Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09205

Experiment: McCas_formate_complete deta nonoate 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete deta nonoate 0.025 mM
1,707,782	-		MMJJ_RS09200	0.36	+0.5
1,707,782	-		MMJJ_RS09200	0.36	-1.7
1,707,783	+		MMJJ_RS09200	0.36	+2.0
1,707,783	+		MMJJ_RS09200	0.36	+2.0
1,707,787	+		MMJJ_RS09200	0.37	+0.4
1,707,819	+		MMJJ_RS09200	0.39	+1.4
1,707,890	+		MMJJ_RS09200	0.45	+0.4
1,707,890	+		MMJJ_RS09200	0.45	-0.5
1,707,922	-		MMJJ_RS09200	0.48	+1.4
1,707,923	+		MMJJ_RS09200	0.48	+1.2
1,707,952	-		MMJJ_RS09200	0.50	-0.8
1,707,955	-		MMJJ_RS09200	0.50	-1.0
1,707,955	-		MMJJ_RS09200	0.50	+1.0
1,707,955	-		MMJJ_RS09200	0.50	+0.8
1,707,956	+		MMJJ_RS09200	0.50	+0.2
1,707,956	+		MMJJ_RS09200	0.50	-0.5
1,707,959	-		MMJJ_RS09200	0.51	-1.9
1,707,959	-		MMJJ_RS09200	0.51	+0.7
1,707,959	-		MMJJ_RS09200	0.51	+1.5
1,707,959	-		MMJJ_RS09200	0.51	+0.3
1,707,959	-		MMJJ_RS09200	0.51	+3.0
1,707,959	-		MMJJ_RS09200	0.51	+0.9
1,707,960	+		MMJJ_RS09200	0.51	+1.2
1,707,960	+		MMJJ_RS09200	0.51	-1.5
1,707,960	+		MMJJ_RS09200	0.51	+0.1
1,707,962	-		MMJJ_RS09200	0.51	-3.9
1,707,962	-		MMJJ_RS09200	0.51	+0.2
1,707,983	-		MMJJ_RS09200	0.53	+1.1
1,708,031	-		MMJJ_RS09200	0.57	-1.6
1,708,079	+		MMJJ_RS09200	0.61	+0.7
1,708,111	+		MMJJ_RS09200	0.63	+1.5
1,708,123	-		MMJJ_RS09200	0.64	+0.7
1,708,275	+		MMJJ_RS09200	0.77	+1.3
1,708,281	-		MMJJ_RS09200	0.77	-0.1
1,708,296	-		MMJJ_RS09200	0.78	-0.5
1,708,299	-		MMJJ_RS09200	0.79	+0.9
1,708,326	-		MMJJ_RS09200	0.81	-0.0
1,708,327	+		MMJJ_RS09200	0.81	-0.3
1,708,335	-		MMJJ_RS09200	0.81	+0.1
1,708,336	+		MMJJ_RS09200	0.82	+1.6
1,708,336	+		MMJJ_RS09200	0.82	+1.4
1,708,483	-				+0.9
1,708,483	-				-0.9
1,708,484	+				+0.6
1,708,524	-				-0.8
1,708,525	+				-0.9
1,708,607	-				+1.2
1,708,632	+				+2.1
1,708,635	-				-1.3
1,708,636	+				-1.9
1,708,636	+				-0.1
1,708,636	+				-2.5
1,708,639	-				-0.3
1,708,640	+				-1.1
1,708,640	+				-2.1
1,708,675	+				-0.2
1,708,690	-				+0.4
1,708,691	+				-0.5
1,708,694	-				+0.4
1,708,695	+				+1.1
1,708,697	+				+2.2
1,708,708	-				+0.6
1,708,716	-				-1.3
1,708,716	-				+1.1
1,708,716	-				+1.7
1,708,716	-				+1.0
1,708,717	+				+0.6
1,708,718	-				+1.2
1,708,718	-				+1.3
