Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01280

Experiment: McCas_formate_complete deta nonoate 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01270 and MMJJ_RS01275 are separated by 40 nucleotidesMMJJ_RS01275 and MMJJ_RS01280 are separated by 102 nucleotidesMMJJ_RS01280 and MMJJ_RS01285 are separated by 252 nucleotidesMMJJ_RS01285 and MMJJ_RS01290 are separated by 38 nucleotides MMJJ_RS01270: MMJJ_RS01270 - 4Fe-4S binding protein, at 244,750 to 245,382 _RS01270 MMJJ_RS01275: MMJJ_RS01275 - 4Fe-4S dicluster domain-containing protein, at 245,423 to 246,121 _RS01275 MMJJ_RS01280: MMJJ_RS01280 - hydroxylamine reductase, at 246,224 to 247,864 _RS01280 MMJJ_RS01285: MMJJ_RS01285 - CopG family ribbon-helix-helix protein, at 248,117 to 248,524 _RS01285 MMJJ_RS01290: MMJJ_RS01290 - hypothetical protein, at 248,563 to 248,913 _RS01290 Position (kb) 246 247 248Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.267 kb on + strand, within MMJJ_RS01270at 245.317 kb on + strand, within MMJJ_RS01270at 245.467 kb on - strandat 245.472 kb on + strandat 245.472 kb on + strandat 245.477 kb on - strandat 245.550 kb on + strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.722 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.728 kb on + strand, within MMJJ_RS01275at 245.992 kb on - strand, within MMJJ_RS01275at 246.030 kb on + strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.074 kb on + strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.139 kb on + strandat 246.143 kb on + strandat 246.159 kb on - strandat 246.205 kb on - strandat 246.205 kb on - strandat 246.206 kb on + strandat 246.209 kb on + strandat 246.218 kb on + strandat 246.266 kb on - strandat 246.287 kb on + strandat 246.297 kb on + strandat 246.418 kb on - strand, within MMJJ_RS01280at 246.599 kb on + strand, within MMJJ_RS01280at 246.639 kb on - strand, within MMJJ_RS01280at 246.640 kb on + strand, within MMJJ_RS01280at 246.652 kb on - strand, within MMJJ_RS01280at 246.693 kb on + strand, within MMJJ_RS01280at 246.788 kb on - strand, within MMJJ_RS01280at 246.862 kb on + strand, within MMJJ_RS01280at 246.866 kb on + strand, within MMJJ_RS01280at 246.866 kb on + strand, within MMJJ_RS01280at 246.897 kb on - strand, within MMJJ_RS01280at 246.898 kb on + strand, within MMJJ_RS01280at 246.913 kb on + strand, within MMJJ_RS01280at 246.965 kb on + strand, within MMJJ_RS01280at 247.030 kb on + strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.050 kb on - strand, within MMJJ_RS01280at 247.078 kb on - strand, within MMJJ_RS01280at 247.080 kb on - strand, within MMJJ_RS01280at 247.081 kb on + strand, within MMJJ_RS01280at 247.081 kb on + strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.082 kb on - strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.083 kb on + strand, within MMJJ_RS01280at 247.112 kb on - strand, within MMJJ_RS01280at 247.134 kb on + strand, within MMJJ_RS01280at 247.246 kb on - strand, within MMJJ_RS01280at 247.246 kb on - strand, within MMJJ_RS01280at 247.257 kb on - strand, within MMJJ_RS01280at 247.410 kb on + strand, within MMJJ_RS01280at 247.423 kb on - strand, within MMJJ_RS01280at 247.424 kb on + strand, within MMJJ_RS01280at 247.442 kb on - strand, within MMJJ_RS01280at 247.574 kb on - strand, within MMJJ_RS01280at 247.637 kb on + strand, within MMJJ_RS01280at 247.667 kb on - strand, within MMJJ_RS01280at 247.672 kb on - strand, within MMJJ_RS01280at 247.672 kb on - strand, within MMJJ_RS01280at 247.674 kb on - strand, within MMJJ_RS01280at 247.674 kb on - strand, within MMJJ_RS01280at 247.674 kb on - strand, within MMJJ_RS01280at 247.675 kb on + strand, within MMJJ_RS01280at 247.679 kb on + strand, within MMJJ_RS01280at 247.683 kb on + strand, within MMJJ_RS01280at 247.685 kb on + strand, within MMJJ_RS01280at 247.740 kb on - strandat 247.745 kb on - strandat 247.746 kb on + strandat 247.837 kb on - strandat 247.864 kb on - strandat 247.908 kb on - strandat 247.908 kb on - strandat 247.911 kb on + strandat 247.914 kb on + strandat 247.949 kb on - strandat 247.960 kb on - strandat 248.019 kb on + strandat 248.068 kb on + strandat 248.126 kb on + strandat 248.129 kb on + strandat 248.139 kb on - strandat 248.155 kb on - strandat 248.173 kb on + strand, within MMJJ_RS01285at 248.187 kb on + strand, within MMJJ_RS01285at 248.208 kb on + strand, within MMJJ_RS01285at 248.253 kb on - strand, within MMJJ_RS01285at 248.253 kb on - strand, within MMJJ_RS01285at 248.273 kb on - strand, within MMJJ_RS01285at 248.396 kb on - strand, within MMJJ_RS01285at 248.456 kb on - strand, within MMJJ_RS01285at 248.457 kb on + strand, within MMJJ_RS01285at 248.514 kb on + strandat 248.541 kb on + strandat 248.544 kb on - strandat 248.549 kb on + strandat 248.579 kb on + strandat 248.665 kb on - strand, within MMJJ_RS01290at 248.665 kb on - strand, within MMJJ_RS01290at 248.667 kb on - strand, within MMJJ_RS01290at 248.668 kb on + strand, within MMJJ_RS01290at 248.713 kb on - strand, within MMJJ_RS01290at 248.714 kb on + strand, within MMJJ_RS01290at 248.735 kb on - strand, within MMJJ_RS01290at 248.739 kb on - strand, within MMJJ_RS01290at 248.746 kb on + strand, within MMJJ_RS01290at 248.746 kb on + strand, within MMJJ_RS01290at 248.762 kb on - strand, within MMJJ_RS01290at 248.764 kb on - strand, within MMJJ_RS01290at 248.764 kb on - strand, within MMJJ_RS01290at 248.774 kb on - strand, within MMJJ_RS01290at 248.775 kb on + strand, within MMJJ_RS01290at 248.775 kb on + strand, within MMJJ_RS01290at 248.776 kb on - strand, within MMJJ_RS01290at 248.776 kb on - strand, within MMJJ_RS01290at 248.776 kb on - strand, within MMJJ_RS01290at 248.777 kb on + strand, within MMJJ_RS01290at 248.777 kb on + strand, within MMJJ_RS01290at 248.788 kb on - strand, within MMJJ_RS01290at 248.793 kb on + strand, within MMJJ_RS01290at 248.805 kb on - strand, within MMJJ_RS01290at 248.806 kb on + strand, within MMJJ_RS01290

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete deta nonoate 0.025 mM
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245,244 + MMJJ_RS01270 0.78 -5.2
245,244 + MMJJ_RS01270 0.78 -4.7
245,244 + MMJJ_RS01270 0.78 -3.1
245,267 + MMJJ_RS01270 0.82 -5.4
245,317 + MMJJ_RS01270 0.90 -5.7
245,467 - -5.1
245,472 + -2.0
245,472 + -5.1
245,477 - -3.5
245,550 + MMJJ_RS01275 0.18 -5.2
245,630 - MMJJ_RS01275 0.30 -4.5
245,630 - MMJJ_RS01275 0.30 -5.0
245,722 - MMJJ_RS01275 0.43 -4.4
245,727 - MMJJ_RS01275 0.43 -2.4
245,727 - MMJJ_RS01275 0.43 -2.9
245,728 + MMJJ_RS01275 0.44 -3.5
245,992 - MMJJ_RS01275 0.81 -2.2
246,030 + MMJJ_RS01275 0.87 -2.4
246,034 - MMJJ_RS01275 0.87 -2.5
246,034 - MMJJ_RS01275 0.87 -2.4
246,034 - MMJJ_RS01275 0.87 -5.5
246,074 + -1.8
246,138 - -1.8
246,138 - -2.4
246,138 - -5.1
246,138 - -6.4
246,139 + -4.6
246,143 + -5.0
246,159 - -4.5
246,205 - -2.8
246,205 - -2.5
246,206 + -2.2
246,209 + -5.1
246,218 + -3.6
246,266 - -1.4
246,287 + -1.2
