Experiment: McCas_formate_complete deta nonoate 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05240 and MMJJ_RS05245 are separated by 4 nucleotides MMJJ_RS05245 and MMJJ_RS05250 are separated by 26 nucleotides MMJJ_RS05250 and MMJJ_RS05255 are separated by 10 nucleotides MMJJ_RS05255 and MMJJ_RS05260 are separated by 3 nucleotides
MMJJ_RS05240: MMJJ_RS05240 - type II secretion system F family protein, at 968,722 to 969,780
_RS05240
MMJJ_RS05245: MMJJ_RS05245 - type II secretion system F family protein, at 969,785 to 970,681
_RS05245
MMJJ_RS05250: MMJJ_RS05250 - HDIG domain-containing protein, at 970,708 to 971,295
_RS05250
MMJJ_RS05255: MMJJ_RS05255 - transcription factor E, at 971,306 to 971,863
_RS05255
MMJJ_RS05260: MMJJ_RS05260 - ATP-grasp domain-containing protein, at 971,867 to 972,916
_RS05260
Position (kb) 970
971
972 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 969.726 kb on + strand at 969.745 kb on + strand at 969.745 kb on + strand at 969.804 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.813 kb on - strand at 969.814 kb on + strand at 969.814 kb on + strand at 969.814 kb on + strand at 969.815 kb on - strand at 969.816 kb on + strand at 969.838 kb on - strand at 969.842 kb on + strand at 969.905 kb on + strand, within MMJJ_RS05245 at 969.927 kb on - strand, within MMJJ_RS05245 at 969.958 kb on - strand, within MMJJ_RS05245 at 969.978 kb on - strand, within MMJJ_RS05245 at 969.979 kb on + strand, within MMJJ_RS05245 at 969.980 kb on - strand, within MMJJ_RS05245 at 970.012 kb on - strand, within MMJJ_RS05245 at 970.012 kb on - strand, within MMJJ_RS05245 at 970.016 kb on - strand, within MMJJ_RS05245 at 970.016 kb on - strand, within MMJJ_RS05245 at 970.017 kb on + strand, within MMJJ_RS05245 at 970.024 kb on - strand, within MMJJ_RS05245 at 970.054 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.064 kb on - strand, within MMJJ_RS05245 at 970.065 kb on + strand, within MMJJ_RS05245 at 970.065 kb on + strand, within MMJJ_RS05245 at 970.152 kb on - strand, within MMJJ_RS05245 at 970.153 kb on + strand, within MMJJ_RS05245 at 970.245 kb on - strand, within MMJJ_RS05245 at 970.246 kb on + strand, within MMJJ_RS05245 at 970.286 kb on - strand, within MMJJ_RS05245 at 970.287 kb on + strand, within MMJJ_RS05245 at 970.365 kb on - strand, within MMJJ_RS05245 at 970.366 kb on + strand, within MMJJ_RS05245 at 970.401 kb on - strand, within MMJJ_RS05245 at 970.401 kb on - strand, within MMJJ_RS05245 at 970.401 kb on - strand, within MMJJ_RS05245 at 970.402 kb on + strand, within MMJJ_RS05245 at 970.448 kb on - strand, within MMJJ_RS05245 at 970.449 kb on + strand, within MMJJ_RS05245 at 970.453 kb on + strand, within MMJJ_RS05245 at 970.462 kb on + strand, within MMJJ_RS05245 at 970.470 kb on - strand, within MMJJ_RS05245 at 970.471 kb on + strand, within MMJJ_RS05245 at 970.506 