Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02060

Experiment: McCas_formate_complete deta nonoate 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02055 and MMJJ_RS02060 are separated by 8 nucleotidesMMJJ_RS02060 and MMJJ_RS02065 are separated by 73 nucleotides MMJJ_RS02055: MMJJ_RS02055 - GTP 3',8-cyclase MoaA, at 391,292 to 392,185 _RS02055 MMJJ_RS02060: MMJJ_RS02060 - cupin domain-containing protein, at 392,194 to 392,694 _RS02060 MMJJ_RS02065: MMJJ_RS02065 - S-layer protein, at 392,768 to 394,354 _RS02065 Position (kb) 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 391.251 kb on + strandat 391.287 kb on - strandat 391.346 kb on + strandat 391.527 kb on + strand, within MMJJ_RS02055at 391.527 kb on + strand, within MMJJ_RS02055at 391.527 kb on + strand, within MMJJ_RS02055at 391.527 kb on + strand, within MMJJ_RS02055at 391.546 kb on + strandat 391.564 kb on - strand, within MMJJ_RS02055at 391.578 kb on - strand, within MMJJ_RS02055at 391.589 kb on - strand, within MMJJ_RS02055at 391.590 kb on + strand, within MMJJ_RS02055at 391.638 kb on - strand, within MMJJ_RS02055at 391.642 kb on - strand, within MMJJ_RS02055at 391.643 kb on + strand, within MMJJ_RS02055at 391.728 kb on - strand, within MMJJ_RS02055at 391.735 kb on + strand, within MMJJ_RS02055at 391.735 kb on + strand, within MMJJ_RS02055at 391.844 kb on + strand, within MMJJ_RS02055at 391.863 kb on - strand, within MMJJ_RS02055at 391.863 kb on - strand, within MMJJ_RS02055at 391.878 kb on - strand, within MMJJ_RS02055at 391.879 kb on + strand, within MMJJ_RS02055at 391.879 kb on + strand, within MMJJ_RS02055at 391.926 kb on - strand, within MMJJ_RS02055at 391.927 kb on + strand, within MMJJ_RS02055at 391.927 kb on + strand, within MMJJ_RS02055at 391.927 kb on + strand, within MMJJ_RS02055at 391.930 kb on - strand, within MMJJ_RS02055at 391.961 kb on - strand, within MMJJ_RS02055at 391.978 kb on + strand, within MMJJ_RS02055at 392.037 kb on - strand, within MMJJ_RS02055at 392.045 kb on + strand, within MMJJ_RS02055at 392.045 kb on + strand, within MMJJ_RS02055at 392.045 kb on + strand, within MMJJ_RS02055at 392.057 kb on - strand, within MMJJ_RS02055at 392.061 kb on - strand, within MMJJ_RS02055at 392.061 kb on - strand, within MMJJ_RS02055at 392.086 kb on - strand, within MMJJ_RS02055at 392.128 kb on - strandat 392.129 kb on + strandat 392.129 kb on + strandat 392.192 kb on - strandat 392.209 kb on - strandat 392.217 kb on - strandat 392.254 kb on - strand, within MMJJ_RS02060at 392.255 kb on + strand, within MMJJ_RS02060at 392.270 kb on + strand, within MMJJ_RS02060at 392.270 kb on + strand, within MMJJ_RS02060at 392.303 kb on - strand, within MMJJ_RS02060at 392.315 kb on + strand, within MMJJ_RS02060at 392.315 kb on + strand, within MMJJ_RS02060at 392.316 kb on - strand, within MMJJ_RS02060at 392.317 kb on + strand, within MMJJ_RS02060at 392.317 kb on + strand, within MMJJ_RS02060at 392.338 kb on + strand, within MMJJ_RS02060at 392.347 kb on - strand, within MMJJ_RS02060at 392.358 kb on + strand, within MMJJ_RS02060at 392.413 kb on - strand, within MMJJ_RS02060at 392.416 kb on - strand, within MMJJ_RS02060at 392.432 kb on - strand, within MMJJ_RS02060at 392.433 kb on + strand, within MMJJ_RS02060at 392.436 kb on - strand, within MMJJ_RS02060at 392.436 kb on - strand, within MMJJ_RS02060at 392.442 kb on - strand, within MMJJ_RS02060at 392.443 kb on + strand, within MMJJ_RS02060at 392.443 kb on + strand, within MMJJ_RS02060at 392.464 kb on - strand, within MMJJ_RS02060at 392.464 kb on - strand, within MMJJ_RS02060at 392.466 kb on - strand, within MMJJ_RS02060at 392.466 kb on - strand, within MMJJ_RS02060at 392.466 kb on - strand, within MMJJ_RS02060at 392.467 kb on + strand, within MMJJ_RS02060at 392.467 kb on + strand, within MMJJ_RS02060at 392.487 kb on - strand, within MMJJ_RS02060at 392.487 kb on - strand, within MMJJ_RS02060at 392.516 kb on - strand, within MMJJ_RS02060at 392.516 kb on - strand, within MMJJ_RS02060at 392.708 kb on - strandat 392.708 kb on - strandat 392.709 kb on + strandat 392.712 kb on + strandat 392.717 kb on + strandat 392.717 kb on + strandat 392.717 kb on + strandat 392.737 kb on - strandat 392.738 kb on + strandat 392.738 kb on + strandat 392.738 kb on + strandat 392.739 kb on - strandat 392.739 kb on - strandat 392.742 kb on - strandat 392.743 kb on + strandat 392.743 kb on + strandat 392.767 kb on - strandat 392.767 kb on - strandat 392.768 kb on + strandat 392.797 kb on - strandat 392.797 kb on - strandat 392.797 kb on - strandat 392.812 kb on - strandat 392.817 kb on - strandat 392.817 kb on - strandat 392.817 kb on - strandat 392.817 kb on - strandat 392.820 kb on - strandat 392.880 kb on - strandat 392.881 kb on + strandat 392.892 kb on - strandat 392.896 kb on + strandat 392.918 kb on - strandat 392.925 kb on - strandat 393.028 kb on - strand, within MMJJ_RS02065at 393.088 kb on - strand, within MMJJ_RS02065at 393.191 kb on - strand, within MMJJ_RS02065at 393.246 kb on - strand, within MMJJ_RS02065at 393.264 kb on - strand, within MMJJ_RS02065at 393.264 kb on - strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.265 kb on + strand, within MMJJ_RS02065at 393.318 kb on - strand, within MMJJ_RS02065at 393.319 kb on + strand, within MMJJ_RS02065at 393.359 kb on - strand, within MMJJ_RS02065at 393.359 kb on - strand, within MMJJ_RS02065at 393.360 kb on + strand, within MMJJ_RS02065at 393.365 kb on + strand, within MMJJ_RS02065at 393.383 kb on - strand, within MMJJ_RS02065at 393.393 kb on - strand, within MMJJ_RS02065at 393.393 kb on - strand, within MMJJ_RS02065at 393.397 kb on + strand, within MMJJ_RS02065at 393.422 kb on + strand, within MMJJ_RS02065at 393.426 kb on - strand, within MMJJ_RS02065at 393.469 kb on - strand, within MMJJ_RS02065at 393.494 kb on + strand, within MMJJ_RS02065at 393.505 kb on - strand, within MMJJ_RS02065at 393.506 kb on + strand, within MMJJ_RS02065at 393.508 kb on - strand, within MMJJ_RS02065at 393.508 