246,297 + -4.4
246,418 - MMJJ_RS01280 0.12 -2.2
246,599 + MMJJ_RS01280 0.23 -3.7
246,639 - MMJJ_RS01280 0.25 -3.4
246,640 + MMJJ_RS01280 0.25 -3.2
246,652 - MMJJ_RS01280 0.26 -5.2
246,693 + MMJJ_RS01280 0.29 -3.9
246,788 - MMJJ_RS01280 0.34 -4.0
246,862 + MMJJ_RS01280 0.39 -3.6
246,866 + MMJJ_RS01280 0.39 -5.4
246,866 + MMJJ_RS01280 0.39 -1.5
246,897 - MMJJ_RS01280 0.41 -4.5
246,898 + MMJJ_RS01280 0.41 -3.8
246,913 + MMJJ_RS01280 0.42 -2.6
246,965 + MMJJ_RS01280 0.45 -4.8
247,030 + MMJJ_RS01280 0.49 -3.3
247,050 - MMJJ_RS01280 0.50 -3.6
247,050 - MMJJ_RS01280 0.50 -4.9
247,050 - MMJJ_RS01280 0.50 -3.8
247,078 - MMJJ_RS01280 0.52 -4.2
247,080 - MMJJ_RS01280 0.52 -5.8
247,081 + MMJJ_RS01280 0.52 -4.8
247,081 + MMJJ_RS01280 0.52 -6.1
247,082 - MMJJ_RS01280 0.52 -3.8
247,082 - MMJJ_RS01280 0.52 -4.2
247,082 - MMJJ_RS01280 0.52 -5.1
247,082 - MMJJ_RS01280 0.52 -2.9
247,082 - MMJJ_RS01280 0.52 -1.0
247,082 - MMJJ_RS01280 0.52 -4.3
247,082 - MMJJ_RS01280 0.52 -1.0
247,082 - MMJJ_RS01280 0.52 -1.0
247,083 + MMJJ_RS01280 0.52 -3.9
247,083 + MMJJ_RS01280 0.52 -3.8
247,083 + MMJJ_RS01280 0.52 -5.1
247,083 + MMJJ_RS01280 0.52 -5.0
247,083 + MMJJ_RS01280 0.52 -4.1
247,083 + MMJJ_RS01280 0.52 -2.5
247,083 + MMJJ_RS01280 0.52 -2.6
247,083 + MMJJ_RS01280 0.52 -3.1
247,112 - MMJJ_RS01280 0.54 -1.8
247,134 + MMJJ_RS01280 0.55 -3.8
247,246 - MMJJ_RS01280 0.62 -3.8
247,246 - MMJJ_RS01280 0.62 -1.3
247,257 - MMJJ_RS01280 0.63 -4.0
247,410 + MMJJ_RS01280 0.72 -2.4
247,423 - MMJJ_RS01280 0.73 -3.7
247,424 + MMJJ_RS01280 0.73 -1.8
247,442 - MMJJ_RS01280 0.74 -4.9
247,574 - MMJJ_RS01280 0.82 -2.6
247,637 + MMJJ_RS01280 0.86 -2.2
247,667 - MMJJ_RS01280 0.88 -3.4
247,672 - MMJJ_RS01280 0.88 -2.2
247,672 - MMJJ_RS01280 0.88 -3.5
247,674 - MMJJ_RS01280 0.88 -5.2
247,674 - MMJJ_RS01280 0.88 -5.2
247,674 - MMJJ_RS01280 0.88 -4.0
247,675 + MMJJ_RS01280 0.88 -4.6
247,679 + MMJJ_RS01280 0.89 -2.1
247,683 + MMJJ_RS01280 0.89 -4.6
247,685 + MMJJ_RS01280 0.89 -4.9
247,740 - -4.1
247,745 - -0.9
247,746 + -4.1
247,837 - -4.4
247,864 - -2.4
247,908 - -4.2
247,908 - -5.4
247,911 + -1.8
247,914 + -1.7
247,949 - -2.2
247,960 - -4.0
248,019 + -3.6
248,068 + -5.9
248,126 + -4.2
248,129 + -4.2
248,139 - -1.8
248,155 - -4.6
248,173 + MMJJ_RS01285 0.14 -1.2
248,187 + MMJJ_RS01285 0.17 -4.8
248,208 + MMJJ_RS01285 0.22 -1.3
248,253 - MMJJ_RS01285 0.33 -2.8
248,253 - MMJJ_RS01285 0.33 -2.2
248,273 - MMJJ_RS01285 0.38 -3.9
248,396 - MMJJ_RS01285 0.68 -1.8
248,456 - MMJJ_RS01285 0.83 -4.6
248,457 + MMJJ_RS01285 0.83 -5.8
248,514 + -3.2
248,541 + -2.0
248,544 - -4.8
248,549 + -0.5
248,579 + -1.0
248,665 - MMJJ_RS01290 0.29 -4.1
248,665 - MMJJ_RS01290 0.29 -1.6
248,667 - MMJJ_RS01290 0.30 -3.1
248,668 + MMJJ_RS01290 0.30 -0.1
248,713 - MMJJ_RS01290 0.43 -1.2
248,714 + MMJJ_RS01290 0.43 -2.4
248,735 - MMJJ_RS01290 0.49 -1.9
248,739 - MMJJ_RS01290 0.50 -5.5
248,746 + MMJJ_RS01290 0.52 -5.6
248,746 + MMJJ_RS01290 0.52 -0.2
248,762 - MMJJ_RS01290 0.57 -1.7
248,764 - MMJJ_RS01290 0.57 -3.8
248,764 - MMJJ_RS01290 0.57 -5.1
248,774 - MMJJ_RS01290 0.60 -2.4
248,775 + MMJJ_RS01290 0.60 -1.0
248,775 + MMJJ_RS01290 0.60 -2.2
248,776 - MMJJ_RS01290 0.61 -4.3
248,776 - MMJJ_RS01290 0.61 -4.4
248,776 - MMJJ_RS01290 0.61 -2.4
248,777 + MMJJ_RS01290 0.61 -4.7
248,777 + MMJJ_RS01290 0.61 -1.3
248,788 - MMJJ_RS01290 0.64 -3.1
248,793 + MMJJ_RS01290 0.66 -4.0
248,805 - MMJJ_RS01290 0.69 -2.6
248,806 + MMJJ_RS01290 0.69 -4.1

Or see this region's nucleotide sequence