1,708,718	-				+0.5
1,708,718	-				+0.4
1,708,718	-				+3.0
1,708,718	-				-0.5
1,708,719	+				+1.3
1,708,719	+				+1.0
1,708,719	+				+0.1
1,708,719	+				-0.2
1,708,719	+				+0.1
1,708,719	+				+0.3
1,708,720	-				-0.8
1,708,720	-				+3.1
1,708,721	+				+0.1
1,708,721	+				+1.3
1,708,724	+				-0.9
1,708,724	+				+1.8
1,708,725	-				+2.1
1,708,725	-				-2.3
1,708,740	-				-1.5
1,708,740	-				+0.7
1,708,740	-				+0.9
1,708,761	-				-1.9
1,708,762	+				+0.2
1,708,778	-				+1.0
1,708,780	-				-0.4
1,708,780	-				-0.0
1,708,780	-				-1.9
1,708,780	-				+1.4
1,708,781	+				+0.5
1,708,781	+				-1.9
1,708,781	+				-1.7
1,708,785	-				+0.7
1,708,786	+				+0.9
1,708,786	+				-1.3
1,708,805	+		MMJJ_RS09205	0.13	+1.6
1,708,805	+		MMJJ_RS09205	0.13	+1.1
1,708,816	+		MMJJ_RS09205	0.17	+0.2
1,708,820	+		MMJJ_RS09205	0.19	+0.7
1,708,867	-		MMJJ_RS09205	0.38	+1.0
1,708,921	-		MMJJ_RS09205	0.59	+0.7
1,708,921	-		MMJJ_RS09205	0.59	+0.4
1,708,976	-		MMJJ_RS09205	0.82	+0.8
1,708,976	-		MMJJ_RS09205	0.82	-2.9
1,709,063	+				-3.1
1,709,063	+				-0.3
1,709,063	+				-0.4
1,709,063	+				-1.3
1,709,098	-		MMJJ_RS09210	0.14	-1.7
1,709,099	+		MMJJ_RS09210	0.14	-0.6
1,709,099	+		MMJJ_RS09210	0.14	+0.8
1,709,099	+		MMJJ_RS09210	0.14	-0.5
1,709,099	+		MMJJ_RS09210	0.14	+0.4
1,709,102	-		MMJJ_RS09210	0.14	-0.3
1,709,103	+		MMJJ_RS09210	0.14	+0.0
1,709,103	+		MMJJ_RS09210	0.14	+2.1
1,709,110	+		MMJJ_RS09210	0.16	-1.8
1,709,117	-		MMJJ_RS09210	0.17	+1.2
1,709,117	-		MMJJ_RS09210	0.17	-0.1
1,709,117	-		MMJJ_RS09210	0.17	+1.0
1,709,118	+		MMJJ_RS09210	0.17	+0.2
1,709,131	+		MMJJ_RS09210	0.19	-0.1
1,709,203	+		MMJJ_RS09210	0.31	-0.9
1,709,211	-		MMJJ_RS09210	0.33	+1.1
1,709,245	+		MMJJ_RS09210	0.39	+0.9
1,709,263	+		MMJJ_RS09210	0.42	-1.9
1,709,279	-		MMJJ_RS09210	0.44	-0.2
1,709,342	-		MMJJ_RS09210	0.55	+0.7
1,709,398	+		MMJJ_RS09210	0.65	+0.5
1,709,443	-		MMJJ_RS09210	0.72	-0.2
1,709,452	-		MMJJ_RS09210	0.74	+0.7
1,709,453	+		MMJJ_RS09210	0.74	+1.6
1,709,520	-		MMJJ_RS09210	0.85	+0.7
1,709,538	-		MMJJ_RS09210	0.88	+0.7
1,709,538	-		MMJJ_RS09210	0.88	+0.4
1,709,538	-		MMJJ_RS09210	0.88	+3.3
1,709,585	+				+0.6
1,709,585	+				-1.3
1,709,585	+				+0.7
1,709,589	-				+1.2
1,709,590	+				-0.3
1,709,604	+				+0.7
1,709,629	-				+0.6