kb on - strand, within MMJJ_RS02065at 393.509 kb on + strand, within MMJJ_RS02065at 393.510 kb on - strand, within MMJJ_RS02065at 393.510 kb on - strand, within MMJJ_RS02065at 393.510 kb on - strand, within MMJJ_RS02065at 393.510 kb on - strand, within MMJJ_RS02065at 393.511 kb on + strand, within MMJJ_RS02065at 393.511 kb on + strand, within MMJJ_RS02065at 393.511 kb on + strand, within MMJJ_RS02065at 393.511 kb on - strand, within MMJJ_RS02065at 393.514 kb on + strand, within MMJJ_RS02065at 393.516 kb on + strand, within MMJJ_RS02065at 393.516 kb on + strand, within MMJJ_RS02065at 393.560 kb on - strand, within MMJJ_RS02065at 393.561 kb on + strand, within MMJJ_RS02065at 393.561 kb on + strand, within MMJJ_RS02065at 393.563 kb on + strandat 393.563 kb on + strand, within MMJJ_RS02065at 393.564 kb on - strand, within MMJJ_RS02065at 393.565 kb on + strand, within MMJJ_RS02065at 393.565 kb on + strand, within MMJJ_RS02065at 393.620 kb on - strand, within MMJJ_RS02065at 393.658 kb on + strand, within MMJJ_RS02065at 393.658 kb on + strand, within MMJJ_RS02065at 393.658 kb on + strand, within MMJJ_RS02065

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete deta nonoate 0.025 mM
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391,251 + +0.5
391,287 - +0.2
391,346 + +0.9
391,527 + MMJJ_RS02055 0.26 -0.9
391,527 + MMJJ_RS02055 0.26 +0.7
391,527 + MMJJ_RS02055 0.26 +0.3
391,527 + MMJJ_RS02055 0.26 -0.2
391,546 + +0.7
391,564 - MMJJ_RS02055 0.30 -0.9
391,578 - MMJJ_RS02055 0.32 -1.2
391,589 - MMJJ_RS02055 0.33 -0.9
391,590 + MMJJ_RS02055 0.33 -0.5
391,638 - MMJJ_RS02055 0.39 +0.1
391,642 - MMJJ_RS02055 0.39 -0.3
391,643 + MMJJ_RS02055 0.39 +0.4
391,728 - MMJJ_RS02055 0.49 +1.5
391,735 + MMJJ_RS02055 0.50 -1.0
391,735 + MMJJ_RS02055 0.50 -1.7
391,844 + MMJJ_RS02055 0.62 +0.3
391,863 - MMJJ_RS02055 0.64 +0.7
391,863 - MMJJ_RS02055 0.64 +0.5
391,878 - MMJJ_RS02055 0.66 -0.1
391,879 + MMJJ_RS02055 0.66 -0.7
391,879 + MMJJ_RS02055 0.66 -1.8
391,926 - MMJJ_RS02055 0.71 -1.1
391,927 + MMJJ_RS02055 0.71 -2.0
391,927 + MMJJ_RS02055 0.71 -0.8
391,927 + MMJJ_RS02055 0.71 +0.1
391,930 - MMJJ_RS02055 0.71 +1.4
391,961 - MMJJ_RS02055 0.75 -0.0
391,978 + MMJJ_RS02055 0.77 +0.7
392,037 - MMJJ_RS02055 0.83 +0.4
392,045 + MMJJ_RS02055 0.84 -0.6
392,045 + MMJJ_RS02055 0.84 +0.3
392,045 + MMJJ_RS02055 0.84 +0.8
392,057 - MMJJ_RS02055 0.86 -0.7
392,061 - MMJJ_RS02055 0.86 -1.0
392,061 - MMJJ_RS02055 0.86 -0.2
392,086 - MMJJ_RS02055 0.89 -1.4
392,128 - -3.3
392,129 + +1.2
392,129 + -2.1
392,192 - +0.7
392,209 - +0.8
392,217 - +0.8
392,254 - MMJJ_RS02060 0.12 -0.4
392,255 + MMJJ_RS02060 0.12 +0.7
392,270 + MMJJ_RS02060 0.15 +1.5
392,270 + MMJJ_RS02060 0.15 +0.5
392,303 - MMJJ_RS02060 0.22 +2.0
392,315 + MMJJ_RS02060 0.24 +1.5
392,315 + MMJJ_RS02060 0.24 +0.3
392,316 - MMJJ_RS02060 0.24 +0.6
392,317 + MMJJ_RS02060 0.25 -0.1
392,317 + MMJJ_RS02060 0.25 +0.2
392,338 + MMJJ_RS02060 0.29 +0.4
392,347 - MMJJ_RS02060 0.31 +0.3
392,358 + MMJJ_RS02060 0.33 +0.7
