Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08415

Experiment: McCas_formate_complete deta nonoate 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete deta nonoate 0.025 mM
1,547,424	-		MMJJ_RS08405	0.69	-0.9
1,547,424	-		MMJJ_RS08405	0.69	+1.3
1,547,425	+		MMJJ_RS08405	0.69	-0.9
1,547,453	+		MMJJ_RS08405	0.72	-0.9
1,547,474	+		MMJJ_RS08405	0.74	+2.9
1,547,661	+				-3.0
1,547,665	-				-0.4
1,547,666	+				-2.3
1,547,680	-				-1.0
1,547,681	+				-1.5
1,547,681	+				-0.6
1,547,681	+				-1.3
1,547,695	-				+2.0
1,547,695	-				+0.5
1,547,698	-				+3.0
1,547,723	-				-1.2
1,547,724	+				-0.7
1,547,724	+				+0.2
1,547,724	+				+0.1
1,547,729	-				-0.6
1,547,729	-				-0.5
1,547,730	+				-2.9
1,547,735	-				-0.9
1,547,736	+				+1.2
1,547,736	+				-0.9
1,547,762	-				-1.1
1,547,763	+				-0.0
1,547,763	+				+1.4
1,547,769	-				+1.3
1,547,785	-				+0.5
1,547,785	-				+0.5
1,547,785	-				+0.5
1,547,786	+				-0.7
1,547,786	+				+0.3
1,547,786	+				+1.1
1,547,786	+				+0.8
1,547,786	+				-0.1
1,547,786	+				-0.9
1,547,790	+				+2.0
1,547,790	+				+0.3
1,547,790	+				-0.7
1,547,790	+				+0.1
1,547,790	+				+0.5
1,547,792	+				-0.1
1,547,792	+				+0.3
1,547,792	+				-1.5
1,547,792	+				+0.3
1,547,792	+				-0.5
1,547,792	+				+0.3
1,547,792	+				-0.3
1,547,793	-				-1.9
1,547,793	-				-0.2
1,547,793	-				+1.1
1,547,793	-				+1.4
1,547,793	-				+0.8
1,547,793	-				+0.6
1,547,794	+				-0.2
1,547,794	+				-2.8
1,547,794	+				-0.3
1,547,794	+				-0.1
1,547,794	+				+0.4
1,547,796	-				+2.3
1,547,797	+				+0.7
1,547,831	+				-1.7
1,547,838	-				+0.4
1,547,839	+				+3.6
1,547,839	+				+0.1
1,547,898	-		MMJJ_RS08410	0.18	+0.9
1,547,899	+		MMJJ_RS08410	0.19	-1.0
1,548,008	+		MMJJ_RS08410	0.49	+0.8
1,548,070	+		MMJJ_RS08410	0.66	+1.5
1,548,081	-		MMJJ_RS08410	0.69	+0.9
1,548,096	-		MMJJ_RS08410	0.73	-1.3
1,548,211	-				-0.0
1,548,212	+				+0.1
1,548,243	-				+2.5
1,548,247	-				-0.9
1,548,247	-				+1.8
1,548,247	-				-0.5
1,548,247	-				-0.6
1,548,248	+				+1.3
1,548,273	-				-0.6
1,548,276	+				-0.6
1,548,305	-				-0.6
1,548,326	+				+0.9
1,548,328	+				+0.7
1,548,328	+				+0.5
1,548,340	-				+0.2
1,548,340	-				-0.9
1,548,341	+				-2.7
1,548,455	-		MMJJ_RS08415	0.14	-1.6
1,548,469	-		MMJJ_RS08415	0.16	+0.3
1,548,497	+		MMJJ_RS08415	0.20	-1.9
1,548,517	-		MMJJ_RS08415	0.23	-0.3
1,548,517	-		MMJJ_RS08415	0.23	-0.3
1,548,517	-		MMJJ_RS08415	0.23	-0.8
1,548,517	-		MMJJ_RS08415	0.23	+1.1
1,548,517	-		MMJJ_RS08415	0.23	-0.3