1,709,630	+				+0.7
1,709,656	-				+3.5
1,709,656	-				-0.2
1,709,658	-				+1.0
1,709,658	-				-0.7
1,709,658	-				+2.3
1,709,658	-				+1.2
1,709,659	+				-2.5
1,709,659	+				-1.8
1,709,662	+				-1.3
1,709,735	+				-2.8
1,709,736	-				-0.5
1,709,736	-				+0.1
1,709,736	-				-1.3
1,709,736	-				-0.6
1,709,737	+				-1.9
1,709,740	+				-0.0
1,709,740	+				-2.0
1,709,754	-				+1.0
1,709,754	-				+0.8
1,709,754	-				+0.9
1,709,755	+				+0.9
1,709,758	-				-1.3
1,709,759	+				+1.1
1,709,768	-				-0.0
1,709,792	-				+0.3
1,709,792	-				+1.0
1,709,792	-				-0.0
1,709,792	-				+2.1
1,709,792	-				+0.6
1,709,793	+				+1.0
1,709,793	+				-0.3
1,709,793	+				+0.2
1,709,794	-				+0.2
1,709,794	-				+2.2
1,709,795	+				+1.7
1,709,795	+				+2.1
1,709,795	+				+0.6
1,709,799	-				+0.3
1,709,799	-				+1.0
1,709,799	-				-0.3
1,709,800	+				-0.0
1,709,806	-				-1.7
1,709,807	+				-1.6
1,709,807	+				-3.7
1,709,810	+				-2.7
1,709,831	-		MMJJ_RS09215	0.12	-1.3
1,709,831	-		MMJJ_RS09215	0.12	+0.5
1,709,832	+		MMJJ_RS09215	0.13	+2.8
1,709,832	+		MMJJ_RS09215	0.13	+0.4
1,709,833	-		MMJJ_RS09215	0.13	-0.3
1,709,834	+		MMJJ_RS09215	0.13	+0.9
1,709,834	+		MMJJ_RS09215	0.13	-0.3
1,709,836	-		MMJJ_RS09215	0.13	+0.2
1,709,837	+		MMJJ_RS09215	0.13	-2.0
1,709,837	+		MMJJ_RS09215	0.13	+0.5
1,709,839	-		MMJJ_RS09215	0.13	+0.2
1,709,839	-		MMJJ_RS09215	0.13	+0.8
1,709,839	-		MMJJ_RS09215	0.13	+0.5
1,709,845	-		MMJJ_RS09215	0.14	-1.7
1,709,854	-		MMJJ_RS09215	0.15	-0.3
1,709,865	+		MMJJ_RS09215	0.17	-1.9
1,709,879	+		MMJJ_RS09215	0.19	-1.6
1,709,883	-		MMJJ_RS09215	0.19	+1.6
1,709,884	+		MMJJ_RS09215	0.19	+0.8
1,709,884	+		MMJJ_RS09215	0.19	-1.0
1,709,957	-		MMJJ_RS09215	0.29	+0.5
1,709,958	+		MMJJ_RS09215	0.29	+0.7
1,709,958	+		MMJJ_RS09215	0.29	+1.8
1,709,958	+		MMJJ_RS09215	0.29	-2.6
1,709,958	+		MMJJ_RS09215	0.29	+0.6
1,709,990	-		MMJJ_RS09215	0.34	-2.7
1,709,991	+		MMJJ_RS09215	0.34	-1.1
1,709,991	+		MMJJ_RS09215	0.34	+1.4
1,709,997	+		MMJJ_RS09215	0.35	+2.2
1,710,002	-		MMJJ_RS09215	0.35	+2.2
1,710,003	+		MMJJ_RS09215	0.35	-1.2
1,710,003	+		MMJJ_RS09215	0.35	+2.7
1,710,003	+		MMJJ_RS09215	0.35	-1.1
1,710,013	-		MMJJ_RS09215	0.37	+3.0
1,710,016	-		MMJJ_RS09215	0.37	+0.5
1,710,017	+		MMJJ_RS09215	0.37	-0.3