392,413 - MMJJ_RS02060 0.44 +2.7
392,416 - MMJJ_RS02060 0.44 +0.7
392,432 - MMJJ_RS02060 0.48 +1.1
392,433 + MMJJ_RS02060 0.48 -0.6
392,436 - MMJJ_RS02060 0.48 -0.3
392,436 - MMJJ_RS02060 0.48 +1.5
392,442 - MMJJ_RS02060 0.50 +3.0
392,443 + MMJJ_RS02060 0.50 -0.5
392,443 + MMJJ_RS02060 0.50 +0.3
392,464 - MMJJ_RS02060 0.54 +0.3
392,464 - MMJJ_RS02060 0.54 +0.9
392,466 - MMJJ_RS02060 0.54 -1.4
392,466 - MMJJ_RS02060 0.54 -0.9
392,466 - MMJJ_RS02060 0.54 +0.9
392,467 + MMJJ_RS02060 0.54 -0.3
392,467 + MMJJ_RS02060 0.54 -2.1
392,487 - MMJJ_RS02060 0.58 +0.2
392,487 - MMJJ_RS02060 0.58 +0.3
392,516 - MMJJ_RS02060 0.64 +0.9
392,516 - MMJJ_RS02060 0.64 -3.4
392,708 - +2.7
392,708 - -1.3
392,709 + -1.9
392,712 + -0.2
392,717 + +0.4
392,717 + -0.1
392,717 + +1.5
392,737 - +1.7
392,738 + +0.0
392,738 + -1.9
392,738 + +0.2
392,739 - +1.2
392,739 - +0.4
392,742 - -0.8
392,743 + -0.9
392,743 + -0.8
392,767 - +2.4
392,767 - +1.2
392,768 + +1.0
392,797 - -0.6
392,797 - +2.2
392,797 - -3.6
392,812 - +0.9
392,817 - +0.2
392,817 - +0.3
392,817 - +0.8
392,817 - +0.5
392,820 - -0.6
392,880 - +0.2
392,881 + +2.6
392,892 - -0.0
392,896 + -0.8
392,918 - +0.0
392,925 - +0.1
393,028 - MMJJ_RS02065 0.16 +1.4
393,088 - MMJJ_RS02065 0.20 +1.3
393,191 - MMJJ_RS02065 0.27 +1.0
393,246 - MMJJ_RS02065 0.30 -1.4
393,264 - MMJJ_RS02065 0.31 -0.0
393,264 - MMJJ_RS02065 0.31 -0.7
393,265 + MMJJ_RS02065 0.31 -0.9
393,265 + MMJJ_RS02065 0.31 -0.1
393,265 + MMJJ_RS02065 0.31 -0.9
393,265 + MMJJ_RS02065 0.31 -0.4
393,265 + MMJJ_RS02065 0.31 -0.4
393,265 + MMJJ_RS02065 0.31 -0.8
393,318 - MMJJ_RS02065 0.35 +0.8
393,319 + MMJJ_RS02065 0.35 +3.4
393,359 - MMJJ_RS02065 0.37 +0.5
393,359 - MMJJ_RS02065 0.37 -1.4
393,360 + MMJJ_RS02065 0.37 -3.1
393,365 + MMJJ_RS02065 0.38 -0.2
393,383 - MMJJ_RS02065 0.39 +1.3
393,393 - MMJJ_RS02065 0.39 +0.6
393,393 - MMJJ_RS02065 0.39 +0.6
393,397 + MMJJ_RS02065 0.40 -0.2
393,422 + MMJJ_RS02065 0.41 +0.9
393,426 - MMJJ_RS02065 0.41 -1.0
393,469 - MMJJ_RS02065 0.44 +1.0
393,494 + MMJJ_RS02065 0.46 +0.4
393,505 - MMJJ_RS02065 0.46 +0.4
393,506 + MMJJ_RS02065 0.47 +2.4
393,508 - MMJJ_RS02065 0.47 +0.3
393,508 - MMJJ_RS02065 0.47 +0.5
393,509 + MMJJ_RS02065 0.47 +3.2
393,510 - MMJJ_RS02065 0.47 -0.1
393,510 - MMJJ_RS02065 0.47 -3.0
393,510 - MMJJ_RS02065 0.47 -1.1
393,510 - MMJJ_RS02065 0.47 +0.4
393,511 + MMJJ_RS02065 0.47 -2.1
393,511 + MMJJ_RS02065 0.47 +1.2
393,511 + MMJJ_RS02065 0.47 -0.9
393,511 - MMJJ_RS02065 0.47 -0.1
393,514 + MMJJ_RS02065 0.47 +0.0
393,516 + MMJJ_RS02065 0.47 -0.2
393,516 + MMJJ_RS02065 0.47 -0.9
393,560 - MMJJ_RS02065 0.50 +0.8
393,561 + MMJJ_RS02065 0.50 +0.8
393,561 + MMJJ_RS02065 0.50 +1.5
393,563 + -1.3
393,563 + MMJJ_RS02065 0.50 +0.5
393,564 - MMJJ_RS02065 0.50 +0.2
393,565 + MMJJ_RS02065 0.50 +0.8
393,565 + MMJJ_RS02065 0.50 +0.1
393,620 - MMJJ_RS02065 0.54 +0.7
393,658 + MMJJ_RS02065 0.56 +0.5
393,658 + MMJJ_RS02065 0.56 +1.8
393,658 + MMJJ_RS02065 0.56 -0.1

Or see this region's nucleotide sequence