Experiment: McCas_formate_complete deta nonoate 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05275 and MMJJ_RS05280 are separated by 629 nucleotides MMJJ_RS05280 and MMJJ_RS05285 are separated by 15 nucleotides
MMJJ_RS05275: MMJJ_RS05275 - helix-turn-helix domain-containing protein, at 975,747 to 976,268
_RS05275
MMJJ_RS05280: MMJJ_RS05280 - hypothetical protein, at 976,898 to 977,980
_RS05280
MMJJ_RS05285: MMJJ_RS05285 - minichromosome maintenance protein MCM, at 977,996 to 980,014
_RS05285
Position (kb) 976
977
978 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 976.089 kb on - strand, within MMJJ_RS05275 at 976.095 kb on + strand, within MMJJ_RS05275 at 976.237 kb on - strand at 976.262 kb on - strand at 976.283 kb on - strand at 976.285 kb on - strand at 976.292 kb on - strand at 976.292 kb on - strand at 976.292 kb on - strand at 976.292 kb on - strand at 976.293 kb on + strand at 976.293 kb on + strand at 976.293 kb on + strand at 976.293 kb on + strand at 976.293 kb on + strand at 976.296 kb on - strand at 976.296 kb on - strand at 976.297 kb on + strand at 976.300 kb on + strand at 976.306 kb on - strand at 976.307 kb on + strand at 976.320 kb on - strand at 976.413 kb on + strand at 976.416 kb on - strand at 976.458 kb on + strand at 976.480 kb on + strand at 976.482 kb on + strand at 976.513 kb on - strand at 976.562 kb on + strand at 976.572 kb on + strand at 976.592 kb on + strand at 976.671 kb on - strand at 976.723 kb on + strand at 976.740 kb on - strand at 976.740 kb on - strand at 976.740 kb on - strand at 976.740 kb on - strand at 976.741 kb on + strand at 976.741 kb on + strand at 976.742 kb on - strand at 976.742 kb on - strand at 976.742 kb on - strand at 976.748 kb on + strand at 976.768 kb on + strand at 976.775 kb on + strand at 976.776 kb on - strand at 976.777 kb on + strand at 976.784 kb on - strand at 976.792 kb on - strand at 976.792 kb on - strand at 976.792 kb on - strand at 976.793 kb on + strand at 976.833 kb on - strand at 976.861 kb on + strand at 976.881 kb on + strand at 976.949 kb on - strand at 976.950 kb on + strand at 976.950 kb on + strand at 976.951 kb on - strand at 976.951 kb on - strand at 976.979 kb on - strand at 976.979 kb on - strand at 976.980 kb on + strand at 976.980 kb on + strand at 976.980 kb on + strand at 977.010 kb on + strand, within MMJJ_RS05280 at 977.010 kb on + strand, within MMJJ_RS05280
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete deta nonoate 0.025 mM remove 976,089 - MMJJ_RS05275 0.66 -1.8 976,095 + MMJJ_RS05275 0.67 -0.2 976,237 - +1.3 976,262 - -2.5 976,283 - -0.4 976,285 - -1.0 976,292 - -0.1 976,292 - -1.5 976,292 - -1.2 976,292 - +0.7 976,293 + -0.5 976,293 + -0.4 976,293 + +1.6 976,293 + +0.2 976,293 + +2.4 976,296 - -2.0 976,296 - +0.5 976,297 + +0.6 976,300 + +0.1 976,306 - +2.1 976,307 + -4.3 976,320 - +2.0 976,413 + +0.8 976,416 - -1.2 976,458 + +1.8 976,480 + -2.3 976,482 + -2.2 976,513 - +0.0 976,562 + -0.2 976,572 + -2.5 976,592 + -0.0 976,671 - -2.3 976,723 + -1.8 976,740 - +2.1 976,740 - +3.0 976,740 - +1.3 976,740 - -0.9 976,741 + +0.6 976,741 + +0.4 976,742 - -0.9 976,742 - -0.4 976,742 - +1.0 976,748 + -1.1 976,768 + -1.0 976,775 + -0.0 976,776 - +0.4 976,777 + -1.6 976,784 - -1.5 976,792 - +0.4 976,792 - +1.2 976,792 - -0.3 976,793 + -1.4 976,833 - +0.2 976,861 + -0.0 976,881 + +1.1 976,949 - +0.2 976,950 + -2.6 976,950 + -3.6 976,951 - -1.2 976,951 - -0.8 976,979 - -0.4 976,979 - +0.0 976,980 + -4.1 976,980 + -1.1 976,980 + -0.7 977,010 + MMJJ_RS05280 0.10 -2.6 977,010 + MMJJ_RS05280 0.10 -2.5
Or see this region's nucleotide sequence