kb on - strand, within MMJJ_RS05245 at 970.546 kb on + strand, within MMJJ_RS05245 at 970.587 kb on - strand, within MMJJ_RS05245 at 970.591 kb on - strand, within MMJJ_RS05245 at 970.592 kb on + strand at 970.600 kb on + strand at 970.603 kb on - strand at 970.603 kb on - strand at 970.604 kb on + strand at 970.604 kb on + strand at 970.604 kb on + strand at 970.614 kb on - strand at 970.618 kb on - strand at 970.618 kb on - strand at 970.618 kb on - strand at 970.714 kb on + strand at 970.714 kb on + strand at 970.725 kb on - strand at 970.726 kb on + strand at 970.726 kb on + strand at 970.726 kb on + strand at 970.726 kb on + strand at 970.730 kb on + strand at 970.739 kb on - strand at 970.739 kb on - strand at 970.748 kb on - strand at 970.749 kb on + strand at 970.749 kb on + strand at 970.791 kb on - strand, within MMJJ_RS05250 at 970.834 kb on - strand, within MMJJ_RS05250 at 970.852 kb on - strand, within MMJJ_RS05250 at 970.853 kb on + strand, within MMJJ_RS05250 at 970.855 kb on - strand, within MMJJ_RS05250 at 970.884 kb on + strand, within MMJJ_RS05250 at 970.993 kb on - strand, within MMJJ_RS05250 at 970.994 kb on + strand, within MMJJ_RS05250 at 971.020 kb on - strand, within MMJJ_RS05250 at 971.021 kb on + strand, within MMJJ_RS05250 at 971.021 kb on + strand, within MMJJ_RS05250 at 971.021 kb on + strand, within MMJJ_RS05250 at 971.021 kb on + strand, within MMJJ_RS05250 at 971.021 kb on + strand, within MMJJ_RS05250 at 971.034 kb on - strand, within MMJJ_RS05250 at 971.034 kb on - strand, within MMJJ_RS05250 at 971.035 kb on + strand, within MMJJ_RS05250 at 971.100 kb on - strand, within MMJJ_RS05250 at 971.155 kb on - strand, within MMJJ_RS05250 at 971.211 kb on - strand, within MMJJ_RS05250 at 971.212 kb on + strand, within MMJJ_RS05250 at 971.216 kb on + strand, within MMJJ_RS05250 at 971.254 kb on - strand at 971.254 kb on - strand at 971.254 kb on - strand at 971.255 kb on + strand at 971.255 kb on + strand at 971.259 kb on - strand at 971.290 kb on + strand at 971.296 kb on + strand at 971.310 kb on - strand at 971.311 kb on + strand at 971.311 kb on + strand at 971.333 kb on + strand at 971.336 kb on + strand at 971.357 kb on + strand at 971.741 kb on + strand, within MMJJ_RS05255 at 971.749 kb on - strand, within MMJJ_RS05255 at 972.182 kb on - strand, within MMJJ_RS05260
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete deta nonoate 0.025 mM remove 969,726 + -2.4 969,745 + +0.4 969,745 + -3.9 969,804 - -2.9 969,813 - -0.8 969,813 - -0.7 969,813 - +2.2 969,813 - +1.4 969,813 - +1.5 969,813 - -0.4 969,813 - +0.8 969,813 - -0.0 969,813 - -2.3 969,814 + -0.3 969,814 + -0.3 969,814 + -0.8 969,815 - +0.6 969,816 + +0.3 969,838 - +1.1 969,842 + -2.2 969,905 + MMJJ_RS05245 0.13 +0.6 969,927 - MMJJ_RS05245 0.16 +0.5 969,958 - MMJJ_RS05245 0.19 +1.1 969,978 - MMJJ_RS05245 0.22 -2.0 969,979 + MMJJ_RS05245 0.22 +0.5 969,980 - MMJJ_RS05245 0.22 +1.1 970,012 - MMJJ_RS05245 0.25 +0.5 970,012 - MMJJ_RS05245 0.25 -0.1 970,016 - MMJJ_RS05245 0.26 +0.6 970,016 - MMJJ_RS05245 0.26 -0.2 970,017 + MMJJ_RS05245 0.26 -2.0 970,024 - MMJJ_RS05245 0.27 -1.6 970,054 - MMJJ_RS05245 0.30 -0.8 970,064 - MMJJ_RS05245 0.31 +2.0 970,064 - MMJJ_RS05245 0.31 +2.5 970,064 - MMJJ_RS05245 0.31 -2.9 970,064 - MMJJ_RS05245 0.31 +0.6 970,064 - MMJJ_RS05245 0.31 -0.2 970,064 - MMJJ_RS05245 0.31 +0.4 970,064 - MMJJ_RS05245 0.31 -1.0 970,064 - MMJJ_RS05245 0.31 -0.8 970,064 - MMJJ_RS05245 0.31 +0.1 970,064 - MMJJ_RS05245 0.31 +0.3 970,065 + MMJJ_RS05245 0.31 +0.9 970,065 + MMJJ_RS05245 0.31 +0.6 970,152 - MMJJ_RS05245 0.41 -0.2 970,153 + MMJJ_RS05245 0.41 +0.4 970,245 - MMJJ_RS05245 0.51 -0.0 970,246 + MMJJ_RS05245 0.51 +0.3 970,286 - MMJJ_RS05245 0.56 +0.4 970,287 + MMJJ_RS05245 0.56 +3.8 970,365 - MMJJ_RS05245 0.65 +1.1 970,366 + MMJJ_RS05245 0.65 -2.5 970,401 - MMJJ_RS05245 0.69 +0.4 970,401 - MMJJ_RS05245 0.69 +0.9 970,401 - MMJJ_RS05245 0.69 -0.4 970,402 + MMJJ_RS05245 0.69 -0.6 970,448 - MMJJ_RS05245 0.74 -0.8 970,449 + MMJJ_RS05245 0.74 -0.1 970,453 + MMJJ_RS05245 0.74 +0.8 970,462 + MMJJ_RS05245 0.75 +1.0 970,470 - MMJJ_RS05245 0.76 -1.6 970,471 + MMJJ_RS05245 0.76 -0.6 970,506 - MMJJ_RS05245 0.80 +1.1 970,546 + MMJJ_RS05245 0.85 +2.5 970,587 - MMJJ_RS05245 0.89 +0.2 970,591 - MMJJ_RS05245 0.90 +0.1 970,592 + -2.0 970,600 + +1.7 970,603 - -0.0 970,603 - +0.3 970,604 + -0.2 970,604 + +1.1 970,604 + -0.3 970,614 - +1.1 970,618 - +0.8 970,618 - +1.6 970,618 - +1.5 970,714 + +1.0 970,714 + +3.3 970,725 - -1.0 970,726 + -0.2 970,726 + -1.8 970,726 + -3.6 970,726 + +2.4 970,730 + +2.8 970,739 - -0.1 970,739 - +1.8 970,748 - -2.0 970,749 + +0.5 970,749 + +1.5 970,791 - MMJJ_RS05250 0.14 +0.9 970,834 - MMJJ_RS05250 0.21 +0.9 970,852 - MMJJ_RS05250 0.24 +0.8 970,853 + MMJJ_RS05250 0.25 -0.2 970,855 - MMJJ_RS05250 0.25 -1.3 970,884 + MMJJ_RS05250 0.30 +0.5 970,993 - MMJJ_RS05250 0.48 +0.8 970,994 + MMJJ_RS05250 0.49 +0.1 971,020 - MMJJ_RS05250 0.53 -0.1 971,021 + MMJJ_RS05250 0.53 +0.4 971,021 + MMJJ_RS05250 0.53 +0.4 971,021 + MMJJ_RS05250 0.53 +3.1 971,021 + MMJJ_RS05250 0.53 +4.0 971,021 + MMJJ_RS05250 0.53 +0.7 971,034 - MMJJ_RS05250 0.55 -0.8 971,034 - MMJJ_RS05250 0.55 +3.0 971,035 + MMJJ_RS05250 0.56 +0.2 971,100 - MMJJ_RS05250 0.67 +3.0 971,155 - MMJJ_RS05250 0.76 -0.3 971,211 - MMJJ_RS05250 0.86 +0.8 971,212 + MMJJ_RS05250 0.86 +0.8 971,216 + MMJJ_RS05250 0.86 +1.5 971,254 - +1.0 971,254 - +0.7 971,254 - +0.3 971,255 + -0.3 971,255 + +0.3 971,259 - -3.2 971,290 + +2.2 971,296 + +0.7 971,310 - +2.1 971,311 + -0.9 971,311 + +0.3 971,333 + +0.0 971,336 + -3.8 971,357 + -3.6 971,741 + MMJJ_RS05255 0.78 -0.5 971,749 - MMJJ_RS05255 0.79 -1.5 972,182 - MMJJ_RS05260 0.30 +0.8
Or see this region's nucleotide sequence