1,548,517	-		MMJJ_RS08415	0.23	+0.5
1,548,518	+		MMJJ_RS08415	0.23	-0.6
1,548,518	+		MMJJ_RS08415	0.23	+0.7
1,548,518	+		MMJJ_RS08415	0.23	-1.0
1,548,518	+		MMJJ_RS08415	0.23	-0.3
1,548,518	+		MMJJ_RS08415	0.23	-0.2
1,548,543	-		MMJJ_RS08415	0.27	+2.2
1,548,559	-		MMJJ_RS08415	0.30	-0.9
1,548,560	+		MMJJ_RS08415	0.30	-1.3
1,548,582	-		MMJJ_RS08415	0.33	+1.0
1,548,682	-		MMJJ_RS08415	0.49	-2.7
1,548,682	-		MMJJ_RS08415	0.49	-0.4
1,548,683	+		MMJJ_RS08415	0.49	+1.1
1,548,683	+		MMJJ_RS08415	0.49	+1.4
1,548,729	-		MMJJ_RS08415	0.56	+0.4
1,548,729	-		MMJJ_RS08415	0.56	-2.1
1,548,730	+		MMJJ_RS08415	0.56	+2.8
1,548,730	+		MMJJ_RS08415	0.56	-0.3
1,548,730	+		MMJJ_RS08415	0.56	-0.9
1,548,787	+		MMJJ_RS08415	0.65	+0.5
1,548,887	-		MMJJ_RS08415	0.81	+0.4
1,548,913	-		MMJJ_RS08415	0.85	-0.5
1,548,935	+		MMJJ_RS08415	0.88	-1.9
1,548,949	-				-1.1
1,548,951	-				+1.4
1,548,951	-				-1.3
1,548,951	-				+0.8
1,548,952	+				+1.4
1,548,953	-				+0.5
1,548,953	-				+1.0
1,548,954	+				+1.1
1,548,954	+				-0.4
1,548,956	+				-3.2
1,548,956	+				-2.5
1,548,956	+				-0.9
1,549,029	-				-1.3
1,549,031	-				-0.3
1,549,041	-				+0.2
1,549,080	+				+0.1
1,549,103	-				-0.8
1,549,104	+				-0.6
1,549,104	+				-2.0
1,549,104	+				-0.5
1,549,104	+				-0.6
1,549,107	-				+0.1
1,549,127	-		MMJJ_RS08420	0.11	-0.4
1,549,127	-		MMJJ_RS08420	0.11	+0.3
1,549,128	+		MMJJ_RS08420	0.11	+0.4
1,549,135	+		MMJJ_RS08420	0.12	+2.2
1,549,158	+		MMJJ_RS08420	0.14	-0.5
1,549,222	-		MMJJ_RS08420	0.20	+0.1
1,549,223	+		MMJJ_RS08420	0.20	+0.0
1,549,223	+		MMJJ_RS08420	0.20	-1.9
1,549,226	-		MMJJ_RS08420	0.20	-0.9
1,549,226	-		MMJJ_RS08420	0.20	+2.0
1,549,227	+		MMJJ_RS08420	0.20	-0.7
1,549,243	-		MMJJ_RS08420	0.22	+0.3
1,549,271	-		MMJJ_RS08420	0.24	-0.5
1,549,277	+		MMJJ_RS08420	0.25	-0.5
1,549,332	-		MMJJ_RS08420	0.30	+0.4
1,549,332	-		MMJJ_RS08420	0.30	+2.0
1,549,333	+		MMJJ_RS08420	0.30	-4.2
1,549,360	-		MMJJ_RS08420	0.33	-0.8
1,549,373	-		MMJJ_RS08420	0.34	-1.1
1,549,374	+		MMJJ_RS08420	0.34	-0.4
1,549,374	+		MMJJ_RS08420	0.34	+1.0
1,549,374	+		MMJJ_RS08420	0.34	+0.8
1,549,374	+		MMJJ_RS08420	0.34	+0.9
1,549,379	-		MMJJ_RS08420	0.35	+0.0
1,549,379	-		MMJJ_RS08420	0.35	-2.9
1,549,380	+		MMJJ_RS08420	0.35	+0.7
1,549,380	+		MMJJ_RS08420	0.35	-0.7
1,549,380	+		MMJJ_RS08420	0.35	-1.4
1,549,380	+		MMJJ_RS08420	0.35	+0.0
1,549,380	+		MMJJ_RS08420	0.35	-0.3
1,549,381	-		MMJJ_RS08420	0.35	+1.1
1,549,382	+		MMJJ_RS08420	0.35	+2.7
