_RS00760 0.16 +1.0 145,402 - MMJJ_RS00760 0.16 -1.1 145,403 + MMJJ_RS00760 0.17 +0.3 145,407 + MMJJ_RS00760 0.18 -0.7 145,407 + MMJJ_RS00760 0.18 +2.0 145,407 + MMJJ_RS00760 0.18 +1.2 145,407 + MMJJ_RS00760 0.18 -0.2 145,407 + MMJJ_RS00760 0.18 -0.5 145,408 - MMJJ_RS00760 0.18 +0.5 145,409 + MMJJ_RS00760 0.18 +3.7 145,417 - MMJJ_RS00760 0.20 +2.1 145,417 - MMJJ_RS00760 0.20 -2.3 145,431 - MMJJ_RS00760 0.24 +0.5 145,432 + MMJJ_RS00760 0.24 -1.0 145,432 + MMJJ_RS00760 0.24 -1.2 145,432 + MMJJ_RS00760 0.24 -0.5 145,433 - MMJJ_RS00760 0.24 +0.6 145,433 - MMJJ_RS00760 0.24 -1.5 145,484 - MMJJ_RS00760 0.37 -1.1 145,523 - MMJJ_RS00760 0.47 -0.2 145,524 + MMJJ_RS00760 0.47 +1.1 145,561 - MMJJ_RS00760 0.56 +1.1 145,602 + MMJJ_RS00760 0.66 +1.2 145,618 - MMJJ_RS00760 0.70 -0.1 145,637 - MMJJ_RS00760 0.75 -1.0 145,637 - MMJJ_RS00760 0.75 +1.1 145,637 - MMJJ_RS00760 0.75 -1.6 145,637 - MMJJ_RS00760 0.75 +1.8 145,638 + MMJJ_RS00760 0.75 -0.2 145,647 + MMJJ_RS00760 0.78 -0.4 145,684 - MMJJ_RS00760 0.87 +1.8 145,685 + MMJJ_RS00760 0.87 -0.9 145,688 - MMJJ_RS00760 0.88 +0.1 145,688 - MMJJ_RS00760 0.88 -1.6 145,688 - MMJJ_RS00760 0.88 -1.7 145,689 + MMJJ_RS00760 0.88 -2.3 145,689 + MMJJ_RS00760 0.88 -2.0 145,689 + MMJJ_RS00760 0.88 -1.4 145,690 - MMJJ_RS00760 0.88 -1.9 145,690 - MMJJ_RS00760 0.88 -3.2 145,690 - MMJJ_RS00760 0.88 -2.8 145,690 - MMJJ_RS00760 0.88 +3.3 145,691 + MMJJ_RS00760 0.89 -1.0 145,691 + MMJJ_RS00760 0.89 -1.0 145,691 + MMJJ_RS00760 0.89 -0.7 145,691 + MMJJ_RS00760 0.89 -0.2 145,729 + +2.1 145,729 + -2.9 145,754 - +1.8 145,755 + -1.6 145,757 + -0.6 145,760 - +1.5 145,766 - -2.7 145,769 + -0.7 145,769 + +1.2 145,772 + -0.3 145,798 - -0.1 145,856 - +0.7 145,872 + -1.1 145,909 + MMJJ_RS00765 0.13 -1.4 145,930 - MMJJ_RS00765 0.16 +1.8 145,931 + MMJJ_RS00765 0.16 -0.8 145,973 - MMJJ_RS00765 0.21 +0.6 145,974 + MMJJ_RS00765 0.21 -0.6 146,059 - MMJJ_RS00765 0.31 +2.9 146,059 - MMJJ_RS00765 0.31 +0.5 146,059 - MMJJ_RS00765 0.31 -1.6 146,059 - MMJJ_RS00765 0.31 -2.9 146,064 - MMJJ_RS00765 0.32 -1.8 146,064 - MMJJ_RS00765 0.32 -0.4 146,065 + MMJJ_RS00765 0.32 -0.3 146,070 - MMJJ_RS00765 0.33 +0.2 146,070 - MMJJ_RS00765 0.33 -2.0 146,079 + MMJJ_RS00765 0.34 +2.0 146,153 + MMJJ_RS00765 0.42 -1.6 146,169 - MMJJ_RS00765 0.44 -0.4 146,170 + MMJJ_RS00765 0.44 -0.5 146,171 - MMJJ_RS00765 0.44 +0.4 146,171 - MMJJ_RS00765 0.44 +1.0 146,171 - MMJJ_RS00765 0.44 -2.7 146,171 - MMJJ_RS00765 0.44 +1.8 146,171 - MMJJ_RS00765 0.44 -2.0 146,171 - MMJJ_RS00765 0.44 +2.0 146,171 - MMJJ_RS00765 0.44 +0.4 146,172 + MMJJ_RS00765 0.45 -1.7 146,172 + MMJJ_RS00765 0.45 -1.2 146,172 + MMJJ_RS00765 0.45 +1.9 146,172 + MMJJ_RS00765 0.45 +2.1 146,172 + MMJJ_RS00765 0.45 -1.4 146,172 + MMJJ_RS00765 0.45 -0.4 146,172 + MMJJ_RS00765 0.45 +0.9 146,172 + MMJJ_RS00765 0.45 -0.6 146,172 + MMJJ_RS00765 0.45 +2.7 146,173 - MMJJ_RS00765 0.45 +0.4 146,174 + MMJJ_RS00765 0.45 +1.3 146,182 + MMJJ_RS00765 0.46 -1.4 146,206 - MMJJ_RS00765 0.49 -1.7 146,206 - MMJJ_RS00765 0.49 -0.5 146,207 + MMJJ_RS00765 0.49 +2.0 146,237 - MMJJ_RS00765 0.52 +1.3
Or see this region's nucleotide sequence