1,549,382	+		MMJJ_RS08420	0.35	+1.4
1,549,384	-		MMJJ_RS08420	0.35	+0.7
1,549,385	+		MMJJ_RS08420	0.35	-0.2
1,549,385	+		MMJJ_RS08420	0.35	-0.6
1,549,385	+		MMJJ_RS08420	0.35	+0.4
1,549,385	+		MMJJ_RS08420	0.35	-0.4
1,549,415	-		MMJJ_RS08420	0.38	+0.6
1,549,427	-		MMJJ_RS08420	0.39	-0.3
1,549,427	-		MMJJ_RS08420	0.39	-0.2
1,549,496	-		MMJJ_RS08420	0.46	+0.7
1,549,503	-		MMJJ_RS08420	0.46	+1.2
1,549,503	-		MMJJ_RS08420	0.46	-0.5
1,549,503	-		MMJJ_RS08420	0.46	+3.2
1,549,504	+		MMJJ_RS08420	0.46	+0.1
1,549,504	+		MMJJ_RS08420	0.46	+0.2
1,549,507	-		MMJJ_RS08420	0.47	+0.7
1,549,507	-		MMJJ_RS08420	0.47	+0.4
1,549,507	-		MMJJ_RS08420	0.47	+0.7
1,549,508	+		MMJJ_RS08420	0.47	-1.1
1,549,508	+		MMJJ_RS08420	0.47	-1.0
1,549,508	+		MMJJ_RS08420	0.47	-1.7
1,549,508	+		MMJJ_RS08420	0.47	-0.2
1,549,508	+		MMJJ_RS08420	0.47	+1.2
1,549,513	+		MMJJ_RS08420	0.47	+0.8
1,549,524	+		MMJJ_RS08420	0.48	-0.2
1,549,524	+		MMJJ_RS08420	0.48	+1.8
1,549,606	+		MMJJ_RS08420	0.56	+1.1
1,549,634	-		MMJJ_RS08420	0.59	-3.2
1,549,634	-		MMJJ_RS08420	0.59	+0.1
1,549,635	+		MMJJ_RS08420	0.59	-0.1
1,549,638	+		MMJJ_RS08420	0.59	+0.7
1,549,638	+		MMJJ_RS08420	0.59	-0.9
1,549,638	+		MMJJ_RS08420	0.59	+0.2
1,549,638	+		MMJJ_RS08420	0.59	-1.3
1,549,673	+		MMJJ_RS08420	0.62	+1.0
1,549,676	-		MMJJ_RS08420	0.63	+1.3
1,549,676	-		MMJJ_RS08420	0.63	-2.5
1,549,676	-		MMJJ_RS08420	0.63	-3.9
1,549,713	-		MMJJ_RS08420	0.66	+2.0
1,549,713	-		MMJJ_RS08420	0.66	+1.6
1,549,713	-		MMJJ_RS08420	0.66	-0.4
1,549,714	+		MMJJ_RS08420	0.66	+0.6
1,549,714	+		MMJJ_RS08420	0.66	-1.2
1,549,716	-		MMJJ_RS08420	0.66	-0.2
1,549,716	-		MMJJ_RS08420	0.66	-0.6
1,549,717	+		MMJJ_RS08420	0.67	+1.3
1,549,728	-		MMJJ_RS08420	0.68	-0.2
1,549,728	-		MMJJ_RS08420	0.68	+1.2
1,549,728	-		MMJJ_RS08420	0.68	+2.8
1,549,729	+		MMJJ_RS08420	0.68	-1.1
1,549,751	-		MMJJ_RS08420	0.70	-0.1
1,549,752	+		MMJJ_RS08420	0.70	-1.4
1,549,784	-		MMJJ_RS08420	0.73	-2.1
1,549,785	+		MMJJ_RS08420	0.73	-0.3
1,549,785	+		MMJJ_RS08420	0.73	-0.3
1,549,785	+		MMJJ_RS08420	0.73	-0.5
1,549,844	-		MMJJ_RS08420	0.79	+0.1
1,549,859	-		MMJJ_RS08420	0.80	+0.3
1,549,859	-		MMJJ_RS08420	0.80	-0.1
1,549,859	-		MMJJ_RS08420	0.80	+0.5
1,549,859	-		MMJJ_RS08420	0.80	-0.3
1,549,859	-		MMJJ_RS08420	0.80	+0.5
1,549,860	+		MMJJ_RS08420	0.80	+3.1
1,549,860	+		MMJJ_RS08420	0.80	-1.1
1,549,860	+		MMJJ_RS08420	0.80	+2.7
1,549,892	-		MMJJ_RS08420	0.83	+0.8
1,549,915	+		MMJJ_RS08420	0.85	-3.5
1,550,004	-				-1.7